Wall clock time and date at job start Wed Apr 1 2020 05:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 110.34564 * 2 1 4 4 O 1.21272 * 120.00267 * 119.16797 * 3 2 1 5 5 N 1.34778 * 119.99660 * 299.16362 * 3 2 1 6 6 C 1.46499 * 119.99670 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.46992 * 179.97438 * 6 5 3 8 8 H 1.08995 * 115.49644 * 330.39155 * 7 6 5 9 9 C 1.52998 * 117.44409 * 184.99779 * 7 6 5 10 10 H 1.08999 * 119.52452 * 5.65365 * 9 7 6 11 11 C 1.54380 * 118.12711 * 160.68881 * 9 7 6 12 12 N 1.48561 * 104.59504 * 89.19919 * 11 9 7 13 13 C 1.46900 * 111.00071 * 200.96234 * 12 11 9 14 14 C 1.50705 * 109.47008 * 285.41737 * 13 12 11 15 15 O 1.21289 * 119.99778 * 359.97438 * 14 13 12 16 16 N 1.34771 * 120.00078 * 180.02562 * 14 13 12 17 17 C 1.37093 * 120.00081 * 179.97438 * 16 14 13 18 18 H 1.07997 * 119.99875 * 0.02562 * 17 16 14 19 19 C 1.38949 * 120.00206 * 179.97438 * 17 16 14 20 20 N 1.31416 * 119.99990 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00033 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46977 * 60.00582 * 21 19 17 23 23 H 1.48502 * 109.46965 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47538 * 300.00538 * 21 19 17 25 25 C 1.48566 * 104.22161 * 320.51415 * 12 11 9 26 26 C 1.54264 * 61.46087 * 253.24764 * 9 7 6 27 27 H 1.08998 * 121.78204 * 108.84259 * 26 9 7 28 28 C 1.51100 * 110.38494 * 237.70745 * 2 1 3 29 29 C 1.30530 * 111.10035 * 224.63722 * 28 2 1 30 30 C 1.51096 * 111.10967 * 0.02562 * 29 28 2 31 31 C 1.54635 * 110.47969 * 122.34916 * 2 1 3 32 32 H 1.09001 * 109.47471 * 59.30207 * 1 2 3 33 33 H 1.08996 * 109.47657 * 179.30363 * 1 2 3 34 34 H 1.09000 * 109.47513 * 299.30305 * 1 2 3 35 35 H 0.97000 * 120.00401 * 359.97438 * 5 3 2 36 36 H 1.08998 * 109.47100 * 60.00369 * 6 5 3 37 37 H 1.08999 * 109.47488 * 299.99467 * 6 5 3 38 38 H 1.08999 * 110.41492 * 330.42141 * 11 9 7 39 39 H 1.09001 * 110.51208 * 208.02511 * 11 9 7 40 40 H 1.09004 * 109.47297 * 45.41189 * 13 12 11 41 41 H 1.09004 * 109.47326 * 165.41960 * 13 12 11 42 42 H 0.97002 * 119.99891 * 359.97438 * 16 14 13 43 43 H 0.97001 * 119.99975 * 179.97438 * 20 19 17 44 44 H 1.08999 * 110.41049 * 158.25953 * 25 12 11 45 45 H 1.08999 * 110.41330 * 280.70901 * 25 12 11 46 46 H 1.07992 * 124.44841 * 44.62025 * 28 2 1 47 47 H 1.08001 * 124.44263 * 180.02562 * 29 28 2 48 48 H 1.09001 * 110.38899 * 135.24643 * 30 29 28 49 49 H 1.09004 * 110.38677 * 257.51332 * 30 29 28 50 50 H 1.09001 * 111.03805 * 261.52447 * 31 2 1 51 51 H 1.08996 * 111.04199 * 25.46133 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0539 1.4130 0.0000 4 8 2.7447 1.8036 0.9170 5 7 1.7549 2.2425 -1.0193 6 6 2.2647 3.6159 -1.0196 7 6 1.7833 4.3384 -2.2795 8 1 1.6228 3.7044 -3.1514 9 6 2.3080 5.7545 -2.5243 10 1 3.0672 6.1683 -1.8606 11 6 2.2216 6.3253 -3.9561 12 7 0.8894 6.9797 -4.0185 13 6 0.4430 7.1335 -5.4096 14 6 1.2147 8.2503 -6.0641 15 8 2.0535 8.8585 -5.4337 16 7 0.9720 8.5739 -7.3497 17 6 1.6736 9.5901 -7.9450 18 1 2.4211 10.1312 -7.3839 19 6 1.4237 9.9234 -9.2706 20 7 0.5145 9.2647 -9.9536 21 14 2.3792 11.3086 -10.0815 22 1 3.8293 10.9889 -10.0592 23 1 1.9278 11.4644 -11.4876 24 1 2.1400 12.5741 -9.3422 25 6 -0.0051 6.0584 -3.2712 26 6 0.8431 5.5789 -2.0738 27 1 0.5119 5.8620 -1.0747 28 6 2.0563 -0.7567 -1.1973 29 6 3.0322 -1.5540 -0.8574 30 6 3.3191 -1.4626 0.6233 31 6 2.0710 -0.7751 1.2238 32 1 -0.3634 0.5246 -0.8836 33 1 -0.3634 -1.0275 -0.0125 34 1 -0.3634 0.5030 0.8961 35 1 1.2027 1.9300 -1.7530 36 1 3.3544 3.5990 -1.0049 37 1 1.8975 4.1401 -0.1372 38 1 2.2854 5.5221 -4.6901 39 1 3.0124 7.0564 -4.1241 40 1 0.6180 6.2044 -5.9521 41 1 -0.6211 7.3690 -5.4258 42 1 0.3008 8.0876 -7.8538 43 1 0.3398 9.4976 -10.8789 44 1 -0.8907 6.5890 -2.9215 45 1 -0.2898 5.2133 -3.8980 46 1 1.6749 -0.6518 -2.2022 47 1 3.5648 -2.1950 -1.5444 48 1 3.4458 -2.4585 1.0478 49 1 4.2090 -0.8588 0.8010 50 1 2.3484 -0.0931 2.0276 51 1 1.3475 -1.5127 1.5710 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282878698.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:06 Heat of formation + Delta-G solvation = -38.132805 kcal Electronic energy + Delta-G solvation = -29562.391490 eV Core-core repulsion = 25461.891148 eV Total energy + Delta-G solvation = -4100.500343 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.66167 -41.04484 -39.75637 -38.62248 -36.54154 -35.88852 -34.68758 -33.25181 -32.48043 -30.10424 -29.65848 -29.35855 -27.77509 -26.27812 -25.71276 -23.43965 -22.67106 -21.78771 -21.29805 -20.86897 -20.73273 -19.86266 -19.72284 -18.14115 -17.74050 -17.27898 -16.84062 -16.62407 -16.44293 -16.19304 -15.94547 -15.92026 -15.47899 -15.31729 -14.83685 -14.49889 -14.41149 -14.33645 -13.95774 -13.87209 -13.50211 -13.48731 -13.25452 -13.15856 -12.95827 -12.86534 -12.75524 -12.51614 -12.43761 -12.32778 -12.19187 -12.13903 -12.10232 -12.08623 -11.69542 -11.48738 -11.23674 -10.90915 -10.87552 -10.31581 -10.08817 -10.00356 -9.84339 -9.32415 -8.46234 -5.94818 1.18870 1.39483 1.41276 1.52045 1.66443 2.06313 2.10217 2.27980 2.45712 2.84309 3.20332 3.28781 3.46734 3.49083 3.63272 3.67776 3.79148 3.97714 4.07280 4.10398 4.14213 4.22994 4.28603 4.32533 4.41790 4.46121 4.48839 4.54790 4.55684 4.58154 4.66206 4.73100 4.81731 4.82038 4.93243 4.94544 5.01947 5.05349 5.12397 5.18466 5.22981 5.25814 5.33902 5.40813 5.44206 5.52730 5.84399 5.89985 5.92562 6.09102 6.52051 6.61618 7.13670 7.21492 7.57241 8.13874 8.70908 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024108 B = 0.001574 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.146026 B =17789.167651 C =18028.591234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.057 4.057 3 C 0.526 3.474 4 O -0.583 6.583 5 N -0.710 5.710 6 C 0.158 3.842 7 C -0.110 4.110 8 H 0.124 0.876 9 C -0.157 4.157 10 H 0.115 0.885 11 C 0.067 3.933 12 N -0.513 5.513 13 C 0.048 3.952 14 C 0.440 3.560 15 O -0.618 6.618 16 N -0.574 5.574 17 C -0.334 4.334 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.992 3.008 22 H -0.273 1.273 23 H -0.269 1.269 24 H -0.273 1.273 25 C 0.059 3.941 26 C -0.147 4.147 27 H 0.131 0.869 28 C -0.168 4.168 29 C -0.153 4.153 30 C -0.109 4.109 31 C -0.112 4.112 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.415 0.585 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.047 0.953 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.112 0.888 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.095 0.905 45 H 0.064 0.936 46 H 0.151 0.849 47 H 0.144 0.856 48 H 0.088 0.912 49 H 0.060 0.940 50 H 0.067 0.933 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.733 -25.623 16.986 30.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.061 4.061 3 C 0.313 3.687 4 O -0.463 6.463 5 N -0.362 5.362 6 C 0.034 3.966 7 C -0.129 4.129 8 H 0.142 0.858 9 C -0.177 4.177 10 H 0.133 0.867 11 C -0.060 4.060 12 N -0.237 5.237 13 C -0.083 4.083 14 C 0.228 3.772 15 O -0.504 6.504 16 N -0.212 5.212 17 C -0.464 4.464 18 H 0.095 0.905 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.815 3.185 22 H -0.198 1.198 23 H -0.194 1.194 24 H -0.198 1.198 25 C -0.067 4.067 26 C -0.166 4.166 27 H 0.149 0.851 28 C -0.185 4.185 29 C -0.170 4.170 30 C -0.146 4.146 31 C -0.150 4.150 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.252 0.748 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.130 0.870 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.113 0.887 45 H 0.082 0.918 46 H 0.168 0.832 47 H 0.162 0.838 48 H 0.106 0.894 49 H 0.079 0.921 50 H 0.086 0.914 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.769 -24.328 18.062 30.426 hybrid contribution 0.201 0.117 -1.566 1.583 sum -2.567 -24.211 16.495 29.409 Atomic orbital electron populations 1.21811 0.90148 1.04099 1.02983 1.20677 0.98519 0.90255 0.96602 1.20871 0.79069 0.87745 0.81009 1.90668 1.40227 1.77930 1.37493 1.45839 1.53666 1.12079 1.24645 1.20666 0.98407 0.81474 0.96069 1.23152 1.01438 0.89368 0.98897 0.85817 1.23348 0.99127 0.98336 0.96855 0.86715 1.22528 0.92398 0.96106 0.94987 1.65205 1.02450 1.44892 1.11169 1.21899 1.00290 0.96453 0.89677 1.20811 0.86453 0.87751 0.82211 1.90486 1.38482 1.57082 1.64330 1.41913 1.36552 1.32294 1.10465 1.19607 1.19057 1.12203 0.95511 0.90511 1.26006 0.97880 1.00903 0.96378 1.69662 1.33126 1.42142 1.11128 0.85009 0.78238 0.77874 0.77329 1.19802 1.19365 1.19844 1.22744 0.95793 0.94606 0.93581 1.24285 0.91446 1.01137 0.99690 0.85090 1.23233 0.99064 0.98024 0.98225 1.23617 0.97272 0.99014 0.97131 1.21441 0.98064 1.01375 0.93685 1.22510 0.97538 0.98778 0.96154 0.90577 0.89801 0.92489 0.74756 0.91875 0.91476 0.93528 0.92340 0.90905 0.87026 0.76992 0.91304 0.88662 0.91767 0.83157 0.83837 0.89389 0.92146 0.91384 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.08 8.42 71.98 0.61 -0.47 16 2 C -0.06 -0.73 0.73 -52.99 -0.04 -0.77 16 3 C 0.53 9.82 6.54 87.66 0.57 10.40 16 4 O -0.58 -16.10 15.44 -3.01 -0.05 -16.15 16 5 N -0.71 -10.06 5.40 -463.06 -2.50 -12.56 16 6 C 0.16 2.65 5.96 86.38 0.51 3.16 16 7 C -0.11 -1.77 5.60 -9.38 -0.05 -1.82 16 8 H 0.12 1.67 8.04 -2.39 -0.02 1.65 16 9 C -0.16 -3.64 6.70 -9.90 -0.07 -3.71 16 10 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 11 C 0.07 2.09 5.72 86.45 0.49 2.58 16 12 N -0.51 -16.43 4.98 -886.01 -4.41 -20.84 16 13 C 0.05 1.65 5.32 85.56 0.46 2.10 16 14 C 0.44 21.18 7.63 87.66 0.67 21.85 16 15 O -0.62 -34.92 14.80 -3.06 -0.05 -34.96 16 16 N -0.57 -29.62 5.29 -306.99 -1.62 -31.24 16 17 C -0.33 -19.13 9.68 84.04 0.81 -18.32 16 18 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 19 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 20 N -0.92 -49.50 13.05 21.66 0.28 -49.21 16 21 Si 0.99 43.15 29.55 68.60 2.03 45.17 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 25 C 0.06 1.29 6.29 86.45 0.54 1.83 16 26 C -0.15 -2.80 6.90 -8.49 -0.06 -2.86 16 27 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 28 C -0.17 -1.70 9.29 26.26 0.24 -1.46 16 29 C -0.15 -1.68 10.77 26.26 0.28 -1.40 16 30 C -0.11 -1.42 6.81 30.53 0.21 -1.21 16 31 C -0.11 -1.56 6.06 31.71 0.19 -1.37 16 32 H 0.08 0.41 7.68 -2.39 -0.02 0.39 16 33 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.42 3.51 7.89 -92.71 -0.73 2.78 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 1.24 7.95 -2.39 -0.02 1.23 16 38 H 0.05 1.34 7.75 -2.39 -0.02 1.32 16 39 H 0.06 2.29 7.23 -2.39 -0.02 2.27 16 40 H 0.07 2.16 7.77 -2.39 -0.02 2.14 16 41 H 0.11 3.32 8.08 -2.38 -0.02 3.30 16 42 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 43 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 44 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.06 1.15 8.00 -2.39 -0.02 1.13 16 46 H 0.15 0.89 8.06 -2.91 -0.02 0.86 16 47 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 48 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 50 H 0.07 1.28 6.90 -2.39 -0.02 1.26 16 51 H 0.10 0.95 7.92 -2.39 -0.02 0.93 16 Total: -1.00 -75.19 413.57 -0.99 -76.18 By element: Atomic # 1 Polarization: 35.76 SS G_CDS: -0.52 Total: 35.24 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 5.85 Total: 8.38 kcal Atomic # 7 Polarization: -105.60 SS G_CDS: -8.25 Total: -113.85 kcal Atomic # 8 Polarization: -51.02 SS G_CDS: -0.09 Total: -51.11 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -75.19 -0.99 -76.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282878698.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.044 kcal (2) G-P(sol) polarization free energy of solvation -75.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds