Wall clock time and date at job start Wed Apr 1 2020 05:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38254 * 119.99858 * 2 1 4 4 C 1.38211 * 120.00257 * 180.02562 * 3 2 1 5 5 C 1.38257 * 119.99643 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00072 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46869 * 89.99977 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.47411 * 180.02562 * 11 10 9 13 13 C 1.46898 * 110.99926 * 66.04687 * 12 11 10 14 14 C 1.46900 * 110.99813 * 190.00182 * 12 11 10 15 15 C 1.50703 * 109.46627 * 169.99699 * 14 12 11 16 16 O 1.21284 * 120.00321 * 0.02562 * 15 14 12 17 17 N 1.34786 * 119.99514 * 180.02562 * 15 14 12 18 18 C 1.37097 * 119.99388 * 180.02562 * 17 15 14 19 19 H 1.07994 * 120.00671 * 359.97438 * 18 17 15 20 20 C 1.38954 * 119.99595 * 180.02562 * 18 17 15 21 21 N 1.31410 * 119.99961 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99843 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47429 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47416 * 119.99815 * 22 20 18 25 25 H 1.48502 * 109.46881 * 239.99509 * 22 20 18 26 26 C 1.38213 * 120.00106 * 0.25731 * 5 4 3 27 27 C 1.38211 * 120.00094 * 180.02562 * 2 1 3 28 28 C 1.50705 * 119.99840 * 359.97438 * 27 2 1 29 29 H 1.08997 * 109.47318 * 90.00261 * 1 2 3 30 30 H 1.09007 * 109.47194 * 209.99866 * 1 2 3 31 31 H 1.08997 * 109.47490 * 329.99561 * 1 2 3 32 32 H 1.08002 * 120.00131 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.00461 * 179.97438 * 4 3 2 34 34 H 1.09004 * 109.47210 * 330.00271 * 6 5 4 35 35 H 1.08994 * 109.47551 * 209.99923 * 6 5 4 36 36 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 37 37 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 38 38 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 39 39 H 1.08998 * 109.47382 * 300.00439 * 11 10 9 40 40 H 1.09005 * 109.46800 * 60.00640 * 11 10 9 41 41 H 1.08999 * 109.47080 * 60.00072 * 13 12 11 42 42 H 1.08997 * 109.46676 * 180.02562 * 13 12 11 43 43 H 1.08998 * 109.47085 * 300.00111 * 13 12 11 44 44 H 1.08998 * 109.47297 * 289.99615 * 14 12 11 45 45 H 1.08997 * 109.47246 * 50.00512 * 14 12 11 46 46 H 0.96997 * 119.99855 * 359.97438 * 17 15 14 47 47 H 0.97004 * 120.00042 * 179.97438 * 21 20 18 48 48 H 1.08000 * 119.99831 * 179.72704 * 26 5 4 49 49 H 1.08998 * 109.46702 * 90.00471 * 28 27 2 50 50 H 1.09000 * 109.46903 * 210.00299 * 28 27 2 51 51 H 1.08992 * 109.47231 * 329.99903 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1974 -0.0005 5 6 4.2716 0.0001 -0.0016 6 6 5.7786 0.0001 -0.0028 7 6 6.2820 -0.0005 1.4177 8 8 5.4946 -0.0014 2.3402 9 7 7.6073 -0.0063 1.6630 10 6 8.0966 -0.0130 3.0438 11 6 9.6266 -0.0180 3.0427 12 7 10.1173 -0.0253 4.4274 13 6 9.7642 -1.2803 5.1043 14 6 11.5669 0.2080 4.4734 15 6 11.9936 0.4381 5.9003 16 8 11.1711 0.4100 6.7912 17 7 13.2892 0.6751 6.1864 18 6 13.6774 0.8839 7.4845 19 1 12.9451 0.8589 8.2779 20 6 15.0130 1.1288 7.7794 21 7 15.9040 1.1597 6.8140 22 14 15.5418 1.4140 9.5481 23 1 14.3569 1.3287 10.4390 24 1 16.5327 0.3802 9.9414 25 1 16.1564 2.7604 9.6700 26 6 3.5806 -1.1969 -0.0075 27 6 2.1981 -1.1969 -0.0005 28 6 1.4445 -2.5021 -0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6582 2.1327 0.0004 33 1 4.1204 2.1327 -0.0010 34 1 6.1416 0.8903 -0.5165 35 1 6.1416 -0.8896 -0.5172 36 1 8.2371 -0.0059 0.9253 37 1 7.7369 0.8764 3.5611 38 1 7.7304 -0.9035 3.5547 39 1 9.9867 -0.9072 2.5253 40 1 9.9924 0.8728 2.5320 41 1 10.2111 -2.1191 4.5707 42 1 10.1390 -1.2589 6.1276 43 1 8.6803 -1.3938 5.1171 44 1 12.0879 -0.6623 4.0742 45 1 11.8130 1.0850 3.8747 46 1 13.9470 0.6972 5.4738 47 1 16.8364 1.3310 7.0198 48 1 4.1207 -2.1321 -0.0128 49 1 1.2626 -2.8165 -1.0282 50 1 2.0338 -3.2618 0.5130 51 1 0.4924 -2.3719 0.5137 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317469369.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:57 Heat of formation + Delta-G solvation = -51.250065 kcal Electronic energy + Delta-G solvation = -28727.765795 eV Core-core repulsion = 24626.696645 eV Total energy + Delta-G solvation = -4101.069150 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.38375 -39.35329 -38.62702 -36.80724 -34.71631 -34.41654 -33.80633 -32.52851 -31.25988 -30.60523 -29.09152 -27.72547 -27.47096 -25.81435 -25.03904 -23.70010 -22.38197 -21.24092 -21.08592 -20.00777 -19.17302 -17.85619 -17.26540 -16.58050 -16.38049 -16.04246 -15.86707 -15.72304 -15.09664 -14.99153 -14.65883 -14.57529 -14.47596 -14.09349 -13.79384 -13.57237 -13.39888 -13.31832 -13.21137 -13.11481 -12.98406 -12.90612 -12.25161 -12.16305 -12.12951 -11.91464 -11.83152 -11.52375 -11.40120 -11.28548 -11.24032 -11.13472 -11.04732 -10.95501 -10.34004 -10.22751 -10.06713 -9.49121 -9.18990 -8.95950 -8.66821 -8.48371 -7.99226 -7.89408 -6.42185 -3.82761 1.05924 1.18145 2.48890 2.90185 3.16319 3.27123 3.34559 3.52194 3.89710 4.06485 4.27878 4.30786 4.45902 4.58684 4.67805 4.72664 4.77459 4.87989 4.93283 5.00498 5.09180 5.12550 5.15036 5.18169 5.24453 5.29419 5.34695 5.38856 5.45926 5.51886 5.57293 5.63009 5.68486 5.84169 5.86955 5.89757 5.92510 5.94233 6.01029 6.19239 6.24588 6.28238 6.32847 6.40525 6.55536 6.78889 7.18700 7.29595 7.33744 7.55436 8.06401 8.07143 8.61551 9.18169 9.54015 10.05906 10.75657 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.031847 B = 0.001353 C = 0.001346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.992104 B =20694.828890 C =20802.902533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.089 4.089 3 C -0.116 4.116 4 C -0.106 4.106 5 C -0.067 4.067 6 C -0.101 4.101 7 C 0.512 3.488 8 O -0.527 6.527 9 N -0.732 5.732 10 C 0.122 3.878 11 C 0.045 3.955 12 N -0.515 5.515 13 C 0.018 3.982 14 C 0.047 3.953 15 C 0.443 3.557 16 O -0.576 6.576 17 N -0.564 5.564 18 C -0.298 4.298 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.102 4.102 27 C -0.087 4.087 28 C -0.117 4.117 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.399 0.601 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.036 0.964 40 H 0.079 0.921 41 H 0.015 0.985 42 H 0.098 0.902 43 H 0.063 0.937 44 H 0.048 0.952 45 H 0.089 0.911 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.119 0.881 49 H 0.069 0.931 50 H 0.065 0.935 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.954 -4.582 -22.065 32.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.089 4.089 3 C -0.134 4.134 4 C -0.124 4.124 5 C -0.068 4.068 6 C -0.141 4.141 7 C 0.298 3.702 8 O -0.403 6.403 9 N -0.384 5.384 10 C -0.002 4.002 11 C -0.084 4.084 12 N -0.240 5.240 13 C -0.130 4.130 14 C -0.084 4.084 15 C 0.229 3.771 16 O -0.460 6.460 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.122 0.878 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.120 4.120 27 C -0.087 4.087 28 C -0.173 4.173 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.232 0.768 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.054 0.946 40 H 0.097 0.903 41 H 0.034 0.966 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.066 0.934 45 H 0.107 0.893 46 H 0.225 0.775 47 H 0.080 0.920 48 H 0.137 0.863 49 H 0.087 0.913 50 H 0.084 0.916 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.106 -4.187 -20.487 31.912 hybrid contribution 1.746 -0.393 -0.414 1.837 sum -22.360 -4.580 -20.902 30.949 Atomic orbital electron populations 1.20852 0.91421 1.02882 1.02166 1.19746 0.95910 0.92716 1.00549 1.20949 0.94056 0.97416 1.00946 1.20932 0.94249 0.97315 0.99924 1.19199 0.93446 0.93562 1.00554 1.20668 0.93442 1.05240 0.94786 1.20509 0.82064 0.76401 0.91276 1.90760 1.55172 1.48163 1.46163 1.45962 1.07036 1.76192 1.09248 1.21329 0.93506 1.03445 0.81911 1.22252 0.94132 1.01143 0.90875 1.61441 1.13215 1.36230 1.13074 1.22625 1.00780 0.87769 1.01780 1.21867 0.87615 1.01212 0.97708 1.19713 0.83355 0.84535 0.89521 1.90494 1.51455 1.56072 1.47957 1.41866 1.06448 1.62342 1.09462 1.19759 0.93216 1.45087 0.84693 0.87829 1.25254 0.95556 0.97406 0.99718 1.69619 1.02749 1.49794 1.32220 0.85804 0.78707 0.77807 0.82062 1.19198 1.20795 1.20759 1.20811 0.93512 0.97324 1.00318 1.19689 0.93550 0.94901 1.00572 1.20849 1.00181 0.94117 1.02166 0.91279 0.91192 0.91653 0.86119 0.86248 0.87901 0.88004 0.76751 0.90315 0.91235 0.94599 0.90293 0.96635 0.88365 0.91864 0.93357 0.89323 0.77516 0.91950 0.86333 0.91264 0.91613 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 9.60 36.01 0.35 -0.38 16 2 C -0.09 -0.79 5.88 -104.63 -0.62 -1.41 16 3 C -0.12 -1.05 9.70 -39.59 -0.38 -1.43 16 4 C -0.11 -1.01 9.70 -39.58 -0.38 -1.39 16 5 C -0.07 -0.64 4.37 -104.62 -0.46 -1.10 16 6 C -0.10 -0.74 5.83 -29.03 -0.17 -0.91 16 7 C 0.51 5.57 7.82 -10.98 -0.09 5.49 16 8 O -0.53 -8.32 16.03 5.55 0.09 -8.23 16 9 N -0.73 -6.72 5.56 -60.29 -0.33 -7.06 16 10 C 0.12 1.46 5.60 -4.04 -0.02 1.44 16 11 C 0.04 0.53 5.07 -3.82 -0.02 0.51 16 12 N -0.52 -8.44 4.50 -244.37 -1.10 -9.54 16 13 C 0.02 0.30 8.96 60.06 0.54 0.83 16 14 C 0.05 0.82 5.45 -4.97 -0.03 0.80 16 15 C 0.44 10.38 7.48 -10.98 -0.08 10.30 16 16 O -0.58 -15.49 13.91 5.55 0.08 -15.41 16 17 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 18 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 19 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.40 13.05 55.50 0.72 -23.67 16 22 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 C -0.10 -0.97 9.36 -39.58 -0.37 -1.34 16 27 C -0.09 -0.79 5.88 -104.62 -0.62 -1.41 16 28 C -0.12 -0.77 9.60 36.01 0.35 -0.42 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.39 5.95 -51.92 -0.31 0.08 16 31 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 32 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.10 0.52 8.09 -51.93 -0.42 0.10 16 35 H 0.10 0.50 8.08 -51.93 -0.42 0.08 16 36 H 0.40 2.32 8.47 -40.82 -0.35 1.98 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 0.92 6.55 -51.93 -0.34 0.58 16 39 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 40 H 0.08 0.83 7.93 -51.93 -0.41 0.42 16 41 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.10 1.95 5.82 -51.93 -0.30 1.65 16 43 H 0.06 0.94 6.47 -51.93 -0.34 0.60 16 44 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 45 H 0.09 1.37 7.93 -51.93 -0.41 0.96 16 46 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 47 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 48 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 49 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 51 H 0.07 0.40 5.95 -51.93 -0.31 0.09 16 LS Contribution 418.47 15.07 6.31 6.31 Total: -1.00 -35.01 418.47 -9.64 -44.66 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -8.08 Total: 9.52 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -2.24 Total: 1.66 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.77 Total: -54.50 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: 0.17 Total: -23.64 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -35.01 -9.64 -44.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317469369.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.591 kcal (2) G-P(sol) polarization free energy of solvation -35.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds