Wall clock time and date at job start Wed Apr 1 2020 04:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00089 * 2 1 4 4 H 1.48497 * 109.47463 * 240.00000 * 3 2 1 5 5 H 1.48509 * 109.47005 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47160 * 119.99715 * 3 2 1 7 7 C 1.37871 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47349 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47137 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.46962 * 184.83411 * 11 10 9 13 13 C 1.46811 * 110.99972 * 65.89460 * 12 11 10 14 14 C 1.53260 * 109.44083 * 170.80049 * 13 12 11 15 15 C 1.53211 * 108.62476 * 55.58949 * 14 13 12 16 16 C 1.52770 * 117.78936 * 93.97238 * 15 14 13 17 17 C 1.52732 * 117.84743 * 162.98186 * 15 14 13 18 18 H 1.09002 * 117.50389 * 359.73822 * 17 15 14 19 19 C 1.50694 * 117.50403 * 144.79264 * 17 15 14 20 20 O 1.21281 * 120.00212 * 359.97438 * 19 17 15 21 21 N 1.34779 * 120.00185 * 180.02562 * 19 17 15 22 22 C 1.46505 * 120.00200 * 179.97438 * 21 19 17 23 23 C 1.50703 * 109.46850 * 180.02562 * 22 21 19 24 24 C 1.41374 * 128.00793 * 90.00246 * 23 22 21 25 25 N 1.30172 * 106.39500 * 179.97438 * 24 23 22 26 26 O 1.20922 * 111.60625 * 359.97438 * 25 24 23 27 27 C 1.34046 * 111.56546 * 359.76264 * 26 25 24 28 28 C 1.53213 * 114.74146 * 308.58290 * 15 14 13 29 29 C 1.46812 * 111.00132 * 301.18938 * 12 11 10 30 30 H 0.97005 * 119.99722 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.46736 * 60.00525 * 9 7 2 32 32 H 1.09004 * 109.47068 * 300.00744 * 9 7 2 33 33 H 1.09003 * 109.46836 * 60.00509 * 10 9 7 34 34 H 1.08994 * 109.47199 * 300.00744 * 10 9 7 35 35 H 1.09000 * 109.46509 * 64.83475 * 11 10 9 36 36 H 1.08993 * 109.47406 * 304.83882 * 11 10 9 37 37 H 1.08997 * 109.47411 * 50.81112 * 13 12 11 38 38 H 1.09000 * 109.47359 * 290.78948 * 13 12 11 39 39 H 1.09001 * 109.61351 * 295.84568 * 14 13 12 40 40 H 1.09001 * 109.61222 * 175.33119 * 14 13 12 41 41 H 1.08998 * 117.50676 * 215.30309 * 16 15 14 42 42 H 1.09001 * 117.50029 * 0.33966 * 16 15 14 43 43 H 0.97004 * 119.99911 * 359.97438 * 21 19 17 44 44 H 1.09003 * 109.46622 * 299.99288 * 22 21 19 45 45 H 1.08997 * 109.46926 * 59.99906 * 22 21 19 46 46 H 1.08003 * 126.80562 * 359.93175 * 24 23 22 47 47 H 1.07994 * 126.77722 * 180.28334 * 27 26 25 48 48 H 1.08999 * 109.61621 * 171.15648 * 28 15 14 49 49 H 1.08997 * 109.61316 * 291.67351 * 28 15 14 50 50 H 1.09003 * 109.47447 * 309.19197 * 29 12 11 51 51 H 1.08996 * 109.47875 * 69.20717 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 0.0001 12 7 2.4306 -6.1011 0.1168 13 6 3.1050 -6.0829 1.4207 14 6 3.9095 -7.3755 1.5970 15 6 4.8719 -7.5181 0.4135 16 6 6.2935 -6.9850 0.5832 17 6 6.0382 -8.4939 0.5559 18 1 6.1282 -9.0369 1.4967 19 6 6.4671 -9.2500 -0.6751 20 8 5.8910 -9.0725 -1.7274 21 7 7.4905 -10.1244 -0.6064 22 6 7.9072 -10.8599 -1.8029 23 6 9.0620 -11.7651 -1.4593 24 6 9.0143 -13.1041 -1.0082 25 7 10.2494 -13.4799 -0.8415 26 8 11.0253 -12.5942 -1.1166 27 6 10.3862 -11.4862 -1.5176 28 6 4.2177 -7.3810 -0.9651 29 6 3.3950 -6.0882 -0.9901 30 1 -0.4850 0.8401 -0.0004 31 1 0.6242 -2.5567 -0.8904 32 1 0.6246 -2.5570 0.8896 33 1 2.8719 -3.6043 0.8895 34 1 2.8720 -3.6043 -0.8904 35 1 0.9199 -5.0834 -0.9298 36 1 0.7905 -5.0080 0.8437 37 1 2.3610 -6.0070 2.2136 38 1 3.7777 -5.2266 1.4700 39 1 3.2310 -8.2282 1.6217 40 1 4.4770 -7.3293 2.5265 41 1 6.7716 -6.5394 -0.2891 42 1 6.5512 -6.5350 1.5420 43 1 7.9511 -10.2668 0.2354 44 1 7.0735 -11.4586 -2.1700 45 1 8.2152 -10.1542 -2.5743 46 1 8.1286 -13.6975 -0.8353 47 1 10.8379 -10.5545 -1.8243 48 1 4.9893 -7.3385 -1.7338 49 1 3.5640 -8.2342 -1.1463 50 1 2.8602 -6.0160 -1.9371 51 1 4.0605 -5.2318 -0.8823 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274043153.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:13 Heat of formation + Delta-G solvation = 23.411017 kcal Electronic energy + Delta-G solvation = -29653.063027 eV Core-core repulsion = 25555.231425 eV Total energy + Delta-G solvation = -4097.831602 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.98867 -41.51728 -39.87875 -37.77912 -36.58001 -35.55298 -34.40937 -33.45208 -32.74723 -31.86353 -30.78222 -28.49629 -27.54947 -24.95284 -24.79304 -24.22344 -23.88577 -23.13921 -22.37891 -21.71224 -21.09105 -19.34795 -18.90440 -18.57568 -18.49868 -18.00123 -17.03626 -16.67608 -16.43352 -16.27601 -16.17583 -15.95333 -15.61536 -15.36603 -15.11332 -14.71723 -14.49933 -14.33997 -14.12615 -13.93797 -13.84299 -13.42537 -13.39560 -13.31207 -13.05454 -12.79699 -12.72767 -12.56395 -12.38542 -12.35562 -12.29219 -12.16349 -11.53469 -11.42788 -11.37824 -11.32461 -11.31238 -10.89757 -10.77562 -10.69989 -10.55854 -10.28328 -10.10274 -9.09447 -8.20049 -6.32500 0.48038 1.11521 1.37953 1.41104 1.49226 1.51204 2.22768 2.39573 2.40352 2.84702 3.11634 3.11807 3.28583 3.64491 3.69370 3.72482 3.87046 3.90338 3.98694 4.09062 4.13355 4.19301 4.33603 4.38802 4.44065 4.59993 4.62170 4.66665 4.69014 4.72222 4.76415 4.79033 4.88159 4.93180 4.94363 5.00076 5.02693 5.07873 5.11102 5.18497 5.21820 5.27892 5.36212 5.43105 5.48962 5.55149 5.71043 5.83286 6.16480 6.26295 6.29589 6.54655 6.83550 7.24755 7.28270 7.36619 8.90518 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022634 B = 0.001591 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.803912 B =17595.409081 C =18161.186708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.028 3.972 10 C -0.124 4.124 11 C 0.063 3.937 12 N -0.538 5.538 13 C 0.052 3.948 14 C -0.068 4.068 15 C -0.100 4.100 16 C -0.139 4.139 17 C -0.172 4.172 18 H 0.152 0.848 19 C 0.541 3.459 20 O -0.567 6.567 21 N -0.713 5.713 22 C 0.204 3.796 23 C -0.232 4.232 24 C 0.003 3.997 25 N -0.398 5.398 26 O 0.086 5.914 27 C -0.014 4.014 28 C -0.059 4.059 29 C 0.055 3.945 30 H 0.264 0.736 31 H -0.010 1.010 32 H -0.007 1.007 33 H 0.049 0.951 34 H 0.043 0.957 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.029 0.971 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.123 0.877 43 H 0.414 0.586 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.205 0.795 47 H 0.255 0.745 48 H 0.079 0.921 49 H 0.056 0.944 50 H 0.061 0.939 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.016 -26.185 1.636 34.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.163 4.163 11 C -0.065 4.065 12 N -0.261 5.261 13 C -0.075 4.075 14 C -0.105 4.105 15 C -0.101 4.101 16 C -0.176 4.176 17 C -0.193 4.193 18 H 0.169 0.831 19 C 0.329 3.671 20 O -0.446 6.446 21 N -0.366 5.366 22 C 0.081 3.919 23 C -0.236 4.236 24 C -0.176 4.176 25 N -0.104 5.104 26 O 0.025 5.975 27 C -0.096 4.096 28 C -0.096 4.096 29 C -0.073 4.073 30 H 0.073 0.927 31 H 0.008 0.992 32 H 0.011 0.989 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.047 0.953 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.141 0.859 43 H 0.250 0.750 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.222 0.778 47 H 0.270 0.730 48 H 0.097 0.903 49 H 0.074 0.926 50 H 0.080 0.920 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 21.817 -27.573 1.246 35.182 hybrid contribution -0.113 2.276 -0.086 2.280 sum 21.704 -25.298 1.160 33.352 Atomic orbital electron populations 1.70092 1.07746 1.27830 1.51470 1.25979 0.95794 1.03313 0.94665 0.85520 0.78331 0.78166 0.79148 1.19331 1.20617 1.19094 1.21650 0.93310 0.92580 1.50827 0.92658 1.18928 0.94301 0.92963 0.94767 1.21979 0.98715 0.95604 0.99963 1.22133 0.94798 0.87605 1.01935 1.62124 1.18120 1.42779 1.03049 1.22142 0.97062 0.97446 0.90887 1.21206 0.96444 0.96997 0.95887 1.21480 0.89694 1.01880 0.97048 1.23143 0.97872 0.92154 1.04441 1.22336 1.05272 0.93175 0.98483 0.83089 1.20001 0.79009 0.78909 0.89156 1.90708 1.55444 1.65844 1.32576 1.45927 1.34579 1.42433 1.13654 1.19283 0.92734 0.92354 0.87562 1.21309 0.95721 0.95930 1.10669 1.25414 0.96321 0.95369 1.00481 1.73958 1.02989 1.13451 1.20011 1.84849 1.33907 1.17524 1.61231 1.26687 0.91814 0.93572 0.97562 1.21185 0.97969 0.95481 0.94981 1.22156 0.93677 0.97562 0.93929 0.92737 0.99166 0.98855 0.93256 0.93822 0.91723 0.91179 0.90639 0.95317 0.90734 0.88813 0.89253 0.85929 0.74983 0.90626 0.89823 0.77796 0.72950 0.90260 0.92575 0.92035 0.95622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.47 13.29 21.45 0.28 -57.19 16 2 C 0.00 0.02 5.46 84.65 0.46 0.49 16 3 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.55 -31.87 9.11 25.60 0.23 -31.64 16 8 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 9 C 0.03 1.53 4.97 29.85 0.15 1.67 16 10 C -0.12 -5.27 4.44 30.60 0.14 -5.14 16 11 C 0.06 2.29 5.32 86.30 0.46 2.75 16 12 N -0.54 -16.52 4.78 -895.66 -4.28 -20.80 16 13 C 0.05 1.37 4.99 86.41 0.43 1.80 16 14 C -0.07 -1.29 5.87 30.75 0.18 -1.11 16 15 C -0.10 -1.98 2.02 -52.21 -0.11 -2.09 16 16 C -0.14 -2.17 9.62 30.54 0.29 -1.87 16 17 C -0.17 -2.36 5.92 -11.61 -0.07 -2.43 16 18 H 0.15 1.18 8.14 -2.39 -0.02 1.16 16 19 C 0.54 8.89 7.59 87.65 0.67 9.55 16 20 O -0.57 -14.03 13.13 -3.03 -0.04 -14.07 16 21 N -0.71 -6.77 5.55 -466.77 -2.59 -9.36 16 22 C 0.20 1.84 6.25 85.63 0.54 2.38 16 23 C -0.23 -1.69 5.69 -19.74 -0.11 -1.80 16 24 C 0.00 0.03 12.16 85.71 1.04 1.08 16 25 N -0.40 -5.71 12.07 -59.27 -0.72 -6.43 16 26 O 0.09 0.96 11.20 71.58 0.80 1.76 16 27 C -0.01 -0.07 12.26 67.18 0.82 0.76 16 28 C -0.06 -1.52 4.32 30.75 0.13 -1.39 16 29 C 0.05 1.65 4.77 86.41 0.41 2.06 16 30 H 0.26 15.29 8.31 -92.70 -0.77 14.51 16 31 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 32 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 33 H 0.05 2.06 6.54 -2.39 -0.02 2.05 16 34 H 0.04 1.88 6.87 -2.39 -0.02 1.86 16 35 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.07 2.52 8.02 -2.39 -0.02 2.50 16 37 H 0.08 1.94 8.00 -2.39 -0.02 1.92 16 38 H 0.03 0.82 6.80 -2.39 -0.02 0.80 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.09 1.29 8.08 -2.39 -0.02 1.27 16 41 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.41 2.00 8.46 -92.71 -0.78 1.22 16 44 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.21 1.26 8.06 -2.91 -0.02 1.24 16 47 H 0.25 -0.83 8.06 -2.91 -0.02 -0.85 16 48 H 0.08 2.21 6.00 -2.39 -0.01 2.20 16 49 H 0.06 1.61 8.12 -2.39 -0.02 1.59 16 50 H 0.06 1.94 8.09 -2.39 -0.02 1.92 16 51 H 0.03 0.83 6.90 -2.39 -0.02 0.81 16 Total: -1.00 -75.23 408.98 1.30 -73.93 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.15 Total: 10.28 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 5.67 Total: -24.92 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -7.30 Total: -93.77 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.76 Total: -12.31 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -75.23 1.30 -73.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274043153.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.337 kcal (2) G-P(sol) polarization free energy of solvation -75.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds