Wall clock time and date at job start Wed Apr 1 2020 04:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00115 * 2 1 4 4 H 1.48499 * 109.47227 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47247 * 300.00405 * 3 2 1 6 6 H 1.48503 * 109.46823 * 60.00260 * 3 2 1 7 7 C 1.37879 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00359 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99811 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46885 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.46666 * 180.02562 * 10 9 7 12 12 C 1.48051 * 110.99677 * 169.99979 * 11 10 9 13 13 C 1.53500 * 86.04479 * 137.28838 * 12 11 10 14 14 C 1.48043 * 111.00048 * 269.43868 * 11 10 9 15 15 C 1.52910 * 113.68849 * 222.24387 * 13 12 11 16 16 O 1.43383 * 108.13117 * 274.11699 * 15 13 12 17 17 C 1.42816 * 113.34368 * 294.20847 * 16 15 13 18 18 C 1.50276 * 110.49173 * 51.30460 * 17 16 15 19 19 O 1.21284 * 118.96837 * 161.61872 * 18 17 16 20 20 N 1.34268 * 122.06012 * 341.59516 * 18 17 16 21 21 C 1.46505 * 119.37759 * 181.97044 * 20 18 17 22 22 C 1.52998 * 109.47063 * 275.43357 * 21 20 18 23 23 C 1.53002 * 109.46854 * 174.87528 * 22 21 20 24 24 N 1.46508 * 109.46968 * 180.02562 * 23 22 21 25 25 C 1.36343 * 125.63411 * 269.69378 * 24 23 22 26 26 C 1.34841 * 108.21711 * 179.83164 * 25 24 23 27 27 C 1.40898 * 107.41940 * 0.42662 * 26 25 24 28 28 C 1.34852 * 107.41456 * 359.73471 * 27 26 25 29 29 H 0.96998 * 119.99974 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.46873 * 60.00672 * 9 7 2 31 31 H 1.08992 * 109.47530 * 300.00116 * 9 7 2 32 32 H 1.08998 * 109.46784 * 60.00657 * 10 9 7 33 33 H 1.08994 * 109.47244 * 299.99843 * 10 9 7 34 34 H 1.09001 * 113.77907 * 23.00776 * 12 11 10 35 35 H 1.08996 * 113.78074 * 251.56971 * 12 11 10 36 36 H 1.08998 * 113.78206 * 108.42693 * 14 11 10 37 37 H 1.09000 * 113.78008 * 336.99464 * 14 11 10 38 38 H 1.09001 * 109.90750 * 154.38844 * 15 13 12 39 39 H 1.09001 * 109.66827 * 33.71217 * 15 13 12 40 40 H 1.08997 * 109.26852 * 291.04305 * 17 16 15 41 41 H 1.09001 * 109.27293 * 171.56381 * 17 16 15 42 42 H 1.08999 * 109.46597 * 155.43650 * 21 20 18 43 43 H 1.08998 * 109.47162 * 35.43581 * 21 20 18 44 44 H 1.08993 * 109.47517 * 294.87871 * 22 21 20 45 45 H 1.09000 * 109.46888 * 54.88147 * 22 21 20 46 46 H 1.08998 * 109.47438 * 300.00003 * 23 22 21 47 47 H 1.09006 * 109.47229 * 60.00376 * 23 22 21 48 48 H 1.08003 * 125.88585 * 359.95913 * 25 24 23 49 49 H 1.08001 * 126.29121 * 180.16146 * 26 25 24 50 50 H 1.07992 * 126.29347 * 179.73941 * 27 26 25 51 51 H 1.07996 * 125.88864 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 7 1.5107 -4.9343 -0.0024 12 6 2.4241 -6.0742 -0.2437 13 6 1.6463 -6.7949 0.8662 14 6 1.2577 -5.4015 1.3793 15 6 2.5373 -7.5739 1.8344 16 8 2.7709 -8.8744 1.2777 17 6 1.5904 -9.6737 1.1920 18 6 0.4906 -8.9155 0.5037 19 8 -0.4501 -9.5302 0.0472 20 7 0.5165 -7.5789 0.3785 21 6 -0.6081 -6.8955 -0.2654 22 6 -0.4123 -6.9096 -1.7827 23 6 -1.6456 -6.3104 -2.4616 24 7 -1.4583 -6.3245 -3.9146 25 6 -0.9007 -5.3234 -4.6534 26 6 -0.8990 -5.7047 -5.9468 27 6 -1.4859 -6.9841 -6.0101 28 6 -1.8184 -7.3383 -4.7522 29 1 -0.4850 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6247 -2.5572 0.8896 32 1 2.8725 -3.6048 0.8878 33 1 2.8712 -3.6040 -0.8922 34 1 3.4632 -5.8664 0.0116 35 1 2.3090 -6.5291 -1.2275 36 1 0.2150 -5.3214 1.6865 37 1 1.9517 -4.9948 2.1149 38 1 2.0404 -7.6712 2.7996 39 1 3.4861 -7.0522 1.9605 40 1 1.2661 -9.9451 2.1966 41 1 1.8099 -10.5803 0.6282 42 1 -0.6555 -5.8645 0.0853 43 1 -1.5367 -7.4078 -0.0141 44 1 0.4672 -6.3200 -2.0411 45 1 -0.2738 -7.9363 -2.1216 46 1 -2.5251 -6.9001 -2.2033 47 1 -1.7841 -5.2837 -2.1227 48 1 -0.5233 -4.3874 -4.2687 49 1 -0.5215 -5.1326 -6.7814 50 1 -1.6408 -7.5729 -6.9021 51 1 -2.2884 -8.2653 -4.4587 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040228.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:25 Heat of formation + Delta-G solvation = 19.701392 kcal Electronic energy + Delta-G solvation = -31834.633562 eV Core-core repulsion = 27736.641099 eV Total energy + Delta-G solvation = -4097.992464 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.65350 -40.88204 -39.21362 -37.81951 -35.66282 -34.05058 -33.21993 -31.33619 -30.30070 -29.31359 -28.57698 -27.66079 -26.50704 -25.83796 -24.75020 -23.25441 -22.00531 -21.20897 -20.34307 -20.26356 -19.77185 -18.64397 -17.91757 -17.28566 -16.79591 -16.57802 -16.10021 -15.86789 -15.31730 -14.92714 -14.74081 -14.62878 -14.53882 -14.40633 -14.15073 -13.87513 -13.47181 -13.20094 -13.08627 -12.96307 -12.52802 -12.28736 -12.21302 -12.13709 -12.00786 -11.88062 -11.68673 -11.62978 -11.46023 -11.18675 -11.10849 -10.96005 -10.77105 -10.59869 -10.52555 -9.97861 -9.66269 -9.50279 -9.18380 -8.93071 -8.50497 -8.42090 -8.40655 -7.97422 -6.08813 -4.11857 2.24598 2.43435 2.59385 3.15517 3.23722 3.24916 3.33184 3.34595 3.36135 3.90723 4.01698 4.26521 4.38704 4.40558 4.70793 4.76296 4.92482 4.95230 5.02832 5.12171 5.20201 5.23594 5.27020 5.27858 5.30687 5.35656 5.45026 5.49119 5.53679 5.57503 5.67280 5.72637 5.77097 5.81618 5.85718 6.00428 6.14795 6.18194 6.34487 6.45419 6.49361 6.50424 6.63345 6.88132 7.15341 7.17857 7.23727 7.42985 7.57354 7.61947 7.74543 7.83545 7.94496 8.31631 8.95397 9.52968 11.02301 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006963 B = 0.003910 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4020.239687 B = 7160.111124 C =10429.330049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.036 3.964 10 C 0.029 3.971 11 N -0.471 5.471 12 C 0.000 4.000 13 C 0.102 3.898 14 C 0.005 3.995 15 C 0.062 3.938 16 O -0.367 6.367 17 C 0.049 3.951 18 C 0.487 3.513 19 O -0.540 6.540 20 N -0.570 5.570 21 C 0.119 3.881 22 C -0.141 4.141 23 C 0.109 3.891 24 N -0.442 5.442 25 C -0.005 4.005 26 C -0.211 4.211 27 C -0.207 4.207 28 C -0.020 4.020 29 H 0.260 0.740 30 H 0.022 0.978 31 H 0.014 0.986 32 H 0.033 0.967 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.118 0.882 40 H 0.088 0.912 41 H 0.129 0.871 42 H 0.105 0.895 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.084 0.916 47 H 0.097 0.903 48 H 0.163 0.837 49 H 0.131 0.869 50 H 0.129 0.871 51 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.064 -17.964 1.390 18.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.002 4.002 10 C -0.099 4.099 11 N -0.193 5.193 12 C -0.130 4.130 13 C 0.014 3.986 14 C -0.124 4.124 15 C -0.016 4.016 16 O -0.285 6.285 17 C -0.031 4.031 18 C 0.275 3.725 19 O -0.418 6.418 20 N -0.301 5.301 21 C -0.003 4.003 22 C -0.180 4.180 23 C -0.014 4.014 24 N -0.117 5.117 25 C -0.135 4.135 26 C -0.235 4.235 27 C -0.232 4.232 28 C -0.150 4.150 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.032 0.968 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.136 0.864 40 H 0.106 0.894 41 H 0.147 0.853 42 H 0.123 0.877 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.082 0.918 46 H 0.103 0.897 47 H 0.115 0.885 48 H 0.180 0.820 49 H 0.149 0.851 50 H 0.147 0.853 51 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.005 -18.094 1.024 18.122 hybrid contribution 0.987 1.183 0.557 1.638 sum 0.992 -16.911 1.581 17.013 Atomic orbital electron populations 1.69969 1.06025 1.26565 1.50519 1.24974 0.94806 0.99181 0.95163 0.86567 0.80096 0.83856 0.77667 1.19771 1.20928 1.21008 1.21214 0.92973 0.91064 1.51097 0.92807 1.18941 0.93713 0.89900 0.97629 1.22883 0.97259 0.90087 0.99639 1.68668 1.32633 1.02028 1.15978 1.24366 0.96312 0.92798 0.99570 1.22484 0.87748 0.92226 0.96128 1.24309 1.03497 0.90919 0.93703 1.23097 1.00512 0.83194 0.94791 1.88171 1.30327 1.26193 1.83771 1.22762 0.83995 0.94785 1.01554 1.21135 0.88571 0.82537 0.80239 1.90736 1.35661 1.66868 1.48530 1.47202 1.19660 1.05530 1.57719 1.21461 0.88018 0.99157 0.91670 1.22236 0.98846 1.01729 0.95152 1.21781 0.98724 1.03746 0.77117 1.44160 1.46409 1.14597 1.06530 1.21991 1.04933 0.95034 0.91525 1.20862 1.08846 0.97892 0.95892 1.20832 1.08023 0.98147 0.96217 1.21768 1.08353 0.94759 0.90152 0.92999 0.95938 0.96776 0.94867 0.92027 0.90341 0.89271 0.88767 0.89682 0.91354 0.86389 0.89417 0.85300 0.87717 0.90631 0.89719 0.91764 0.89715 0.88512 0.81956 0.85077 0.85260 0.82753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.04 9.11 -34.44 -0.31 -14.36 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.04 0.85 5.28 -27.88 -0.15 0.70 16 10 C 0.03 0.53 4.73 -3.82 -0.02 0.51 16 11 N -0.47 -6.90 4.63 -240.32 -1.11 -8.02 16 12 C 0.00 0.00 6.60 -2.94 -0.02 -0.02 16 13 C 0.10 1.09 1.55 -135.09 -0.21 0.88 16 14 C 0.01 0.07 6.51 -2.95 -0.02 0.05 16 15 C 0.06 0.53 6.10 37.11 0.23 0.75 16 16 O -0.37 -3.60 10.84 -35.23 -0.38 -3.98 16 17 C 0.05 0.44 6.94 35.80 0.25 0.69 16 18 C 0.49 5.95 7.59 -11.42 -0.09 5.87 16 19 O -0.54 -8.21 16.48 5.55 0.09 -8.12 16 20 N -0.57 -6.72 2.67 -162.04 -0.43 -7.15 16 21 C 0.12 1.45 4.46 -4.04 -0.02 1.43 16 22 C -0.14 -1.78 5.65 -26.73 -0.15 -1.93 16 23 C 0.11 1.32 6.09 -4.04 -0.02 1.29 16 24 N -0.44 -6.08 2.75 -117.12 -0.32 -6.40 16 25 C 0.00 -0.07 11.43 -16.75 -0.19 -0.26 16 26 C -0.21 -2.99 10.86 -39.78 -0.43 -3.42 16 27 C -0.21 -2.80 10.86 -39.78 -0.43 -3.24 16 28 C -0.02 -0.27 11.43 -16.75 -0.19 -0.46 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.03 0.58 7.38 -51.93 -0.38 0.20 16 33 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 34 H 0.08 0.88 7.69 -51.93 -0.40 0.48 16 35 H 0.09 1.18 6.93 -51.93 -0.36 0.82 16 36 H 0.09 1.18 7.01 -51.93 -0.36 0.82 16 37 H 0.09 0.97 7.42 -51.93 -0.39 0.58 16 38 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 39 H 0.12 0.84 7.87 -51.93 -0.41 0.43 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.10 1.35 5.40 -51.93 -0.28 1.07 16 43 H 0.08 0.92 7.53 -51.93 -0.39 0.53 16 44 H 0.08 1.22 6.20 -51.93 -0.32 0.89 16 45 H 0.06 0.91 8.05 -51.93 -0.42 0.49 16 46 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.16 2.29 8.06 -52.48 -0.42 1.87 16 49 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 50 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 51 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 407.00 15.07 6.13 6.13 Total: -1.00 -31.94 407.00 -10.51 -42.45 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -8.32 Total: 4.18 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -1.88 Total: -9.95 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -1.13 Total: -46.62 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -0.29 Total: -12.09 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.94 -10.51 -42.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040228.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.154 kcal (2) G-P(sol) polarization free energy of solvation -31.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds