Wall clock time and date at job start Wed Apr 1 2020 04:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86794 * 120.00104 * 2 1 4 4 H 1.48507 * 109.47237 * 239.99725 * 3 2 1 5 5 H 1.48499 * 109.47622 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47299 * 120.00231 * 3 2 1 7 7 C 1.38818 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99596 * 163.07788 * 7 2 1 9 9 N 1.36939 * 119.99887 * 343.07982 * 7 2 1 10 10 C 1.46928 * 120.63043 * 331.84545 * 9 7 2 11 11 C 1.53190 * 108.77218 * 233.58524 * 10 9 7 12 12 C 1.53037 * 109.31451 * 305.36422 * 11 10 9 13 13 C 1.53002 * 109.45970 * 181.38618 * 12 11 10 14 14 C 1.52998 * 109.47050 * 174.97436 * 13 12 11 15 15 N 1.46506 * 109.47083 * 180.02562 * 14 13 12 16 16 C 1.34776 * 120.00145 * 180.02562 * 15 14 13 17 17 O 1.21619 * 119.99644 * 359.97438 * 16 15 14 18 18 C 1.47416 * 119.99846 * 180.27601 * 16 15 14 19 19 C 1.36093 * 126.44407 * 179.74985 * 18 16 15 20 20 O 1.34255 * 106.94780 * 180.02562 * 19 18 16 21 21 C 1.34057 * 108.22698 * 359.97438 * 20 19 18 22 22 C 1.50696 * 125.37813 * 179.97438 * 21 20 19 23 23 C 1.53003 * 109.46943 * 270.02697 * 22 21 20 24 24 C 1.53001 * 117.49513 * 243.74483 * 23 22 21 25 25 C 1.53002 * 117.49707 * 175.09044 * 23 22 21 26 26 N 1.29934 * 109.23914 * 359.72603 * 21 20 19 27 27 C 1.53045 * 109.52602 * 61.37478 * 12 11 10 28 28 C 1.46920 * 120.62848 * 151.81883 * 9 7 2 29 29 H 0.97008 * 119.99583 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.58270 * 113.79884 * 10 9 7 31 31 H 1.08999 * 109.70310 * 353.44280 * 10 9 7 32 32 H 1.08998 * 109.49489 * 185.41268 * 11 10 9 33 33 H 1.09004 * 109.52399 * 65.33557 * 11 10 9 34 34 H 1.08994 * 109.45910 * 301.36020 * 12 11 10 35 35 H 1.09000 * 109.47090 * 54.97341 * 13 12 11 36 36 H 1.09006 * 109.47246 * 294.97542 * 13 12 11 37 37 H 1.09000 * 109.47252 * 60.00004 * 14 13 12 38 38 H 1.09002 * 109.46981 * 299.99667 * 14 13 12 39 39 H 0.96998 * 119.99739 * 0.02562 * 15 14 13 40 40 H 1.08001 * 126.52637 * 0.02878 * 19 18 16 41 41 H 1.09003 * 109.47473 * 30.01871 * 22 21 20 42 42 H 1.08996 * 109.47106 * 150.02548 * 22 21 20 43 43 H 1.08997 * 115.55430 * 29.41397 * 23 22 21 44 44 H 1.08998 * 117.50236 * 0.02562 * 24 23 22 45 45 H 1.09002 * 117.49481 * 145.02079 * 24 23 22 46 46 H 1.08999 * 117.49513 * 214.97643 * 25 23 22 47 47 H 1.08999 * 117.50287 * 359.97438 * 25 23 22 48 48 H 1.09000 * 109.49505 * 58.57616 * 27 12 11 49 49 H 1.08993 * 109.49292 * 178.67638 * 27 12 11 50 50 H 1.08998 * 109.59279 * 246.19893 * 28 9 7 51 51 H 1.09005 * 109.58806 * 6.48594 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2728 9 7 1.3699 -2.3626 0.3441 10 6 0.2258 -2.3410 1.2657 11 6 0.4971 -3.3212 2.4113 12 6 0.8116 -4.7023 1.8321 13 6 1.0491 -5.6921 2.9743 14 6 1.2395 -7.0974 2.4001 15 7 1.4664 -8.0453 3.4940 16 6 1.6614 -9.3513 3.2244 17 8 1.6486 -9.7430 2.0730 18 6 1.8836 -10.3060 4.3254 19 6 2.0885 -11.6460 4.2046 20 8 2.2447 -12.1316 5.4465 21 6 2.1389 -11.1128 6.3114 22 6 2.2520 -11.2252 7.8099 23 6 0.8683 -11.4884 8.4074 24 6 0.2860 -10.4221 9.3374 25 6 0.7869 -11.7490 9.9129 26 7 1.9287 -10.0124 5.6532 27 6 2.0672 -4.6179 0.9611 28 6 1.8136 -3.6527 -0.2012 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6772 -2.6411 0.7341 31 1 0.0965 -1.3361 1.6675 32 1 -0.3835 -3.3866 3.0503 33 1 1.3466 -2.9704 2.9974 34 1 -0.0285 -5.0418 1.2262 35 1 0.1894 -5.6868 3.6444 36 1 1.9425 -5.4014 3.5272 37 1 2.0992 -7.1027 1.7301 38 1 0.3462 -7.3881 1.8474 39 1 1.4762 -7.7329 4.4122 40 1 2.1194 -12.2112 3.2848 41 1 2.9197 -12.0487 8.0632 42 1 2.6518 -10.2956 8.2148 43 1 0.1737 -12.0293 7.7647 44 1 0.8884 -9.5329 9.5231 45 1 -0.7917 -10.2618 9.3066 46 1 0.0385 -12.4612 10.2606 47 1 1.7191 -11.7334 10.4776 48 1 2.9019 -4.2546 1.5606 49 1 2.3042 -5.6064 0.5679 50 1 1.0400 -4.0598 -0.8523 51 1 2.7331 -3.5124 -0.7696 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319040000.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:49 Heat of formation + Delta-G solvation = 12.606176 kcal Electronic energy + Delta-G solvation = -29364.035745 eV Core-core repulsion = 25265.735609 eV Total energy + Delta-G solvation = -4098.300135 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.83564 -39.68279 -38.14362 -37.95247 -35.43843 -35.23527 -33.49118 -32.29329 -31.21728 -29.94414 -28.76204 -28.24462 -25.57283 -24.11617 -22.94002 -22.88892 -22.36605 -21.88890 -21.18185 -20.87369 -20.34807 -19.04423 -18.40208 -17.21654 -16.88157 -16.74854 -16.31194 -15.92998 -15.52806 -14.84012 -14.80969 -14.79224 -14.20536 -14.03035 -13.96145 -13.67723 -13.45027 -13.37525 -13.30440 -12.78634 -12.54644 -12.34164 -12.18681 -12.03189 -11.63697 -11.54378 -11.29989 -11.21867 -11.16938 -10.96013 -10.85198 -10.66845 -10.60377 -10.49698 -10.33853 -10.13278 -10.10960 -9.81706 -9.46922 -9.40963 -9.34096 -9.07744 -8.41514 -6.60086 -5.73830 -3.15829 0.74467 1.61654 2.12338 2.90693 3.07449 3.22690 3.41085 3.41656 3.46551 3.48078 4.13374 4.30632 4.31518 4.47857 4.48149 4.53899 4.70413 4.92165 4.97048 5.00986 5.09466 5.14460 5.17097 5.27088 5.33924 5.39936 5.43185 5.50552 5.57978 5.60802 5.64330 5.66614 5.78965 5.83876 6.06384 6.08333 6.17138 6.26641 6.36289 6.43321 6.61029 6.69799 6.76786 6.88851 6.92321 7.02687 7.07907 7.39552 7.44164 7.71986 7.84003 7.98492 8.50926 9.27195 9.91080 10.48432 11.34595 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017950 B = 0.001654 C = 0.001561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.473580 B =16927.379831 C =17927.839735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.251 4.251 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.171 3.829 11 C -0.134 4.134 12 C -0.074 4.074 13 C -0.125 4.125 14 C 0.116 3.884 15 N -0.709 5.709 16 C 0.598 3.402 17 O -0.538 6.538 18 C -0.070 4.070 19 C 0.012 3.988 20 O -0.196 6.196 21 C 0.202 3.798 22 C 0.007 3.993 23 C -0.158 4.158 24 C -0.172 4.172 25 C -0.173 4.173 26 N -0.455 5.455 27 C -0.130 4.130 28 C 0.145 3.855 29 H 0.253 0.747 30 H 0.016 0.984 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.408 0.592 40 H 0.232 0.768 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.099 0.901 48 H 0.057 0.943 49 H 0.051 0.949 50 H 0.016 0.984 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.328 -26.423 19.156 32.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.045 3.955 11 C -0.173 4.173 12 C -0.093 4.093 13 C -0.163 4.163 14 C -0.007 4.007 15 N -0.359 5.359 16 C 0.383 3.617 17 O -0.415 6.415 18 C -0.190 4.190 19 C -0.062 4.062 20 O -0.082 6.082 21 C -0.008 4.008 22 C -0.030 4.030 23 C -0.177 4.177 24 C -0.209 4.209 25 C -0.210 4.210 26 N -0.185 5.185 27 C -0.169 4.169 28 C 0.018 3.982 29 H 0.063 0.937 30 H 0.034 0.966 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.244 0.756 40 H 0.248 0.752 41 H 0.119 0.881 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.119 0.881 45 H 0.115 0.885 46 H 0.116 0.884 47 H 0.117 0.883 48 H 0.076 0.924 49 H 0.069 0.931 50 H 0.034 0.966 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.141 -25.923 18.572 31.961 hybrid contribution 0.424 0.353 -0.012 0.552 sum 2.565 -25.570 18.559 31.700 Atomic orbital electron populations 1.70028 1.05242 1.25491 1.54088 1.25039 0.95279 0.98353 1.01073 0.86378 0.78902 0.83441 0.78095 1.20923 1.21674 1.21102 1.19155 0.92500 0.84910 1.41507 0.91845 1.44042 1.35893 1.01528 1.50070 1.20757 0.88600 0.98104 0.88041 1.22220 0.99921 0.95358 0.99839 1.20971 0.98489 0.94822 0.95066 1.21912 1.02147 0.92912 0.99336 1.21629 1.02215 0.87849 0.88961 1.45900 1.71421 1.06955 1.11660 1.16741 0.76932 0.81813 0.86183 1.90844 1.52012 1.78514 1.20133 1.21856 1.11443 0.94075 0.91670 1.25318 0.99902 0.94397 0.86570 1.84399 1.68283 1.39503 1.15976 1.26134 0.99900 0.79736 0.94980 1.19723 0.97304 1.05232 0.80778 1.22148 0.97129 1.05133 0.93288 1.23114 1.01726 0.93197 1.02829 1.23034 1.03556 1.00012 0.94407 1.70764 1.17122 1.27826 1.02766 1.22125 0.97106 0.98894 0.98796 1.20899 0.97473 0.86970 0.92845 0.93661 0.96571 0.89619 0.93447 0.92752 0.91658 0.91669 0.91474 0.90686 0.91226 0.75637 0.75229 0.88147 0.87146 0.87474 0.88125 0.88515 0.88416 0.88306 0.92419 0.93076 0.96590 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.56 11.19 55.49 0.62 -25.94 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 3 Si 0.90 21.95 29.59 -169.99 -5.03 16.92 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.25 -7.01 9.58 -15.06 -0.14 -7.15 16 8 H 0.06 1.74 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -15.09 2.99 -172.32 -0.52 -15.60 16 10 C 0.17 4.11 5.30 -3.71 -0.02 4.09 16 11 C -0.13 -2.52 5.36 -26.61 -0.14 -2.67 16 12 C -0.07 -1.21 2.15 -90.58 -0.19 -1.40 16 13 C -0.13 -1.61 4.80 -26.73 -0.13 -1.74 16 14 C 0.12 1.49 5.43 -4.04 -0.02 1.47 16 15 N -0.71 -8.55 5.55 -61.38 -0.34 -8.89 16 16 C 0.60 7.92 7.81 -12.52 -0.10 7.82 16 17 O -0.54 -8.55 16.89 5.26 0.09 -8.46 16 18 C -0.07 -0.79 6.99 -83.03 -0.58 -1.37 16 19 C 0.01 0.11 11.95 29.96 0.36 0.46 16 20 O -0.20 -1.65 10.73 6.50 0.07 -1.58 16 21 C 0.20 1.67 7.51 -13.08 -0.10 1.57 16 22 C 0.01 0.04 6.12 -27.88 -0.17 -0.13 16 23 C -0.16 -0.78 5.72 -90.62 -0.52 -1.29 16 24 C -0.17 -0.82 10.18 -26.69 -0.27 -1.09 16 25 C -0.17 -0.64 10.25 -26.69 -0.27 -0.91 16 26 N -0.45 -4.74 11.06 -7.66 -0.08 -4.82 16 27 C -0.13 -2.27 5.15 -26.61 -0.14 -2.40 16 28 C 0.14 3.10 6.52 -3.71 -0.02 3.08 16 29 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 2.31 6.07 -51.93 -0.31 1.99 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.03 6.54 -51.93 -0.34 0.69 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.41 4.35 8.20 -40.82 -0.33 4.01 16 40 H 0.23 1.39 8.06 -52.49 -0.42 0.96 16 41 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.11 0.45 7.88 -51.93 -0.41 0.04 16 43 H 0.11 0.61 8.07 -51.93 -0.42 0.19 16 44 H 0.10 0.45 8.03 -51.93 -0.42 0.03 16 45 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 49 H 0.05 0.79 6.50 -51.93 -0.34 0.45 16 50 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 LS Contribution 414.38 15.07 6.24 6.24 Total: -1.00 -33.06 414.38 -9.95 -43.01 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -8.45 Total: 0.87 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -2.55 Total: -1.74 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.32 Total: -55.26 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.16 Total: -10.04 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.06 -9.95 -43.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319040000.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.612 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds