Wall clock time and date at job start Wed Apr 1 2020 04:40:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86801 * 120.00089 * 2 1
4 4 H 1.48497 * 109.47463 * 240.00000 * 3 2 1
5 5 H 1.48509 * 109.47005 * 0.02562 * 3 2 1
6 6 H 1.48504 * 109.47160 * 119.99715 * 3 2 1
7 7 C 1.37871 * 120.00250 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00483 * 180.02562 * 7 2 1
9 9 C 1.50704 * 119.99891 * 359.97438 * 7 2 1
10 10 C 1.52999 * 109.47349 * 180.02562 * 9 7 2
11 11 C 1.53004 * 109.47137 * 179.97438 * 10 9 7
12 12 N 1.46898 * 109.46962 * 184.83411 * 11 10 9
13 13 C 1.46811 * 110.99972 * 65.89460 * 12 11 10
14 14 C 1.53260 * 109.44083 * 170.80049 * 13 12 11
15 15 C 1.53211 * 108.62476 * 55.58949 * 14 13 12
16 16 C 1.52770 * 117.78936 * 93.97238 * 15 14 13
17 17 C 1.52732 * 117.84743 * 162.98186 * 15 14 13
18 18 H 1.09002 * 117.50389 * 359.73822 * 17 15 14
19 19 C 1.50694 * 117.50403 * 144.79264 * 17 15 14
20 20 O 1.21281 * 120.00212 * 359.97438 * 19 17 15
21 21 N 1.34779 * 120.00185 * 180.02562 * 19 17 15
22 22 C 1.46505 * 120.00200 * 179.97438 * 21 19 17
23 23 C 1.50703 * 109.46850 * 180.02562 * 22 21 19
24 24 C 1.41374 * 128.00793 * 90.00246 * 23 22 21
25 25 N 1.30172 * 106.39500 * 179.97438 * 24 23 22
26 26 O 1.20922 * 111.60625 * 359.97438 * 25 24 23
27 27 C 1.34046 * 111.56546 * 359.76264 * 26 25 24
28 28 C 1.53213 * 114.74146 * 308.58290 * 15 14 13
29 29 C 1.46812 * 111.00132 * 301.18938 * 12 11 10
30 30 H 0.97005 * 119.99722 * 0.02562 * 1 2 3
31 31 H 1.09003 * 109.46736 * 60.00525 * 9 7 2
32 32 H 1.09004 * 109.47068 * 300.00744 * 9 7 2
33 33 H 1.09003 * 109.46836 * 60.00509 * 10 9 7
34 34 H 1.08994 * 109.47199 * 300.00744 * 10 9 7
35 35 H 1.09000 * 109.46509 * 64.83475 * 11 10 9
36 36 H 1.08993 * 109.47406 * 304.83882 * 11 10 9
37 37 H 1.08997 * 109.47411 * 50.81112 * 13 12 11
38 38 H 1.09000 * 109.47359 * 290.78948 * 13 12 11
39 39 H 1.09001 * 109.61351 * 295.84568 * 14 13 12
40 40 H 1.09001 * 109.61222 * 175.33119 * 14 13 12
41 41 H 1.08998 * 117.50676 * 215.30309 * 16 15 14
42 42 H 1.09001 * 117.50029 * 0.33966 * 16 15 14
43 43 H 0.97004 * 119.99911 * 359.97438 * 21 19 17
44 44 H 1.09003 * 109.46622 * 299.99288 * 22 21 19
45 45 H 1.08997 * 109.46926 * 59.99906 * 22 21 19
46 46 H 1.08003 * 126.80562 * 359.93175 * 24 23 22
47 47 H 1.07994 * 126.77722 * 180.28334 * 27 26 25
48 48 H 1.08999 * 109.61621 * 171.15648 * 28 15 14
49 49 H 1.08997 * 109.61316 * 291.67351 * 28 15 14
50 50 H 1.09003 * 109.47447 * 309.19197 * 29 12 11
51 51 H 1.08996 * 109.47875 * 69.20717 * 29 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1029 1.6965 -1.2124
5 1 1.2841 2.7465 0.0006
6 1 3.1029 1.6964 1.2126
7 6 2.0046 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0001
9 6 1.2511 -2.4991 -0.0005
10 6 2.2453 -3.6620 -0.0005
11 6 1.4803 -4.9871 0.0001
12 7 2.4306 -6.1011 0.1168
13 6 3.1050 -6.0829 1.4207
14 6 3.9095 -7.3755 1.5970
15 6 4.8719 -7.5181 0.4135
16 6 6.2935 -6.9850 0.5832
17 6 6.0382 -8.4939 0.5559
18 1 6.1282 -9.0369 1.4967
19 6 6.4671 -9.2500 -0.6751
20 8 5.8910 -9.0725 -1.7274
21 7 7.4905 -10.1244 -0.6064
22 6 7.9072 -10.8599 -1.8029
23 6 9.0620 -11.7651 -1.4593
24 6 9.0143 -13.1041 -1.0082
25 7 10.2494 -13.4799 -0.8415
26 8 11.0253 -12.5942 -1.1166
27 6 10.3862 -11.4862 -1.5176
28 6 4.2177 -7.3810 -0.9651
29 6 3.3950 -6.0882 -0.9901
30 1 -0.4850 0.8401 -0.0004
31 1 0.6242 -2.5567 -0.8904
32 1 0.6246 -2.5570 0.8896
33 1 2.8719 -3.6043 0.8895
34 1 2.8720 -3.6043 -0.8904
35 1 0.9199 -5.0834 -0.9298
36 1 0.7905 -5.0080 0.8437
37 1 2.3610 -6.0070 2.2136
38 1 3.7777 -5.2266 1.4700
39 1 3.2310 -8.2282 1.6217
40 1 4.4770 -7.3293 2.5265
41 1 6.7716 -6.5394 -0.2891
42 1 6.5512 -6.5350 1.5420
43 1 7.9511 -10.2668 0.2354
44 1 7.0735 -11.4586 -2.1700
45 1 8.2152 -10.1542 -2.5743
46 1 8.1286 -13.6975 -0.8353
47 1 10.8379 -10.5545 -1.8243
48 1 4.9893 -7.3385 -1.7338
49 1 3.5640 -8.2342 -1.1463
50 1 2.8602 -6.0160 -1.9371
51 1 4.0605 -5.2318 -0.8823
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001274043153.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:40:14
Heat of formation + Delta-G solvation = 45.428064 kcal
Electronic energy + Delta-G solvation = -29652.108296 eV
Core-core repulsion = 25555.231425 eV
Total energy + Delta-G solvation = -4096.876871 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-45.57878 -40.73107 -38.89675 -36.79660 -35.92585 -33.92079 -33.60087 -32.35305
-31.67495 -30.81013 -29.40046 -27.87664 -25.82524 -24.17279 -23.50045 -23.39783
-23.17015 -21.98077 -21.51633 -20.59474 -20.07657 -18.64421 -18.20885 -18.13660
-17.33064 -16.45691 -16.26007 -15.75631 -15.47781 -15.21842 -14.92577 -14.75930
-14.57636 -14.31013 -14.12360 -13.69873 -13.57182 -13.41464 -13.12803 -12.95177
-12.86861 -12.28718 -12.19839 -11.95960 -11.93075 -11.77114 -11.56812 -11.14616
-11.06463 -11.02980 -10.78758 -10.62741 -10.56326 -10.51651 -10.27932 -10.04536
-9.94791 -9.58016 -9.52982 -9.51498 -9.37852 -9.15670 -8.32799 -7.74124
-5.97787 -4.00343 0.80801 1.52146 2.21353 2.58081 2.89077 3.33286
3.37704 3.40107 3.58928 3.65317 4.05721 4.17541 4.31975 4.35705
4.46983 4.48226 4.51785 4.62763 4.81864 4.93980 4.95671 5.11503
5.17373 5.28907 5.37319 5.37644 5.39809 5.53374 5.59658 5.63044
5.71888 5.76653 5.82781 5.91442 5.97380 6.03046 6.10977 6.14984
6.27954 6.34864 6.38757 6.57605 6.68199 6.85776 7.07095 7.10495
7.50464 7.54052 7.61009 7.69197 7.85255 7.90882 8.02071 8.45585
9.06416 9.63440 11.13152
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.022634 B = 0.001591 C = 0.001541
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1236.803912 B =17595.409081 C =18161.186708
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.895 5.895
2 C 0.057 3.943
3 Si 0.891 3.109
4 H -0.277 1.277
5 H -0.287 1.287
6 H -0.278 1.278
7 C -0.520 4.520
8 H 0.052 0.948
9 C 0.024 3.976
10 C -0.143 4.143
11 C 0.053 3.947
12 N -0.541 5.541
13 C 0.058 3.942
14 C -0.079 4.079
15 C -0.074 4.074
16 C -0.146 4.146
17 C -0.194 4.194
18 H 0.120 0.880
19 C 0.546 3.454
20 O -0.525 6.525
21 N -0.730 5.730
22 C 0.199 3.801
23 C -0.226 4.226
24 C 0.005 3.995
25 N -0.363 5.363
26 O 0.099 5.901
27 C -0.032 4.032
28 C -0.072 4.072
29 C 0.054 3.946
30 H 0.260 0.740
31 H 0.015 0.985
32 H 0.015 0.985
33 H 0.046 0.954
34 H 0.047 0.953
35 H 0.069 0.931
36 H 0.069 0.931
37 H 0.074 0.926
38 H 0.040 0.960
39 H 0.074 0.926
40 H 0.065 0.935
41 H 0.099 0.901
42 H 0.104 0.896
43 H 0.401 0.599
44 H 0.083 0.917
45 H 0.083 0.917
46 H 0.193 0.807
47 H 0.220 0.780
48 H 0.087 0.913
49 H 0.071 0.929
50 H 0.072 0.928
51 H 0.037 0.963
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.635 -25.872 0.451 32.482
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.535 5.535
2 C -0.144 4.144
3 Si 0.719 3.281
4 H -0.203 1.203
5 H -0.213 1.213
6 H -0.203 1.203
7 C -0.559 4.559
8 H 0.070 0.930
9 C -0.013 4.013
10 C -0.182 4.182
11 C -0.074 4.074
12 N -0.264 5.264
13 C -0.071 4.071
14 C -0.117 4.117
15 C -0.075 4.075
16 C -0.183 4.183
17 C -0.215 4.215
18 H 0.138 0.862
19 C 0.334 3.666
20 O -0.401 6.401
21 N -0.383 5.383
22 C 0.075 3.925
23 C -0.230 4.230
24 C -0.174 4.174
25 N -0.067 5.067
26 O 0.035 5.965
27 C -0.115 4.115
28 C -0.110 4.110
29 C -0.074 4.074
30 H 0.070 0.930
31 H 0.034 0.966
32 H 0.033 0.967
33 H 0.065 0.935
34 H 0.066 0.934
35 H 0.088 0.912
36 H 0.088 0.912
37 H 0.092 0.908
38 H 0.058 0.942
39 H 0.093 0.907
40 H 0.083 0.917
41 H 0.117 0.883
42 H 0.122 0.878
43 H 0.235 0.765
44 H 0.102 0.898
45 H 0.101 0.899
46 H 0.210 0.790
47 H 0.237 0.763
48 H 0.106 0.894
49 H 0.089 0.911
50 H 0.090 0.910
51 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges 19.382 -27.228 0.039 33.422
hybrid contribution 0.634 2.202 0.328 2.315
sum 20.016 -25.026 0.367 32.048
Atomic orbital electron populations
1.69956 1.06008 1.26626 1.50862 1.25020 0.94840 0.99166 0.95400
0.86684 0.79612 0.83288 0.78555 1.20291 1.21254 1.20323 1.21224
0.92873 0.91234 1.50537 0.92999 1.19023 0.93898 0.91271 0.97125
1.22214 0.99909 0.95915 1.00167 1.22322 0.94556 0.88389 1.02133
1.62076 1.17831 1.44703 1.01795 1.22010 0.96967 0.95956 0.92134
1.21275 0.96644 0.99018 0.94722 1.21577 0.88718 0.98625 0.98569
1.23107 0.99864 0.91460 1.03899 1.22285 1.08149 0.93415 0.97696
0.86165 1.19801 0.78746 0.78619 0.89468 1.90714 1.53896 1.64364
1.31142 1.46063 1.35728 1.43731 1.12816 1.19358 0.92749 0.92474
0.87871 1.21442 0.95553 0.96391 1.09637 1.25086 0.96323 0.94744
1.01281 1.73950 1.02222 1.12317 1.18176 1.84880 1.33729 1.16973
1.60911 1.26044 0.92128 0.93472 0.99842 1.21413 0.98801 0.97529
0.93257 1.22154 0.93963 0.96767 0.94559 0.92986 0.96623 0.96691
0.93491 0.93381 0.91213 0.91237 0.90799 0.94204 0.90699 0.91673
0.88284 0.87793 0.76459 0.89847 0.89909 0.79046 0.76347 0.89430
0.91069 0.90957 0.94444
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16
2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16
3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16
4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16
7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16
8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16
9 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16
10 C -0.14 -2.99 4.44 -26.73 -0.12 -3.10 16
11 C 0.05 0.94 5.32 -3.82 -0.02 0.92 16
12 N -0.54 -8.30 4.78 -234.45 -1.12 -9.42 16
13 C 0.06 0.78 4.99 -3.74 -0.02 0.76 16
14 C -0.08 -0.85 5.87 -26.49 -0.16 -1.00 16
15 C -0.07 -0.80 2.02 -154.55 -0.31 -1.11 16
16 C -0.15 -1.33 9.62 -26.82 -0.26 -1.58 16
17 C -0.19 -1.62 5.92 -91.88 -0.54 -2.17 16
18 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16
19 C 0.55 5.00 7.59 -10.99 -0.08 4.91 16
20 O -0.53 -6.65 13.13 5.56 0.07 -6.57 16
21 N -0.73 -4.33 5.55 -61.47 -0.34 -4.67 16
22 C 0.20 1.06 6.25 -5.19 -0.03 1.03 16
23 C -0.23 -1.04 5.69 -104.42 -0.59 -1.63 16
24 C 0.01 0.03 12.16 -17.06 -0.21 -0.18 16
25 N -0.36 -2.76 12.07 30.35 0.37 -2.40 16
26 O 0.10 0.62 11.20 17.16 0.19 0.81 16
27 C -0.03 -0.12 12.26 29.74 0.36 0.25 16
28 C -0.07 -0.94 4.32 -26.49 -0.11 -1.06 16
29 C 0.05 0.79 4.77 -3.74 -0.02 0.77 16
30 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16
31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
32 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16
33 H 0.05 0.98 6.54 -51.93 -0.34 0.64 16
34 H 0.05 1.01 6.87 -51.93 -0.36 0.65 16
35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16
36 H 0.07 1.23 8.02 -51.93 -0.42 0.81 16
37 H 0.07 0.99 8.00 -51.93 -0.42 0.57 16
38 H 0.04 0.59 6.80 -51.93 -0.35 0.24 16
39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16
40 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16
41 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16
42 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16
43 H 0.40 1.61 8.46 -40.82 -0.35 1.27 16
44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16
45 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16
46 H 0.19 0.70 8.06 -52.48 -0.42 0.28 16
47 H 0.22 0.02 8.06 -52.49 -0.42 -0.40 16
48 H 0.09 1.20 6.00 -51.93 -0.31 0.89 16
49 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16
50 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16
51 H 0.04 0.59 6.90 -51.93 -0.36 0.23 16
LS Contribution 408.98 15.07 6.16 6.16
Total: -1.00 -33.89 408.98 -9.96 -43.85
By element:
Atomic # 1 Polarization: 6.59 SS G_CDS: -8.35 Total: -1.76 kcal
Atomic # 6 Polarization: -13.75 SS G_CDS: -2.66 Total: -16.41 kcal
Atomic # 7 Polarization: -42.58 SS G_CDS: -0.36 Total: -42.93 kcal
Atomic # 8 Polarization: -6.03 SS G_CDS: 0.27 Total: -5.77 kcal
Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal
Total LS contribution 6.16 Total: 6.16 kcal
Total: -33.89 -9.96 -43.85 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001274043153.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.279 kcal
(2) G-P(sol) polarization free energy of solvation -33.887 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.391 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.851 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.428 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds