Wall clock time and date at job start Wed Apr 1 2020 04:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99992 * 2 1 4 4 H 1.48499 * 109.47089 * 239.99509 * 3 2 1 5 5 H 1.48505 * 109.47004 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47285 * 119.99215 * 3 2 1 7 7 C 1.37884 * 120.00422 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00341 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99431 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46805 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47298 * 180.02562 * 10 9 7 12 12 N 1.46899 * 109.47434 * 174.63994 * 11 10 9 13 13 C 1.48635 * 110.99689 * 55.85482 * 12 11 10 14 14 C 1.52216 * 105.91823 * 118.98921 * 13 12 11 15 15 H 1.09003 * 109.74179 * 272.31953 * 14 13 12 16 16 O 1.41231 * 118.46715 * 145.32206 * 14 13 12 17 17 C 1.44015 * 110.57501 * 181.03157 * 16 14 13 18 18 C 1.52576 * 111.74362 * 55.46018 * 17 16 14 19 19 N 1.47881 * 111.74378 * 310.20517 * 18 17 16 20 20 C 1.46895 * 110.99679 * 177.37527 * 19 18 17 21 21 C 1.50704 * 109.47115 * 49.96001 * 20 19 18 22 22 C 1.38093 * 119.58505 * 95.01991 * 21 20 19 23 23 C 1.38784 * 119.28788 * 179.97438 * 22 21 20 24 24 C 1.38422 * 118.48382 * 359.75007 * 23 22 21 25 25 C 1.38873 * 119.11164 * 0.48929 * 24 23 22 26 26 O 1.35684 * 119.68089 * 179.77327 * 25 24 23 27 27 N 1.31927 * 119.58213 * 274.99530 * 21 20 19 28 28 C 1.45564 * 107.93010 * 55.52450 * 19 18 17 29 29 H 1.09000 * 110.52172 * 56.91958 * 28 19 18 30 30 C 1.49038 * 111.00022 * 176.31435 * 12 11 10 31 31 H 0.96997 * 120.00520 * 0.02562 * 1 2 3 32 32 H 1.08994 * 109.47128 * 59.99719 * 9 7 2 33 33 H 1.09001 * 109.47260 * 299.99264 * 9 7 2 34 34 H 1.09003 * 109.46950 * 60.00018 * 10 9 7 35 35 H 1.08999 * 109.47332 * 300.00455 * 10 9 7 36 36 H 1.08998 * 109.46966 * 54.64206 * 11 10 9 37 37 H 1.09006 * 109.46810 * 294.64266 * 11 10 9 38 38 H 1.09008 * 110.15944 * 238.10116 * 13 12 11 39 39 H 1.08993 * 110.16621 * 359.87202 * 13 12 11 40 40 H 1.09003 * 109.02512 * 176.04279 * 17 16 14 41 41 H 1.08999 * 109.02855 * 294.94835 * 17 16 14 42 42 H 1.09010 * 109.02051 * 189.62323 * 18 17 16 43 43 H 1.08996 * 109.02613 * 70.79592 * 18 17 16 44 44 H 1.08995 * 109.47336 * 289.95450 * 20 19 18 45 45 H 1.09005 * 109.46959 * 169.95425 * 20 19 18 46 46 H 1.08000 * 120.35454 * 359.95601 * 22 21 20 47 47 H 1.08002 * 120.75538 * 180.02562 * 23 22 21 48 48 H 1.07998 * 120.44172 * 180.24635 * 24 23 22 49 49 H 0.96699 * 113.99697 * 269.72608 * 26 25 24 50 50 H 1.09005 * 110.61544 * 95.06658 * 30 12 11 51 51 H 1.08996 * 110.75245 * 332.13379 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 -0.0001 12 7 2.4298 -6.1006 -0.1295 13 6 3.4576 -6.0515 0.9431 14 6 3.3029 -7.3459 1.7291 15 1 2.5621 -7.2117 2.5174 16 8 4.4615 -7.9518 2.2631 17 6 4.1240 -9.1721 2.9494 18 6 3.3613 -10.1363 2.0458 19 7 2.2275 -9.4714 1.3682 20 6 1.5431 -10.3973 0.4559 21 6 1.2344 -11.6814 1.1820 22 6 -0.0063 -11.8546 1.7631 23 6 -0.2842 -13.0398 2.4297 24 6 0.6984 -14.0133 2.4830 25 6 1.9253 -13.7686 1.8802 26 8 2.8984 -14.7130 1.9294 27 7 2.1526 -12.6259 1.2539 28 6 2.7494 -8.3194 0.6475 29 1 3.5259 -8.6266 -0.0531 30 6 1.7286 -7.4130 -0.0449 31 1 -0.4851 0.8400 -0.0004 32 1 0.6248 -2.5571 -0.8896 33 1 0.6242 -2.5568 0.8904 34 1 2.8720 -3.6043 0.8905 35 1 2.8721 -3.6043 -0.8894 36 1 0.7841 -5.0042 -0.8385 37 1 0.9274 -5.0878 0.9338 38 1 4.4545 -5.9943 0.5059 39 1 3.2820 -5.1942 1.5929 40 1 5.0408 -9.6537 3.2895 41 1 3.5059 -8.9337 3.8150 42 1 2.9809 -10.9617 2.6478 43 1 4.0428 -10.5321 1.2929 44 1 2.1869 -10.6084 -0.3979 45 1 0.6147 -9.9445 0.1078 46 1 -0.7522 -11.0762 1.6998 47 1 -1.2467 -13.2005 2.8925 48 1 0.5147 -14.9490 2.9901 49 1 3.4836 -14.6350 2.6952 50 1 1.4954 -7.7885 -1.0413 51 1 0.8219 -7.3285 0.5541 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277949086.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:53 Heat of formation + Delta-G solvation = -48.573778 kcal Electronic energy + Delta-G solvation = -30563.333301 eV Core-core repulsion = 26462.380204 eV Total energy + Delta-G solvation = -4100.953097 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.98663 -41.27434 -38.76994 -38.28089 -36.96344 -35.85568 -33.96705 -33.46402 -32.10612 -31.47725 -29.77582 -29.35955 -27.85120 -26.20620 -24.47091 -24.38139 -23.91151 -22.88008 -22.45380 -21.44203 -20.89656 -19.57852 -18.47817 -17.90030 -17.67204 -17.52123 -17.20799 -16.85905 -16.61766 -16.44004 -16.27483 -16.16897 -15.85720 -15.44161 -15.12499 -14.67077 -14.46451 -14.29564 -14.17225 -14.07669 -13.76415 -13.70473 -13.41704 -13.26080 -13.05553 -12.90130 -12.68973 -12.67026 -12.54455 -12.35763 -12.28244 -12.22529 -12.09007 -11.71613 -11.44142 -11.32530 -11.07781 -10.88134 -10.66623 -10.51985 -10.38955 -9.93418 -9.56868 -9.37233 -8.17901 -6.28306 -0.02916 0.22020 1.41244 1.44213 1.52031 2.29315 2.42620 2.46548 2.65116 2.78458 3.14092 3.15106 3.31064 3.49393 3.63918 3.78691 3.91782 4.00040 4.06139 4.07679 4.15465 4.19392 4.21902 4.29074 4.30241 4.39366 4.44020 4.49830 4.56064 4.63876 4.68902 4.72287 4.76209 4.77363 4.83314 4.86479 4.93368 5.01211 5.11679 5.13786 5.20507 5.25299 5.53561 5.55759 5.63935 5.70552 5.76033 5.88284 5.90412 6.01216 6.03605 6.29310 6.60736 6.88054 6.92193 7.40396 8.93591 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024203 B = 0.001843 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.625908 B =15187.624866 C =15870.806562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.027 3.973 10 C -0.095 4.095 11 C 0.063 3.937 12 N -0.524 5.524 13 C 0.049 3.951 14 C 0.074 3.926 15 H 0.067 0.933 16 O -0.382 6.382 17 C 0.058 3.942 18 C 0.032 3.968 19 N -0.504 5.504 20 C 0.098 3.902 21 C 0.138 3.862 22 C -0.163 4.163 23 C -0.055 4.055 24 C -0.184 4.184 25 C 0.293 3.707 26 O -0.496 6.496 27 N -0.528 5.528 28 C 0.041 3.959 29 H 0.057 0.943 30 C 0.055 3.945 31 H 0.263 0.737 32 H -0.006 1.006 33 H -0.007 1.007 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.033 0.967 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.118 0.882 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.037 0.963 44 H 0.047 0.953 45 H 0.114 0.886 46 H 0.158 0.842 47 H 0.172 0.828 48 H 0.162 0.838 49 H 0.418 0.582 50 H 0.095 0.905 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.445 -32.105 8.268 33.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.133 4.133 11 C -0.064 4.064 12 N -0.249 5.249 13 C -0.079 4.079 14 C 0.014 3.986 15 H 0.085 0.915 16 O -0.299 6.299 17 C -0.018 4.018 18 C -0.096 4.096 19 N -0.229 5.229 20 C -0.029 4.029 21 C 0.001 3.999 22 C -0.184 4.184 23 C -0.081 4.081 24 C -0.205 4.205 25 C 0.114 3.886 26 O -0.306 6.306 27 N -0.249 5.249 28 C -0.069 4.069 29 H 0.074 0.926 30 C -0.073 4.073 31 H 0.072 0.928 32 H 0.012 0.988 33 H 0.011 0.989 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.051 0.949 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.136 0.864 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.132 0.868 46 H 0.176 0.824 47 H 0.190 0.810 48 H 0.180 0.820 49 H 0.278 0.722 50 H 0.113 0.887 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.960 -31.841 7.250 32.714 hybrid contribution -0.187 0.475 0.797 0.947 sum 1.773 -31.366 8.047 32.430 Atomic orbital electron populations 1.70079 1.07671 1.27772 1.51683 1.25962 0.95799 1.03254 0.94815 0.85531 0.78308 0.78265 0.79128 1.19314 1.20752 1.19249 1.21664 0.93481 0.92472 1.50482 0.92415 1.18956 0.94349 0.92845 0.94930 1.21498 0.98124 0.92921 1.00719 1.22223 0.93989 0.89993 1.00238 1.64510 1.13808 1.02368 1.44241 1.22467 0.97746 0.95273 0.92376 1.22764 0.87508 0.93304 0.94993 0.91469 1.87983 1.30673 1.37838 1.73454 1.22919 1.01028 0.83907 0.93940 1.22714 0.91843 0.96957 0.98113 1.63129 1.25319 1.06598 1.27859 1.21195 1.00749 0.88072 0.92896 1.20793 0.90095 0.93068 0.95959 1.22239 0.97644 0.99720 0.98747 1.21936 1.00117 0.91371 0.94643 1.22389 0.93767 1.02528 1.01836 1.19405 0.89266 0.86248 0.93717 1.84753 1.45452 1.47522 1.52887 1.66919 1.37057 1.02224 1.18668 1.22986 0.96956 0.91757 0.95231 0.92554 1.22731 0.95516 0.87847 1.01194 0.92789 0.98760 0.98903 0.93017 0.92922 0.90662 0.94860 0.89995 0.91172 0.86393 0.91874 0.89309 0.94449 0.93507 0.86786 0.82448 0.81033 0.82029 0.72189 0.88703 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.98 13.29 21.45 0.28 -56.70 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.54 -31.37 9.11 25.60 0.23 -31.14 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.09 -3.96 4.84 30.59 0.15 -3.81 16 11 C 0.06 2.16 4.85 86.30 0.42 2.58 16 12 N -0.52 -15.44 5.33 -886.99 -4.72 -20.16 16 13 C 0.05 1.42 6.19 85.71 0.53 1.96 16 14 C 0.07 1.89 3.02 31.26 0.09 1.99 16 15 H 0.07 1.75 8.06 -2.39 -0.02 1.73 16 16 O -0.38 -9.76 10.93 -148.17 -1.62 -11.38 16 17 C 0.06 1.10 6.83 71.84 0.49 1.59 16 18 C 0.03 0.60 4.62 85.97 0.40 1.00 16 19 N -0.50 -9.82 4.91 -871.40 -4.28 -14.09 16 20 C 0.10 1.69 5.22 85.56 0.45 2.13 16 21 C 0.14 2.30 5.09 42.51 0.22 2.52 16 22 C -0.16 -1.96 9.71 22.37 0.22 -1.74 16 23 C -0.06 -0.49 10.17 22.44 0.23 -0.26 16 24 C -0.18 -1.94 10.04 22.47 0.23 -1.71 16 25 C 0.29 4.60 7.74 84.78 0.66 5.25 16 26 O -0.50 -6.81 13.56 -90.03 -1.22 -8.03 16 27 N -0.53 -10.14 8.81 -296.97 -2.62 -12.75 16 28 C 0.04 0.92 2.15 46.12 0.10 1.02 16 29 H 0.06 1.45 8.12 -2.39 -0.02 1.43 16 30 C 0.05 1.27 5.94 85.91 0.51 1.78 16 31 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 32 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 33 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 34 H 0.05 2.11 6.37 -2.39 -0.02 2.10 16 35 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.03 1.12 8.02 -2.38 -0.02 1.10 16 38 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 39 H 0.07 2.16 5.94 -2.39 -0.01 2.15 16 40 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 42 H 0.09 1.59 6.30 -2.38 -0.02 1.58 16 43 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.05 0.92 8.07 -2.39 -0.02 0.90 16 45 H 0.11 1.57 7.80 -2.38 -0.02 1.55 16 46 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 47 H 0.17 0.41 8.06 -2.91 -0.02 0.39 16 48 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 49 H 0.42 1.63 9.06 -74.06 -0.67 0.96 16 50 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 51 H 0.07 1.50 7.77 -2.39 -0.02 1.48 16 Total: -1.00 -72.38 402.65 -6.37 -78.76 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.25 Total: 12.39 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 5.52 Total: -14.84 kcal Atomic # 7 Polarization: -92.37 SS G_CDS: -11.33 Total: -103.70 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -2.84 Total: -19.41 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -72.38 -6.37 -78.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277949086.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.181 kcal (2) G-P(sol) polarization free energy of solvation -72.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds