Wall clock time and date at job start Wed Apr 1 2020 05:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38254 * 119.99858 * 2 1 4 4 C 1.38211 * 120.00257 * 180.02562 * 3 2 1 5 5 C 1.38257 * 119.99643 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00072 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46869 * 89.99977 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.47411 * 180.02562 * 11 10 9 13 13 C 1.46898 * 110.99926 * 66.04687 * 12 11 10 14 14 C 1.46900 * 110.99813 * 190.00182 * 12 11 10 15 15 C 1.50703 * 109.46627 * 169.99699 * 14 12 11 16 16 O 1.21284 * 120.00321 * 0.02562 * 15 14 12 17 17 N 1.34786 * 119.99514 * 180.02562 * 15 14 12 18 18 C 1.37097 * 119.99388 * 180.02562 * 17 15 14 19 19 H 1.07994 * 120.00671 * 359.97438 * 18 17 15 20 20 C 1.38954 * 119.99595 * 180.02562 * 18 17 15 21 21 N 1.31410 * 119.99961 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99843 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47429 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47416 * 119.99815 * 22 20 18 25 25 H 1.48502 * 109.46881 * 239.99509 * 22 20 18 26 26 C 1.38213 * 120.00106 * 0.25731 * 5 4 3 27 27 C 1.38211 * 120.00094 * 180.02562 * 2 1 3 28 28 C 1.50705 * 119.99840 * 359.97438 * 27 2 1 29 29 H 1.08997 * 109.47318 * 90.00261 * 1 2 3 30 30 H 1.09007 * 109.47194 * 209.99866 * 1 2 3 31 31 H 1.08997 * 109.47490 * 329.99561 * 1 2 3 32 32 H 1.08002 * 120.00131 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.00461 * 179.97438 * 4 3 2 34 34 H 1.09004 * 109.47210 * 330.00271 * 6 5 4 35 35 H 1.08994 * 109.47551 * 209.99923 * 6 5 4 36 36 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 37 37 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 38 38 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 39 39 H 1.08998 * 109.47382 * 300.00439 * 11 10 9 40 40 H 1.09005 * 109.46800 * 60.00640 * 11 10 9 41 41 H 1.08999 * 109.47080 * 60.00072 * 13 12 11 42 42 H 1.08997 * 109.46676 * 180.02562 * 13 12 11 43 43 H 1.08998 * 109.47085 * 300.00111 * 13 12 11 44 44 H 1.08998 * 109.47297 * 289.99615 * 14 12 11 45 45 H 1.08997 * 109.47246 * 50.00512 * 14 12 11 46 46 H 0.96997 * 119.99855 * 359.97438 * 17 15 14 47 47 H 0.97004 * 120.00042 * 179.97438 * 21 20 18 48 48 H 1.08000 * 119.99831 * 179.72704 * 26 5 4 49 49 H 1.08998 * 109.46702 * 90.00471 * 28 27 2 50 50 H 1.09000 * 109.46903 * 210.00299 * 28 27 2 51 51 H 1.08992 * 109.47231 * 329.99903 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1974 -0.0005 5 6 4.2716 0.0001 -0.0016 6 6 5.7786 0.0001 -0.0028 7 6 6.2820 -0.0005 1.4177 8 8 5.4946 -0.0014 2.3402 9 7 7.6073 -0.0063 1.6630 10 6 8.0966 -0.0130 3.0438 11 6 9.6266 -0.0180 3.0427 12 7 10.1173 -0.0253 4.4274 13 6 9.7642 -1.2803 5.1043 14 6 11.5669 0.2080 4.4734 15 6 11.9936 0.4381 5.9003 16 8 11.1711 0.4100 6.7912 17 7 13.2892 0.6751 6.1864 18 6 13.6774 0.8839 7.4845 19 1 12.9451 0.8589 8.2779 20 6 15.0130 1.1288 7.7794 21 7 15.9040 1.1597 6.8140 22 14 15.5418 1.4140 9.5481 23 1 14.3569 1.3287 10.4390 24 1 16.5327 0.3802 9.9414 25 1 16.1564 2.7604 9.6700 26 6 3.5806 -1.1969 -0.0075 27 6 2.1981 -1.1969 -0.0005 28 6 1.4445 -2.5021 -0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6582 2.1327 0.0004 33 1 4.1204 2.1327 -0.0010 34 1 6.1416 0.8903 -0.5165 35 1 6.1416 -0.8896 -0.5172 36 1 8.2371 -0.0059 0.9253 37 1 7.7369 0.8764 3.5611 38 1 7.7304 -0.9035 3.5547 39 1 9.9867 -0.9072 2.5253 40 1 9.9924 0.8728 2.5320 41 1 10.2111 -2.1191 4.5707 42 1 10.1390 -1.2589 6.1276 43 1 8.6803 -1.3938 5.1171 44 1 12.0879 -0.6623 4.0742 45 1 11.8130 1.0850 3.8747 46 1 13.9470 0.6972 5.4738 47 1 16.8364 1.3310 7.0198 48 1 4.1207 -2.1321 -0.0128 49 1 1.2626 -2.8165 -1.0282 50 1 2.0338 -3.2618 0.5130 51 1 0.4924 -2.3719 0.5137 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317469369.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:56 Heat of formation + Delta-G solvation = -76.075489 kcal Electronic energy + Delta-G solvation = -28728.842306 eV Core-core repulsion = 24626.696645 eV Total energy + Delta-G solvation = -4102.145661 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.13980 -40.41512 -40.01041 -38.17194 -36.01583 -35.48024 -35.09753 -33.27095 -33.12927 -31.42480 -30.05200 -29.02956 -28.07918 -27.05978 -26.24417 -25.00186 -23.01568 -22.33869 -21.90134 -20.97619 -20.70162 -19.84855 -18.17240 -17.62549 -17.45113 -17.10638 -16.71126 -16.67144 -16.55161 -16.16564 -15.97167 -15.62707 -15.46492 -15.21774 -15.03542 -14.97201 -14.47943 -14.38382 -14.00666 -13.78773 -13.64489 -13.58809 -13.57529 -13.45011 -13.04000 -12.93281 -12.80028 -12.67485 -12.55666 -12.55378 -12.50541 -12.38963 -12.14361 -12.08329 -11.82974 -11.71159 -11.45974 -10.99354 -10.28656 -10.09534 -9.98413 -9.61352 -9.29823 -9.23764 -8.45849 -5.93875 0.40760 0.52002 1.36691 1.42198 1.55974 1.66809 2.05270 2.07272 2.31201 2.79792 3.00619 3.21408 3.43540 3.69132 3.84175 3.88586 4.01521 4.05901 4.12703 4.14448 4.26092 4.27392 4.36672 4.42736 4.47128 4.53427 4.55660 4.63205 4.63983 4.64387 4.72236 4.74732 4.86094 4.87736 4.88943 4.96240 5.04038 5.04707 5.20468 5.28324 5.39021 5.41457 5.42786 5.55772 5.67739 5.78006 5.85787 6.05239 6.17346 6.17867 6.59000 6.62737 7.15009 7.30341 7.58507 8.15116 8.71723 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.031847 B = 0.001353 C = 0.001346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.992104 B =20694.828890 C =20802.902533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.104 4.104 3 C -0.131 4.131 4 C -0.124 4.124 5 C -0.083 4.083 6 C -0.092 4.092 7 C 0.510 3.490 8 O -0.584 6.584 9 N -0.714 5.714 10 C 0.130 3.870 11 C 0.053 3.947 12 N -0.541 5.541 13 C 0.025 3.975 14 C 0.061 3.939 15 C 0.439 3.561 16 O -0.617 6.617 17 N -0.574 5.574 18 C -0.332 4.332 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.920 5.920 22 Si 0.990 3.010 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.271 1.271 26 C -0.119 4.119 27 C -0.103 4.103 28 C -0.115 4.115 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.134 0.866 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.419 0.581 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.100 0.900 41 H 0.036 0.964 42 H 0.055 0.945 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.115 0.885 46 H 0.397 0.603 47 H 0.277 0.723 48 H 0.127 0.873 49 H 0.082 0.918 50 H 0.065 0.935 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.547 -4.861 -24.360 33.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.104 4.104 3 C -0.148 4.148 4 C -0.142 4.142 5 C -0.083 4.083 6 C -0.131 4.131 7 C 0.298 3.702 8 O -0.463 6.463 9 N -0.368 5.368 10 C 0.005 3.995 11 C -0.074 4.074 12 N -0.266 5.266 13 C -0.123 4.123 14 C -0.070 4.070 15 C 0.226 3.774 16 O -0.503 6.503 17 N -0.211 5.211 18 C -0.462 4.462 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.561 5.561 22 Si 0.814 3.186 23 H -0.200 1.200 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.137 4.137 27 C -0.103 4.103 28 C -0.171 4.171 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.257 0.743 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.118 0.882 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.133 0.867 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.145 0.855 49 H 0.100 0.900 50 H 0.084 0.916 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -23.661 -4.470 -22.853 33.197 hybrid contribution 1.543 -0.310 0.272 1.597 sum -22.118 -4.780 -22.581 31.968 Atomic orbital electron populations 1.20886 0.89774 1.03393 1.03071 1.20111 0.97345 0.92669 1.00253 1.21245 0.94341 0.98262 1.00991 1.21201 0.94753 0.97928 1.00354 1.19500 0.94799 0.93536 1.00487 1.20713 0.92030 1.07936 0.92447 1.21176 0.81894 0.74935 0.92219 1.90743 1.56605 1.50818 1.48132 1.45762 1.07114 1.75190 1.08759 1.21044 0.93849 1.01404 0.83155 1.22252 0.93368 1.03364 0.88449 1.61324 1.12626 1.36482 1.16169 1.22451 1.01259 0.88800 0.99777 1.21734 0.88557 1.03411 0.93284 1.20858 0.82283 0.82306 0.91935 1.90476 1.52409 1.57205 1.50194 1.41919 1.07369 1.63111 1.08743 1.19676 0.93500 1.47420 0.85565 0.90521 1.25978 0.95043 0.96530 1.03532 1.69668 1.03137 1.49579 1.33693 0.84907 0.78021 0.78290 0.77340 1.20010 1.19583 1.19635 1.21088 0.94066 0.97874 1.00713 1.20066 0.93880 0.96029 1.00308 1.20880 1.00179 0.92969 1.03091 0.90083 0.90566 0.91260 0.84855 0.85379 0.85144 0.85120 0.74302 0.93101 0.92810 0.91931 0.88214 0.94562 0.92586 0.91073 0.90863 0.86659 0.76929 0.91336 0.85468 0.89964 0.91631 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 9.60 71.24 0.68 -0.64 16 2 C -0.10 -1.80 5.88 -19.87 -0.12 -1.92 16 3 C -0.13 -2.34 9.70 22.27 0.22 -2.13 16 4 C -0.12 -2.32 9.70 22.27 0.22 -2.10 16 5 C -0.08 -1.51 4.37 -19.87 -0.09 -1.59 16 6 C -0.09 -1.13 5.83 29.10 0.17 -0.96 16 7 C 0.51 10.44 7.82 87.66 0.69 11.12 16 8 O -0.58 -18.63 16.03 -3.04 -0.05 -18.68 16 9 N -0.71 -11.50 5.56 -463.06 -2.57 -14.08 16 10 C 0.13 2.97 5.60 86.38 0.48 3.45 16 11 C 0.05 1.10 5.07 86.30 0.44 1.54 16 12 N -0.54 -16.92 4.50 -927.06 -4.17 -21.10 16 13 C 0.03 0.81 8.96 127.69 1.14 1.95 16 14 C 0.06 2.01 5.45 85.56 0.47 2.47 16 15 C 0.44 20.71 7.48 87.66 0.66 21.37 16 16 O -0.62 -34.32 13.91 -3.04 -0.04 -34.36 16 17 N -0.57 -29.16 5.29 -306.98 -1.62 -30.78 16 18 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 19 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 20 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 21 N -0.92 -49.21 13.05 21.66 0.28 -48.92 16 22 Si 0.99 43.07 29.55 68.60 2.03 45.10 16 23 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 C -0.12 -2.21 9.36 22.27 0.21 -2.00 16 27 C -0.10 -1.82 5.88 -19.86 -0.12 -1.94 16 28 C -0.11 -1.40 9.60 71.24 0.68 -0.72 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.76 5.95 -2.38 -0.01 0.75 16 31 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16 32 H 0.13 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 34 H 0.13 0.88 8.09 -2.38 -0.02 0.86 16 35 H 0.13 0.85 8.08 -2.39 -0.02 0.83 16 36 H 0.42 3.30 8.47 -92.71 -0.79 2.52 16 37 H 0.05 1.45 8.14 -2.39 -0.02 1.44 16 38 H 0.05 1.41 6.55 -2.39 -0.02 1.39 16 39 H 0.06 1.02 8.12 -2.39 -0.02 1.00 16 40 H 0.10 1.68 7.93 -2.38 -0.02 1.67 16 41 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.06 2.30 5.82 -2.39 -0.01 2.28 16 43 H 0.07 2.13 6.47 -2.39 -0.02 2.11 16 44 H 0.07 2.08 8.12 -2.39 -0.02 2.06 16 45 H 0.12 3.20 7.93 -2.39 -0.02 3.18 16 46 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16 47 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 48 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 49 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.06 0.78 8.09 -2.39 -0.02 0.77 16 51 H 0.08 0.81 5.95 -2.39 -0.01 0.79 16 Total: -1.00 -79.49 418.47 0.30 -79.20 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: -0.56 Total: 33.89 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 7.01 Total: 9.74 kcal Atomic # 7 Polarization: -106.79 SS G_CDS: -8.08 Total: -114.87 kcal Atomic # 8 Polarization: -52.96 SS G_CDS: -0.09 Total: -53.05 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -79.49 0.30 -79.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317469369.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.120 kcal (2) G-P(sol) polarization free energy of solvation -79.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds