Wall clock time and date at job start Wed Apr 1 2020 04:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00089 * 2 1 4 4 H 1.48497 * 109.47463 * 240.00000 * 3 2 1 5 5 H 1.48509 * 109.47005 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47160 * 119.99715 * 3 2 1 7 7 C 1.37871 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47349 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47137 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.46962 * 184.83411 * 11 10 9 13 13 C 1.46811 * 110.99972 * 65.89460 * 12 11 10 14 14 C 1.53260 * 109.44083 * 170.80049 * 13 12 11 15 15 C 1.53211 * 108.62476 * 55.58949 * 14 13 12 16 16 C 1.52770 * 117.78936 * 93.97238 * 15 14 13 17 17 C 1.52732 * 117.84743 * 162.98186 * 15 14 13 18 18 H 1.09002 * 117.50389 * 359.73822 * 17 15 14 19 19 C 1.50694 * 117.50403 * 144.79264 * 17 15 14 20 20 O 1.21281 * 120.00212 * 359.97438 * 19 17 15 21 21 N 1.34779 * 120.00185 * 180.02562 * 19 17 15 22 22 C 1.46505 * 120.00200 * 179.97438 * 21 19 17 23 23 C 1.50703 * 109.46850 * 180.02562 * 22 21 19 24 24 C 1.41374 * 128.00793 * 90.00246 * 23 22 21 25 25 N 1.30172 * 106.39500 * 179.97438 * 24 23 22 26 26 O 1.20922 * 111.60625 * 359.97438 * 25 24 23 27 27 C 1.34046 * 111.56546 * 359.76264 * 26 25 24 28 28 C 1.53213 * 114.74146 * 308.58290 * 15 14 13 29 29 C 1.46812 * 111.00132 * 301.18938 * 12 11 10 30 30 H 0.97005 * 119.99722 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.46736 * 60.00525 * 9 7 2 32 32 H 1.09004 * 109.47068 * 300.00744 * 9 7 2 33 33 H 1.09003 * 109.46836 * 60.00509 * 10 9 7 34 34 H 1.08994 * 109.47199 * 300.00744 * 10 9 7 35 35 H 1.09000 * 109.46509 * 64.83475 * 11 10 9 36 36 H 1.08993 * 109.47406 * 304.83882 * 11 10 9 37 37 H 1.08997 * 109.47411 * 50.81112 * 13 12 11 38 38 H 1.09000 * 109.47359 * 290.78948 * 13 12 11 39 39 H 1.09001 * 109.61351 * 295.84568 * 14 13 12 40 40 H 1.09001 * 109.61222 * 175.33119 * 14 13 12 41 41 H 1.08998 * 117.50676 * 215.30309 * 16 15 14 42 42 H 1.09001 * 117.50029 * 0.33966 * 16 15 14 43 43 H 0.97004 * 119.99911 * 359.97438 * 21 19 17 44 44 H 1.09003 * 109.46622 * 299.99288 * 22 21 19 45 45 H 1.08997 * 109.46926 * 59.99906 * 22 21 19 46 46 H 1.08003 * 126.80562 * 359.93175 * 24 23 22 47 47 H 1.07994 * 126.77722 * 180.28334 * 27 26 25 48 48 H 1.08999 * 109.61621 * 171.15648 * 28 15 14 49 49 H 1.08997 * 109.61316 * 291.67351 * 28 15 14 50 50 H 1.09003 * 109.47447 * 309.19197 * 29 12 11 51 51 H 1.08996 * 109.47875 * 69.20717 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 0.0001 12 7 2.4306 -6.1011 0.1168 13 6 3.1050 -6.0829 1.4207 14 6 3.9095 -7.3755 1.5970 15 6 4.8719 -7.5181 0.4135 16 6 6.2935 -6.9850 0.5832 17 6 6.0382 -8.4939 0.5559 18 1 6.1282 -9.0369 1.4967 19 6 6.4671 -9.2500 -0.6751 20 8 5.8910 -9.0725 -1.7274 21 7 7.4905 -10.1244 -0.6064 22 6 7.9072 -10.8599 -1.8029 23 6 9.0620 -11.7651 -1.4593 24 6 9.0143 -13.1041 -1.0082 25 7 10.2494 -13.4799 -0.8415 26 8 11.0253 -12.5942 -1.1166 27 6 10.3862 -11.4862 -1.5176 28 6 4.2177 -7.3810 -0.9651 29 6 3.3950 -6.0882 -0.9901 30 1 -0.4850 0.8401 -0.0004 31 1 0.6242 -2.5567 -0.8904 32 1 0.6246 -2.5570 0.8896 33 1 2.8719 -3.6043 0.8895 34 1 2.8720 -3.6043 -0.8904 35 1 0.9199 -5.0834 -0.9298 36 1 0.7905 -5.0080 0.8437 37 1 2.3610 -6.0070 2.2136 38 1 3.7777 -5.2266 1.4700 39 1 3.2310 -8.2282 1.6217 40 1 4.4770 -7.3293 2.5265 41 1 6.7716 -6.5394 -0.2891 42 1 6.5512 -6.5350 1.5420 43 1 7.9511 -10.2668 0.2354 44 1 7.0735 -11.4586 -2.1700 45 1 8.2152 -10.1542 -2.5743 46 1 8.1286 -13.6975 -0.8353 47 1 10.8379 -10.5545 -1.8243 48 1 4.9893 -7.3385 -1.7338 49 1 3.5640 -8.2342 -1.1463 50 1 2.8602 -6.0160 -1.9371 51 1 4.0605 -5.2318 -0.8823 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274043153.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:14 Heat of formation + Delta-G solvation = 45.428064 kcal Electronic energy + Delta-G solvation = -29652.108296 eV Core-core repulsion = 25555.231425 eV Total energy + Delta-G solvation = -4096.876871 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.57878 -40.73107 -38.89675 -36.79660 -35.92585 -33.92079 -33.60087 -32.35305 -31.67495 -30.81013 -29.40046 -27.87664 -25.82524 -24.17279 -23.50045 -23.39783 -23.17015 -21.98077 -21.51633 -20.59474 -20.07657 -18.64421 -18.20885 -18.13660 -17.33064 -16.45691 -16.26007 -15.75631 -15.47781 -15.21842 -14.92577 -14.75930 -14.57636 -14.31013 -14.12360 -13.69873 -13.57182 -13.41464 -13.12803 -12.95177 -12.86861 -12.28718 -12.19839 -11.95960 -11.93075 -11.77114 -11.56812 -11.14616 -11.06463 -11.02980 -10.78758 -10.62741 -10.56326 -10.51651 -10.27932 -10.04536 -9.94791 -9.58016 -9.52982 -9.51498 -9.37852 -9.15670 -8.32799 -7.74124 -5.97787 -4.00343 0.80801 1.52146 2.21353 2.58081 2.89077 3.33286 3.37704 3.40107 3.58928 3.65317 4.05721 4.17541 4.31975 4.35705 4.46983 4.48226 4.51785 4.62763 4.81864 4.93980 4.95671 5.11503 5.17373 5.28907 5.37319 5.37644 5.39809 5.53374 5.59658 5.63044 5.71888 5.76653 5.82781 5.91442 5.97380 6.03046 6.10977 6.14984 6.27954 6.34864 6.38757 6.57605 6.68199 6.85776 7.07095 7.10495 7.50464 7.54052 7.61009 7.69197 7.85255 7.90882 8.02071 8.45585 9.06416 9.63440 11.13152 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022634 B = 0.001591 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.803912 B =17595.409081 C =18161.186708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.520 4.520 8 H 0.052 0.948 9 C 0.024 3.976 10 C -0.143 4.143 11 C 0.053 3.947 12 N -0.541 5.541 13 C 0.058 3.942 14 C -0.079 4.079 15 C -0.074 4.074 16 C -0.146 4.146 17 C -0.194 4.194 18 H 0.120 0.880 19 C 0.546 3.454 20 O -0.525 6.525 21 N -0.730 5.730 22 C 0.199 3.801 23 C -0.226 4.226 24 C 0.005 3.995 25 N -0.363 5.363 26 O 0.099 5.901 27 C -0.032 4.032 28 C -0.072 4.072 29 C 0.054 3.946 30 H 0.260 0.740 31 H 0.015 0.985 32 H 0.015 0.985 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.401 0.599 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.193 0.807 47 H 0.220 0.780 48 H 0.087 0.913 49 H 0.071 0.929 50 H 0.072 0.928 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.635 -25.872 0.451 32.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.070 0.930 9 C -0.013 4.013 10 C -0.182 4.182 11 C -0.074 4.074 12 N -0.264 5.264 13 C -0.071 4.071 14 C -0.117 4.117 15 C -0.075 4.075 16 C -0.183 4.183 17 C -0.215 4.215 18 H 0.138 0.862 19 C 0.334 3.666 20 O -0.401 6.401 21 N -0.383 5.383 22 C 0.075 3.925 23 C -0.230 4.230 24 C -0.174 4.174 25 N -0.067 5.067 26 O 0.035 5.965 27 C -0.115 4.115 28 C -0.110 4.110 29 C -0.074 4.074 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.033 0.967 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.117 0.883 42 H 0.122 0.878 43 H 0.235 0.765 44 H 0.102 0.898 45 H 0.101 0.899 46 H 0.210 0.790 47 H 0.237 0.763 48 H 0.106 0.894 49 H 0.089 0.911 50 H 0.090 0.910 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 19.382 -27.228 0.039 33.422 hybrid contribution 0.634 2.202 0.328 2.315 sum 20.016 -25.026 0.367 32.048 Atomic orbital electron populations 1.69956 1.06008 1.26626 1.50862 1.25020 0.94840 0.99166 0.95400 0.86684 0.79612 0.83288 0.78555 1.20291 1.21254 1.20323 1.21224 0.92873 0.91234 1.50537 0.92999 1.19023 0.93898 0.91271 0.97125 1.22214 0.99909 0.95915 1.00167 1.22322 0.94556 0.88389 1.02133 1.62076 1.17831 1.44703 1.01795 1.22010 0.96967 0.95956 0.92134 1.21275 0.96644 0.99018 0.94722 1.21577 0.88718 0.98625 0.98569 1.23107 0.99864 0.91460 1.03899 1.22285 1.08149 0.93415 0.97696 0.86165 1.19801 0.78746 0.78619 0.89468 1.90714 1.53896 1.64364 1.31142 1.46063 1.35728 1.43731 1.12816 1.19358 0.92749 0.92474 0.87871 1.21442 0.95553 0.96391 1.09637 1.25086 0.96323 0.94744 1.01281 1.73950 1.02222 1.12317 1.18176 1.84880 1.33729 1.16973 1.60911 1.26044 0.92128 0.93472 0.99842 1.21413 0.98801 0.97529 0.93257 1.22154 0.93963 0.96767 0.94559 0.92986 0.96623 0.96691 0.93491 0.93381 0.91213 0.91237 0.90799 0.94204 0.90699 0.91673 0.88284 0.87793 0.76459 0.89847 0.89909 0.79046 0.76347 0.89430 0.91069 0.90957 0.94444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.14 -2.99 4.44 -26.73 -0.12 -3.10 16 11 C 0.05 0.94 5.32 -3.82 -0.02 0.92 16 12 N -0.54 -8.30 4.78 -234.45 -1.12 -9.42 16 13 C 0.06 0.78 4.99 -3.74 -0.02 0.76 16 14 C -0.08 -0.85 5.87 -26.49 -0.16 -1.00 16 15 C -0.07 -0.80 2.02 -154.55 -0.31 -1.11 16 16 C -0.15 -1.33 9.62 -26.82 -0.26 -1.58 16 17 C -0.19 -1.62 5.92 -91.88 -0.54 -2.17 16 18 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 19 C 0.55 5.00 7.59 -10.99 -0.08 4.91 16 20 O -0.53 -6.65 13.13 5.56 0.07 -6.57 16 21 N -0.73 -4.33 5.55 -61.47 -0.34 -4.67 16 22 C 0.20 1.06 6.25 -5.19 -0.03 1.03 16 23 C -0.23 -1.04 5.69 -104.42 -0.59 -1.63 16 24 C 0.01 0.03 12.16 -17.06 -0.21 -0.18 16 25 N -0.36 -2.76 12.07 30.35 0.37 -2.40 16 26 O 0.10 0.62 11.20 17.16 0.19 0.81 16 27 C -0.03 -0.12 12.26 29.74 0.36 0.25 16 28 C -0.07 -0.94 4.32 -26.49 -0.11 -1.06 16 29 C 0.05 0.79 4.77 -3.74 -0.02 0.77 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.98 6.54 -51.93 -0.34 0.64 16 34 H 0.05 1.01 6.87 -51.93 -0.36 0.65 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.23 8.02 -51.93 -0.42 0.81 16 37 H 0.07 0.99 8.00 -51.93 -0.42 0.57 16 38 H 0.04 0.59 6.80 -51.93 -0.35 0.24 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 41 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.40 1.61 8.46 -40.82 -0.35 1.27 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.19 0.70 8.06 -52.48 -0.42 0.28 16 47 H 0.22 0.02 8.06 -52.49 -0.42 -0.40 16 48 H 0.09 1.20 6.00 -51.93 -0.31 0.89 16 49 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 50 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 51 H 0.04 0.59 6.90 -51.93 -0.36 0.23 16 LS Contribution 408.98 15.07 6.16 6.16 Total: -1.00 -33.89 408.98 -9.96 -43.85 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -8.35 Total: -1.76 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -2.66 Total: -16.41 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: -0.36 Total: -42.93 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: 0.27 Total: -5.77 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.89 -9.96 -43.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274043153.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.279 kcal (2) G-P(sol) polarization free energy of solvation -33.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds