Wall clock time and date at job start Wed Apr 1 2020 04:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99992 * 2 1 4 4 H 1.48499 * 109.47089 * 239.99509 * 3 2 1 5 5 H 1.48505 * 109.47004 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47285 * 119.99215 * 3 2 1 7 7 C 1.37884 * 120.00422 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00341 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99431 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46805 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47298 * 180.02562 * 10 9 7 12 12 N 1.46899 * 109.47434 * 174.63994 * 11 10 9 13 13 C 1.48635 * 110.99689 * 55.85482 * 12 11 10 14 14 C 1.52216 * 105.91823 * 118.98921 * 13 12 11 15 15 H 1.09003 * 109.74179 * 272.31953 * 14 13 12 16 16 O 1.41231 * 118.46715 * 145.32206 * 14 13 12 17 17 C 1.44015 * 110.57501 * 181.03157 * 16 14 13 18 18 C 1.52576 * 111.74362 * 55.46018 * 17 16 14 19 19 N 1.47881 * 111.74378 * 310.20517 * 18 17 16 20 20 C 1.46895 * 110.99679 * 177.37527 * 19 18 17 21 21 C 1.50704 * 109.47115 * 49.96001 * 20 19 18 22 22 C 1.38093 * 119.58505 * 95.01991 * 21 20 19 23 23 C 1.38784 * 119.28788 * 179.97438 * 22 21 20 24 24 C 1.38422 * 118.48382 * 359.75007 * 23 22 21 25 25 C 1.38873 * 119.11164 * 0.48929 * 24 23 22 26 26 O 1.35684 * 119.68089 * 179.77327 * 25 24 23 27 27 N 1.31927 * 119.58213 * 274.99530 * 21 20 19 28 28 C 1.45564 * 107.93010 * 55.52450 * 19 18 17 29 29 H 1.09000 * 110.52172 * 56.91958 * 28 19 18 30 30 C 1.49038 * 111.00022 * 176.31435 * 12 11 10 31 31 H 0.96997 * 120.00520 * 0.02562 * 1 2 3 32 32 H 1.08994 * 109.47128 * 59.99719 * 9 7 2 33 33 H 1.09001 * 109.47260 * 299.99264 * 9 7 2 34 34 H 1.09003 * 109.46950 * 60.00018 * 10 9 7 35 35 H 1.08999 * 109.47332 * 300.00455 * 10 9 7 36 36 H 1.08998 * 109.46966 * 54.64206 * 11 10 9 37 37 H 1.09006 * 109.46810 * 294.64266 * 11 10 9 38 38 H 1.09008 * 110.15944 * 238.10116 * 13 12 11 39 39 H 1.08993 * 110.16621 * 359.87202 * 13 12 11 40 40 H 1.09003 * 109.02512 * 176.04279 * 17 16 14 41 41 H 1.08999 * 109.02855 * 294.94835 * 17 16 14 42 42 H 1.09010 * 109.02051 * 189.62323 * 18 17 16 43 43 H 1.08996 * 109.02613 * 70.79592 * 18 17 16 44 44 H 1.08995 * 109.47336 * 289.95450 * 20 19 18 45 45 H 1.09005 * 109.46959 * 169.95425 * 20 19 18 46 46 H 1.08000 * 120.35454 * 359.95601 * 22 21 20 47 47 H 1.08002 * 120.75538 * 180.02562 * 23 22 21 48 48 H 1.07998 * 120.44172 * 180.24635 * 24 23 22 49 49 H 0.96699 * 113.99697 * 269.72608 * 26 25 24 50 50 H 1.09005 * 110.61544 * 95.06658 * 30 12 11 51 51 H 1.08996 * 110.75245 * 332.13379 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 -0.0001 12 7 2.4298 -6.1006 -0.1295 13 6 3.4576 -6.0515 0.9431 14 6 3.3029 -7.3459 1.7291 15 1 2.5621 -7.2117 2.5174 16 8 4.4615 -7.9518 2.2631 17 6 4.1240 -9.1721 2.9494 18 6 3.3613 -10.1363 2.0458 19 7 2.2275 -9.4714 1.3682 20 6 1.5431 -10.3973 0.4559 21 6 1.2344 -11.6814 1.1820 22 6 -0.0063 -11.8546 1.7631 23 6 -0.2842 -13.0398 2.4297 24 6 0.6984 -14.0133 2.4830 25 6 1.9253 -13.7686 1.8802 26 8 2.8984 -14.7130 1.9294 27 7 2.1526 -12.6259 1.2539 28 6 2.7494 -8.3194 0.6475 29 1 3.5259 -8.6266 -0.0531 30 6 1.7286 -7.4130 -0.0449 31 1 -0.4851 0.8400 -0.0004 32 1 0.6248 -2.5571 -0.8896 33 1 0.6242 -2.5568 0.8904 34 1 2.8720 -3.6043 0.8905 35 1 2.8721 -3.6043 -0.8894 36 1 0.7841 -5.0042 -0.8385 37 1 0.9274 -5.0878 0.9338 38 1 4.4545 -5.9943 0.5059 39 1 3.2820 -5.1942 1.5929 40 1 5.0408 -9.6537 3.2895 41 1 3.5059 -8.9337 3.8150 42 1 2.9809 -10.9617 2.6478 43 1 4.0428 -10.5321 1.2929 44 1 2.1869 -10.6084 -0.3979 45 1 0.6147 -9.9445 0.1078 46 1 -0.7522 -11.0762 1.6998 47 1 -1.2467 -13.2005 2.8925 48 1 0.5147 -14.9490 2.9901 49 1 3.4836 -14.6350 2.6952 50 1 1.4954 -7.7885 -1.0413 51 1 0.8219 -7.3285 0.5541 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277949086.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:54 Heat of formation + Delta-G solvation = -21.112928 kcal Electronic energy + Delta-G solvation = -30562.142509 eV Core-core repulsion = 26462.380204 eV Total energy + Delta-G solvation = -4099.762305 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.24680 -40.50394 -37.88215 -37.45146 -36.16376 -34.02460 -33.00772 -32.09704 -31.47675 -30.15739 -28.74714 -28.31400 -26.48774 -24.99404 -23.81559 -23.34091 -22.72847 -22.12037 -20.96620 -20.51398 -19.46886 -19.04220 -17.18762 -16.92991 -16.69992 -16.66291 -16.18761 -16.01135 -15.80869 -15.39224 -15.18728 -14.64195 -14.52273 -14.45658 -14.21654 -13.87010 -13.45355 -13.28179 -13.20456 -12.94752 -12.65410 -12.54474 -12.34967 -12.19132 -12.10871 -11.77090 -11.57437 -11.38648 -11.17514 -11.13516 -10.81917 -10.70926 -10.51802 -10.44494 -10.36146 -9.93286 -9.70384 -9.59435 -9.36266 -9.30875 -9.04108 -8.76215 -8.31216 -8.16086 -5.96838 -3.98735 0.48880 0.71192 2.87628 3.23534 3.36208 3.40100 3.42715 3.43186 3.52851 3.98042 4.17097 4.25258 4.38573 4.49692 4.55338 4.56496 4.59452 4.83587 4.85589 4.93818 4.96959 5.03797 5.05728 5.16623 5.29651 5.30865 5.32903 5.38952 5.54772 5.56640 5.62208 5.64993 5.69318 5.71466 5.73651 5.88047 5.95503 5.99756 6.05901 6.30111 6.45824 6.56269 6.69681 6.77738 6.93329 6.98448 7.03102 7.21472 7.31684 7.44672 7.70937 7.85655 8.03401 8.46679 9.08148 9.65044 11.14516 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024203 B = 0.001843 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.625908 B =15187.624866 C =15870.806562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.110 4.110 11 C 0.050 3.950 12 N -0.516 5.516 13 C 0.050 3.950 14 C 0.070 3.930 15 H 0.070 0.930 16 O -0.363 6.363 17 C 0.062 3.938 18 C 0.022 3.978 19 N -0.506 5.506 20 C 0.096 3.904 21 C 0.156 3.844 22 C -0.160 4.160 23 C -0.059 4.059 24 C -0.188 4.188 25 C 0.309 3.691 26 O -0.483 6.483 27 N -0.499 5.499 28 C 0.027 3.973 29 H 0.070 0.930 30 C 0.050 3.950 31 H 0.260 0.740 32 H 0.016 0.984 33 H 0.014 0.986 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.031 0.969 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.056 0.944 42 H 0.082 0.918 43 H 0.051 0.949 44 H 0.060 0.940 45 H 0.100 0.900 46 H 0.143 0.857 47 H 0.142 0.858 48 H 0.140 0.860 49 H 0.400 0.600 50 H 0.082 0.918 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.613 -30.943 7.378 31.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.147 4.147 11 C -0.078 4.078 12 N -0.242 5.242 13 C -0.078 4.078 14 C 0.011 3.989 15 H 0.088 0.912 16 O -0.281 6.281 17 C -0.015 4.015 18 C -0.106 4.106 19 N -0.231 5.231 20 C -0.032 4.032 21 C 0.019 3.981 22 C -0.181 4.181 23 C -0.085 4.085 24 C -0.209 4.209 25 C 0.130 3.870 26 O -0.290 6.290 27 N -0.219 5.219 28 C -0.082 4.082 29 H 0.087 0.913 30 C -0.077 4.077 31 H 0.070 0.930 32 H 0.035 0.965 33 H 0.032 0.968 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.049 0.951 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.116 0.884 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.118 0.882 46 H 0.161 0.839 47 H 0.159 0.841 48 H 0.158 0.842 49 H 0.258 0.742 50 H 0.100 0.900 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.110 -30.653 6.348 31.374 hybrid contribution -0.241 0.221 1.040 1.090 sum 1.869 -30.432 7.389 31.371 Atomic orbital electron populations 1.69951 1.06038 1.26643 1.50976 1.25027 0.94850 0.99234 0.95404 0.86660 0.79573 0.83148 0.78628 1.20231 1.21347 1.20277 1.21216 0.93028 0.91041 1.50410 0.92710 1.19062 0.93981 0.91313 0.97132 1.21752 0.99283 0.92792 1.00922 1.22512 0.94247 0.90913 1.00101 1.64577 1.13968 1.01809 1.43849 1.22545 0.98180 0.94630 0.92484 1.22922 0.87450 0.93670 0.94903 0.91223 1.88009 1.30408 1.36619 1.73032 1.22710 0.99780 0.84902 0.94111 1.22803 0.92250 0.97004 0.98531 1.63119 1.25445 1.06616 1.27895 1.21177 1.00690 0.87798 0.93509 1.20797 0.89220 0.93293 0.94821 1.22021 0.98133 0.98739 0.99199 1.21556 0.99122 0.92280 0.95548 1.22123 0.94621 1.01572 1.02584 1.19129 0.88265 0.86385 0.93207 1.84800 1.44989 1.47703 1.51501 1.67002 1.36004 1.01281 1.17565 1.23211 0.97587 0.91422 0.96004 0.91254 1.22702 0.95514 0.89349 1.00184 0.93009 0.96525 0.96806 0.93292 0.92342 0.90663 0.95077 0.89509 0.90092 0.88377 0.92520 0.89955 0.93106 0.92214 0.88178 0.83929 0.84065 0.84201 0.74221 0.90006 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.26 4.84 -26.73 -0.13 -2.39 16 11 C 0.05 0.85 4.85 -3.83 -0.02 0.83 16 12 N -0.52 -7.73 5.33 -231.71 -1.23 -8.96 16 13 C 0.05 0.72 6.19 -3.26 -0.02 0.70 16 14 C 0.07 0.91 3.02 -25.70 -0.08 0.84 16 15 H 0.07 0.93 8.06 -51.93 -0.42 0.51 16 16 O -0.36 -4.75 10.93 -35.00 -0.38 -5.13 16 17 C 0.06 0.62 6.83 36.94 0.25 0.87 16 18 C 0.02 0.22 4.62 -3.50 -0.02 0.20 16 19 N -0.51 -5.16 4.91 -226.78 -1.11 -6.27 16 20 C 0.10 0.86 5.22 -4.98 -0.03 0.84 16 21 C 0.16 1.39 5.09 -82.60 -0.42 0.97 16 22 C -0.16 -1.13 9.71 -39.43 -0.38 -1.51 16 23 C -0.06 -0.34 10.17 -39.31 -0.40 -0.74 16 24 C -0.19 -1.20 10.04 -39.28 -0.39 -1.59 16 25 C 0.31 2.60 7.74 -17.13 -0.13 2.47 16 26 O -0.48 -3.52 13.56 -18.76 -0.25 -3.77 16 27 N -0.50 -4.93 8.81 -9.55 -0.08 -5.02 16 28 C 0.03 0.32 2.15 -66.97 -0.14 0.18 16 29 H 0.07 0.89 8.12 -51.93 -0.42 0.47 16 30 C 0.05 0.62 5.94 -2.60 -0.02 0.60 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.99 6.37 -51.93 -0.33 0.66 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.03 0.53 8.02 -51.93 -0.42 0.11 16 38 H 0.09 1.28 8.14 -51.92 -0.42 0.85 16 39 H 0.08 1.24 5.94 -51.93 -0.31 0.93 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 42 H 0.08 0.78 6.30 -51.92 -0.33 0.45 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.58 8.07 -51.93 -0.42 0.17 16 45 H 0.10 0.76 7.80 -51.93 -0.40 0.36 16 46 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 47 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 48 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 49 H 0.40 0.94 9.06 45.56 0.41 1.36 16 50 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 51 H 0.06 0.72 7.77 -51.93 -0.40 0.32 16 LS Contribution 402.65 15.07 6.07 6.07 Total: -1.00 -33.46 402.65 -11.41 -44.87 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -7.65 Total: -1.39 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -2.47 Total: -10.91 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: -1.70 Total: -46.58 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.64 Total: -8.90 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.46 -11.41 -44.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277949086.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.761 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds