Wall clock time and date at job start Wed Apr 1 2020 04:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86794 * 120.00104 * 2 1 4 4 H 1.48507 * 109.47237 * 239.99725 * 3 2 1 5 5 H 1.48499 * 109.47622 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47299 * 120.00231 * 3 2 1 7 7 C 1.38818 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99596 * 163.07788 * 7 2 1 9 9 N 1.36939 * 119.99887 * 343.07982 * 7 2 1 10 10 C 1.46928 * 120.63043 * 331.84545 * 9 7 2 11 11 C 1.53190 * 108.77218 * 233.58524 * 10 9 7 12 12 C 1.53037 * 109.31451 * 305.36422 * 11 10 9 13 13 C 1.53002 * 109.45970 * 181.38618 * 12 11 10 14 14 C 1.52998 * 109.47050 * 174.97436 * 13 12 11 15 15 N 1.46506 * 109.47083 * 180.02562 * 14 13 12 16 16 C 1.34776 * 120.00145 * 180.02562 * 15 14 13 17 17 O 1.21619 * 119.99644 * 359.97438 * 16 15 14 18 18 C 1.47416 * 119.99846 * 180.27601 * 16 15 14 19 19 C 1.36093 * 126.44407 * 179.74985 * 18 16 15 20 20 O 1.34255 * 106.94780 * 180.02562 * 19 18 16 21 21 C 1.34057 * 108.22698 * 359.97438 * 20 19 18 22 22 C 1.50696 * 125.37813 * 179.97438 * 21 20 19 23 23 C 1.53003 * 109.46943 * 270.02697 * 22 21 20 24 24 C 1.53001 * 117.49513 * 243.74483 * 23 22 21 25 25 C 1.53002 * 117.49707 * 175.09044 * 23 22 21 26 26 N 1.29934 * 109.23914 * 359.72603 * 21 20 19 27 27 C 1.53045 * 109.52602 * 61.37478 * 12 11 10 28 28 C 1.46920 * 120.62848 * 151.81883 * 9 7 2 29 29 H 0.97008 * 119.99583 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.58270 * 113.79884 * 10 9 7 31 31 H 1.08999 * 109.70310 * 353.44280 * 10 9 7 32 32 H 1.08998 * 109.49489 * 185.41268 * 11 10 9 33 33 H 1.09004 * 109.52399 * 65.33557 * 11 10 9 34 34 H 1.08994 * 109.45910 * 301.36020 * 12 11 10 35 35 H 1.09000 * 109.47090 * 54.97341 * 13 12 11 36 36 H 1.09006 * 109.47246 * 294.97542 * 13 12 11 37 37 H 1.09000 * 109.47252 * 60.00004 * 14 13 12 38 38 H 1.09002 * 109.46981 * 299.99667 * 14 13 12 39 39 H 0.96998 * 119.99739 * 0.02562 * 15 14 13 40 40 H 1.08001 * 126.52637 * 0.02878 * 19 18 16 41 41 H 1.09003 * 109.47473 * 30.01871 * 22 21 20 42 42 H 1.08996 * 109.47106 * 150.02548 * 22 21 20 43 43 H 1.08997 * 115.55430 * 29.41397 * 23 22 21 44 44 H 1.08998 * 117.50236 * 0.02562 * 24 23 22 45 45 H 1.09002 * 117.49481 * 145.02079 * 24 23 22 46 46 H 1.08999 * 117.49513 * 214.97643 * 25 23 22 47 47 H 1.08999 * 117.50287 * 359.97438 * 25 23 22 48 48 H 1.09000 * 109.49505 * 58.57616 * 27 12 11 49 49 H 1.08993 * 109.49292 * 178.67638 * 27 12 11 50 50 H 1.08998 * 109.59279 * 246.19893 * 28 9 7 51 51 H 1.09005 * 109.58806 * 6.48594 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2728 9 7 1.3699 -2.3626 0.3441 10 6 0.2258 -2.3410 1.2657 11 6 0.4971 -3.3212 2.4113 12 6 0.8116 -4.7023 1.8321 13 6 1.0491 -5.6921 2.9743 14 6 1.2395 -7.0974 2.4001 15 7 1.4664 -8.0453 3.4940 16 6 1.6614 -9.3513 3.2244 17 8 1.6486 -9.7430 2.0730 18 6 1.8836 -10.3060 4.3254 19 6 2.0885 -11.6460 4.2046 20 8 2.2447 -12.1316 5.4465 21 6 2.1389 -11.1128 6.3114 22 6 2.2520 -11.2252 7.8099 23 6 0.8683 -11.4884 8.4074 24 6 0.2860 -10.4221 9.3374 25 6 0.7869 -11.7490 9.9129 26 7 1.9287 -10.0124 5.6532 27 6 2.0672 -4.6179 0.9611 28 6 1.8136 -3.6527 -0.2012 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6772 -2.6411 0.7341 31 1 0.0965 -1.3361 1.6675 32 1 -0.3835 -3.3866 3.0503 33 1 1.3466 -2.9704 2.9974 34 1 -0.0285 -5.0418 1.2262 35 1 0.1894 -5.6868 3.6444 36 1 1.9425 -5.4014 3.5272 37 1 2.0992 -7.1027 1.7301 38 1 0.3462 -7.3881 1.8474 39 1 1.4762 -7.7329 4.4122 40 1 2.1194 -12.2112 3.2848 41 1 2.9197 -12.0487 8.0632 42 1 2.6518 -10.2956 8.2148 43 1 0.1737 -12.0293 7.7647 44 1 0.8884 -9.5329 9.5231 45 1 -0.7917 -10.2618 9.3066 46 1 0.0385 -12.4612 10.2606 47 1 1.7191 -11.7334 10.4776 48 1 2.9019 -4.2546 1.5606 49 1 2.3042 -5.6064 0.5679 50 1 1.0400 -4.0598 -0.8523 51 1 2.7331 -3.5124 -0.7696 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319040000.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:48 Heat of formation + Delta-G solvation = -9.085805 kcal Electronic energy + Delta-G solvation = -29364.976380 eV Core-core repulsion = 25265.735609 eV Total energy + Delta-G solvation = -4099.240770 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.51141 -40.71014 -39.49880 -38.47566 -36.76380 -35.98110 -35.04944 -33.10470 -32.77768 -31.59295 -30.14405 -28.94082 -27.10945 -25.41749 -24.26174 -23.51276 -23.21480 -22.89880 -22.17305 -21.83867 -21.22786 -20.62047 -19.21597 -18.69484 -17.88492 -17.59009 -17.09639 -16.82970 -16.65726 -16.55428 -15.74872 -15.50258 -15.36453 -15.28689 -15.14262 -14.87122 -14.70903 -14.54456 -14.34911 -14.00718 -13.84721 -13.74737 -13.04351 -12.92792 -12.84625 -12.77034 -12.52996 -12.35688 -12.31137 -12.26597 -12.15930 -11.94800 -11.94324 -11.80472 -11.61431 -11.39416 -11.28177 -11.00681 -10.99153 -10.89231 -10.51848 -10.28276 -9.98292 -8.65696 -7.86387 -5.31932 0.02098 0.88703 1.46308 1.48540 1.51400 1.55642 2.01737 2.16588 2.51770 2.75222 2.92551 3.27459 3.61506 3.73278 3.74918 3.80439 3.82009 3.92167 4.02162 4.10829 4.12839 4.26650 4.29218 4.41724 4.44371 4.56949 4.59281 4.64132 4.69429 4.74334 4.75144 4.76995 4.87276 4.89454 4.98649 5.03344 5.04190 5.10198 5.11127 5.26695 5.27470 5.31478 5.32859 5.36816 5.40635 5.46709 5.56895 5.67567 5.81473 6.24849 6.40393 6.54621 7.02706 7.16362 7.88578 8.40308 9.19512 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017950 B = 0.001654 C = 0.001561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.473580 B =16927.379831 C =17927.839735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.968 3.032 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.265 4.265 8 H 0.064 0.936 9 N -0.611 5.611 10 C 0.175 3.825 11 C -0.121 4.121 12 C -0.069 4.069 13 C -0.109 4.109 14 C 0.122 3.878 15 N -0.702 5.702 16 C 0.597 3.403 17 O -0.571 6.571 18 C -0.101 4.101 19 C 0.027 3.973 20 O -0.194 6.194 21 C 0.207 3.793 22 C 0.010 3.990 23 C -0.165 4.165 24 C -0.184 4.184 25 C -0.159 4.159 26 N -0.476 5.476 27 C -0.118 4.118 28 C 0.138 3.862 29 H 0.250 0.750 30 H -0.007 1.007 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.416 0.584 40 H 0.255 0.745 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.096 0.904 44 H 0.103 0.897 45 H 0.090 0.910 46 H 0.101 0.899 47 H 0.113 0.887 48 H 0.055 0.945 49 H 0.076 0.924 50 H 0.010 0.990 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.548 -28.167 21.231 35.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.796 3.204 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.395 4.395 8 H 0.082 0.918 9 N -0.335 5.335 10 C 0.049 3.951 11 C -0.160 4.160 12 C -0.088 4.088 13 C -0.146 4.146 14 C -0.001 4.001 15 N -0.352 5.352 16 C 0.384 3.616 17 O -0.452 6.452 18 C -0.220 4.220 19 C -0.047 4.047 20 O -0.080 6.080 21 C -0.003 4.003 22 C -0.028 4.028 23 C -0.184 4.184 24 C -0.221 4.221 25 C -0.196 4.196 26 N -0.205 5.205 27 C -0.157 4.157 28 C 0.012 3.988 29 H 0.059 0.941 30 H 0.011 0.989 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.253 0.747 40 H 0.271 0.729 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.114 0.886 44 H 0.121 0.879 45 H 0.109 0.891 46 H 0.120 0.880 47 H 0.131 0.869 48 H 0.074 0.926 49 H 0.094 0.906 50 H 0.028 0.972 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.374 -27.679 20.673 34.711 hybrid contribution 0.022 0.832 -0.669 1.068 sum 3.396 -26.848 20.004 33.652 Atomic orbital electron populations 1.70190 1.06677 1.25870 1.55440 1.25814 0.96069 1.01523 1.01315 0.85337 0.77571 0.79182 0.78337 1.20181 1.21932 1.20359 1.19494 0.92786 0.86205 1.41022 0.91833 1.44326 1.36016 1.02277 1.50869 1.20607 0.87572 0.97709 0.89220 1.22021 1.00802 0.95304 0.97875 1.20873 0.97748 0.94199 0.95994 1.21699 1.03308 0.91664 0.97959 1.21470 1.01622 0.87934 0.89051 1.45801 1.70932 1.06648 1.11850 1.16994 0.76186 0.82201 0.86264 1.90817 1.53724 1.79090 1.21534 1.21698 1.13978 0.94604 0.91689 1.25775 0.97681 0.93850 0.87376 1.84439 1.68127 1.39510 1.15878 1.26831 0.98231 0.79129 0.96060 1.19943 0.97712 1.06680 0.78450 1.22097 0.96990 1.05361 0.93924 1.23172 1.01530 0.93864 1.03537 1.23116 1.04132 0.98987 0.93358 1.70727 1.18348 1.28929 1.02524 1.21982 0.97587 0.98791 0.97297 1.21076 0.96923 0.86295 0.94457 0.94127 0.98938 0.93054 0.91240 0.92974 0.92007 0.90026 0.90589 0.91456 0.91815 0.74715 0.72949 0.85828 0.86246 0.88589 0.87868 0.89128 0.88011 0.86851 0.92582 0.90583 0.97223 0.93259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.59 11.19 21.65 0.24 -56.34 16 2 C -0.05 -2.97 4.92 84.86 0.42 -2.55 16 3 Si 0.97 45.71 29.59 68.60 2.03 47.74 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 7 C -0.26 -15.01 9.58 84.03 0.81 -14.21 16 8 H 0.06 3.52 7.88 -2.91 -0.02 3.50 16 9 N -0.61 -31.67 2.99 -699.09 -2.09 -33.76 16 10 C 0.17 8.59 5.30 86.36 0.46 9.05 16 11 C -0.12 -4.44 5.36 30.67 0.16 -4.27 16 12 C -0.07 -2.13 2.15 -10.77 -0.02 -2.16 16 13 C -0.11 -2.51 4.80 30.59 0.15 -2.37 16 14 C 0.12 2.92 5.43 86.38 0.47 3.39 16 15 N -0.70 -15.89 5.55 -466.36 -2.59 -18.48 16 16 C 0.60 15.28 7.81 86.66 0.68 15.96 16 17 O -0.57 -17.89 16.89 -4.09 -0.07 -17.95 16 18 C -0.10 -2.15 6.99 40.41 0.28 -1.86 16 19 C 0.03 0.44 11.95 67.32 0.80 1.25 16 20 O -0.19 -2.88 10.73 0.33 0.00 -2.88 16 21 C 0.21 3.04 7.51 88.39 0.66 3.71 16 22 C 0.01 0.07 6.12 29.85 0.18 0.25 16 23 C -0.16 -1.33 5.72 -10.79 -0.06 -1.39 16 24 C -0.18 -1.50 10.18 30.62 0.31 -1.19 16 25 C -0.16 -0.82 10.25 30.62 0.31 -0.51 16 26 N -0.48 -9.25 11.06 -293.04 -3.24 -12.49 16 27 C -0.12 -3.94 5.15 30.68 0.16 -3.78 16 28 C 0.14 5.93 6.52 86.37 0.56 6.49 16 29 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 30 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 31 H 0.05 2.86 6.07 -2.39 -0.01 2.85 16 32 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 36 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.07 1.73 6.54 -2.39 -0.02 1.72 16 38 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.42 8.11 8.20 -92.71 -0.76 7.35 16 40 H 0.25 2.58 8.06 -2.91 -0.02 2.55 16 41 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.12 0.69 7.88 -2.39 -0.02 0.67 16 43 H 0.10 0.99 8.07 -2.39 -0.02 0.98 16 44 H 0.10 0.77 8.03 -2.39 -0.02 0.75 16 45 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 48 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 49 H 0.08 2.19 6.50 -2.39 -0.02 2.18 16 50 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 51 H 0.05 2.09 7.93 -2.38 -0.02 2.08 16 Total: -1.00 -73.00 414.38 0.79 -72.22 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.17 Total: 16.15 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 6.33 Total: 5.80 kcal Atomic # 7 Polarization: -113.39 SS G_CDS: -7.68 Total: -121.07 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.07 Total: -20.83 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -73.00 0.79 -72.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319040000.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.131 kcal (2) G-P(sol) polarization free energy of solvation -73.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds