Wall clock time and date at job start Wed Apr 1 2020 04:45:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31618 * 1
3 3 Si 1.86799 * 119.99545 * 2 1
4 4 H 1.48501 * 109.46982 * 180.02562 * 3 2 1
5 5 H 1.48500 * 109.47182 * 299.99839 * 3 2 1
6 6 H 1.48497 * 109.47494 * 59.99958 * 3 2 1
7 7 C 1.38808 * 120.00351 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00305 * 179.97438 * 7 2 1
9 9 N 1.36935 * 119.99865 * 0.02562 * 7 2 1
10 10 C 1.46505 * 120.00135 * 180.02562 * 9 7 2
11 11 C 1.52992 * 109.47578 * 179.97438 * 10 9 7
12 12 H 1.09002 * 109.47103 * 54.99567 * 11 10 9
13 13 C 1.52999 * 109.46961 * 295.00174 * 11 10 9
14 14 C 1.53005 * 109.47159 * 180.02562 * 13 11 10
15 15 C 1.52997 * 109.47452 * 59.99536 * 14 13 11
16 16 C 1.53002 * 109.46817 * 300.00239 * 15 14 13
17 17 C 1.52997 * 109.47482 * 174.99814 * 11 10 9
18 18 H 1.09002 * 109.47153 * 59.99783 * 17 11 10
19 19 N 1.46500 * 109.47007 * 299.99872 * 17 11 10
20 20 C 1.34779 * 119.99793 * 154.99772 * 19 17 11
21 21 O 1.21279 * 120.00185 * 0.02562 * 20 19 17
22 22 C 1.50702 * 119.99614 * 179.97438 * 20 19 17
23 23 O 1.42900 * 109.46704 * 180.02562 * 22 20 19
24 24 C 1.42898 * 113.99847 * 180.02562 * 23 22 20
25 25 C 1.50703 * 109.47325 * 179.97438 * 24 23 22
26 26 C 1.38651 * 120.78845 * 269.72188 * 25 24 23
27 27 C 1.38208 * 119.15576 * 179.75312 * 26 25 24
28 28 N 1.31864 * 120.76624 * 0.53512 * 27 26 25
29 29 C 1.31874 * 121.72859 * 359.73334 * 28 27 26
30 30 C 1.38202 * 120.76095 * 359.97438 * 29 28 27
31 31 H 0.97001 * 120.00806 * 0.02562 * 1 2 3
32 32 H 0.96998 * 120.00328 * 359.97438 * 9 7 2
33 33 H 1.09001 * 109.47096 * 59.99270 * 10 9 7
34 34 H 1.09002 * 109.46667 * 299.99558 * 10 9 7
35 35 H 1.09000 * 109.47486 * 59.99547 * 13 11 10
36 36 H 1.09002 * 109.46716 * 299.99630 * 13 11 10
37 37 H 1.09002 * 109.46935 * 299.99411 * 14 13 11
38 38 H 1.09001 * 109.46812 * 179.97438 * 14 13 11
39 39 H 1.08993 * 109.47194 * 179.97438 * 15 14 13
40 40 H 1.09002 * 109.46695 * 59.99734 * 15 14 13
41 41 H 1.08992 * 109.47063 * 299.99823 * 16 15 14
42 42 H 1.09004 * 109.46733 * 179.97438 * 16 15 14
43 43 H 0.97004 * 120.00223 * 334.99863 * 19 17 11
44 44 H 1.09002 * 109.47423 * 300.00169 * 22 20 19
45 45 H 1.09002 * 109.46795 * 60.00420 * 22 20 19
46 46 H 1.09003 * 109.47566 * 300.00440 * 24 23 22
47 47 H 1.09001 * 109.47326 * 60.00130 * 24 23 22
48 48 H 1.07997 * 120.41854 * 359.97438 * 26 25 24
49 49 H 1.08000 * 119.61423 * 180.29363 * 27 26 25
50 50 H 1.07994 * 119.61750 * 180.02562 * 29 28 27
51 51 H 1.08000 * 120.41863 * 180.02562 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2500 1.6178 0.0000
4 1 3.7101 1.3465 -0.0006
5 1 1.8913 2.3965 -1.2125
6 1 1.8913 2.3965 1.2124
7 6 2.0103 -1.2021 0.0005
8 1 3.0903 -1.2021 0.0001
9 7 1.3257 -2.3880 0.0005
10 6 2.0582 -3.6568 0.0017
11 6 1.0641 -4.8197 0.0021
12 1 0.3803 -4.7134 -0.8400
13 6 0.2688 -4.8103 1.3091
14 6 -0.7249 -5.9737 1.3098
15 6 0.0365 -7.2950 1.1855
16 6 0.8317 -7.3043 -0.1216
17 6 1.8250 -6.1412 -0.1225
18 1 2.5089 -6.2475 0.7196
19 7 2.5865 -6.1501 -1.3741
20 6 3.6862 -6.9209 -1.4883
21 8 4.0451 -7.6074 -0.5552
22 6 4.4691 -6.9305 -2.7760
23 8 5.5814 -7.8187 -2.6504
24 6 6.3943 -7.9015 -3.8227
25 6 7.5313 -8.8602 -3.5790
26 6 8.7398 -8.4126 -3.0677
27 6 9.7581 -9.3219 -2.8526
28 7 9.5935 -10.5989 -3.1376
29 6 8.4600 -11.0590 -3.6300
30 6 7.3954 -10.2099 -3.8660
31 1 -0.4851 0.8400 -0.0004
32 1 0.3557 -2.3881 0.0005
33 1 2.6843 -3.7140 0.8921
34 1 2.6855 -3.7148 -0.8879
35 1 -0.2733 -3.8689 1.3979
36 1 0.9527 -4.9166 2.1512
37 1 -1.4088 -5.8679 0.4677
38 1 -1.2911 -5.9673 2.2412
39 1 -0.6714 -8.1237 1.1865
40 1 0.7204 -7.4007 2.0277
41 1 0.1479 -7.1984 -0.9636
42 1 1.3745 -8.2454 -0.2099
43 1 2.2992 -5.6013 -2.1205
44 1 3.8263 -7.2666 -3.5896
45 1 4.8295 -5.9242 -2.9895
46 1 5.7916 -8.2570 -4.6585
47 1 6.7951 -6.9154 -4.0574
48 1 8.8824 -7.3672 -2.8371
49 1 10.7009 -8.9821 -2.4501
50 1 8.3622 -12.1116 -3.8507
51 1 6.4695 -10.5927 -4.2691
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001322360403.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:45:02
Heat of formation + Delta-G solvation = -50.695239 kcal
Electronic energy + Delta-G solvation = -29846.123084 eV
Core-core repulsion = 25745.077993 eV
Total energy + Delta-G solvation = -4101.045091 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-40.54133 -40.15037 -38.59832 -37.50985 -34.65103 -34.13612 -33.56727 -31.92453
-31.55564 -30.12863 -29.59332 -28.17245 -26.44230 -25.16620 -23.81980 -23.07912
-22.38356 -22.23997 -20.67665 -20.46294 -19.71295 -17.73638 -17.38503 -17.05800
-16.96647 -16.58658 -16.09866 -15.93877 -15.82734 -14.95558 -14.70182 -14.52550
-14.27183 -14.10601 -14.02639 -13.95327 -13.74936 -13.34297 -13.24038 -13.07290
-12.72694 -12.63177 -12.34955 -12.11197 -11.89942 -11.83775 -11.55286 -11.11473
-10.92233 -10.90529 -10.74432 -10.40945 -10.23695 -10.15335 -10.12915 -10.10861
-9.97532 -9.83740 -9.71199 -9.62792 -9.48719 -8.96447 -8.86416 -6.94763
-5.80200 -3.08485 0.76772 0.80038 2.59674 2.70054 3.40228 3.43554
3.46437 3.48310 3.81826 4.13175 4.31129 4.35658 4.53617 4.61811
4.68761 4.75863 4.80475 4.81956 4.90057 4.92869 4.95235 5.01397
5.05706 5.23878 5.26448 5.34515 5.43265 5.54531 5.57166 5.58952
5.61919 5.65838 5.72929 5.88124 5.93461 6.08983 6.12269 6.18764
6.23510 6.27431 6.33270 6.37529 6.49985 6.54581 6.62536 6.66902
6.76311 6.88783 7.51535 7.61887 7.67502 8.22718 8.38885 9.50318
10.08016 10.42869 11.42636
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.009928 B = 0.002168 C = 0.001839
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2819.559091 B =12909.284343 C =15221.291619
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.933 5.933
2 C -0.014 4.014
3 Si 0.906 3.094
4 H -0.281 1.281
5 H -0.292 1.292
6 H -0.291 1.291
7 C -0.237 4.237
8 H 0.069 0.931
9 N -0.731 5.731
10 C 0.159 3.841
11 C -0.099 4.099
12 H 0.075 0.925
13 C -0.107 4.107
14 C -0.121 4.121
15 C -0.115 4.115
16 C -0.126 4.126
17 C 0.156 3.844
18 H 0.088 0.912
19 N -0.718 5.718
20 C 0.515 3.485
21 O -0.523 6.523
22 C 0.042 3.958
23 O -0.355 6.355
24 C 0.098 3.902
25 C -0.044 4.044
26 C -0.150 4.150
27 C 0.096 3.904
28 N -0.483 5.483
29 C 0.095 3.905
30 C -0.151 4.151
31 H 0.254 0.746
32 H 0.384 0.616
33 H 0.018 0.982
34 H 0.018 0.982
35 H 0.080 0.920
36 H 0.061 0.939
37 H 0.061 0.939
38 H 0.061 0.939
39 H 0.060 0.940
40 H 0.062 0.938
41 H 0.062 0.938
42 H 0.063 0.937
43 H 0.402 0.598
44 H 0.081 0.919
45 H 0.084 0.916
46 H 0.065 0.935
47 H 0.067 0.933
48 H 0.138 0.862
49 H 0.158 0.842
50 H 0.157 0.843
51 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.511 -20.274 -9.263 23.859
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.582 5.582
2 C -0.210 4.210
3 Si 0.737 3.263
4 H -0.206 1.206
5 H -0.219 1.219
6 H -0.219 1.219
7 C -0.369 4.369
8 H 0.087 0.913
9 N -0.375 5.375
10 C 0.031 3.969
11 C -0.119 4.119
12 H 0.093 0.907
13 C -0.145 4.145
14 C -0.159 4.159
15 C -0.153 4.153
16 C -0.165 4.165
17 C 0.052 3.948
18 H 0.106 0.894
19 N -0.371 5.371
20 C 0.299 3.701
21 O -0.398 6.398
22 C -0.038 4.038
23 O -0.273 6.273
24 C 0.022 3.978
25 C -0.052 4.052
26 C -0.170 4.170
27 C -0.061 4.061
28 N -0.192 5.192
29 C -0.062 4.062
30 C -0.171 4.171
31 H 0.064 0.936
32 H 0.218 0.782
33 H 0.036 0.964
34 H 0.036 0.964
35 H 0.098 0.902
36 H 0.080 0.920
37 H 0.080 0.920
38 H 0.079 0.921
39 H 0.079 0.921
40 H 0.081 0.919
41 H 0.081 0.919
42 H 0.082 0.918
43 H 0.237 0.763
44 H 0.099 0.901
45 H 0.102 0.898
46 H 0.084 0.916
47 H 0.085 0.915
48 H 0.156 0.844
49 H 0.175 0.825
50 H 0.175 0.825
51 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges 9.657 -21.337 -8.266 24.837
hybrid contribution -0.796 2.079 -0.803 2.367
sum 8.861 -19.258 -9.069 23.058
Atomic orbital electron populations
1.69660 1.05063 1.25523 1.57944 1.24727 0.95526 0.97658 1.03116
0.86135 0.78794 0.84184 0.77195 1.20606 1.21906 1.21855 1.19257
0.91019 0.84183 1.42410 0.91271 1.42374 1.05822 0.99887 1.89444
1.20663 0.93023 0.85346 0.97876 1.21592 0.97700 0.93320 0.99267
0.90664 1.21498 0.97671 0.98862 0.96494 1.21600 0.98071 0.94521
1.01700 1.21487 0.98764 0.97673 0.97390 1.21886 0.97818 0.98451
0.98317 1.21003 0.92588 0.94906 0.86318 0.89414 1.45980 1.27443
1.46147 1.17500 1.20100 0.80806 0.80098 0.89061 1.90730 1.67985
1.40999 1.40045 1.22275 0.89363 0.95513 0.96655 1.88085 1.39104
1.64591 1.35519 1.21374 0.90303 0.97784 0.88345 1.19967 0.94314
0.94283 0.96663 1.22131 0.93795 1.01909 0.99120 1.22797 0.98935
0.88453 0.95877 1.67670 1.24595 1.16321 1.10656 1.22780 0.88347
1.00317 0.94737 1.22092 1.00584 0.93388 1.01010 0.93581 0.78214
0.96390 0.96417 0.90190 0.92024 0.92019 0.92070 0.92146 0.91880
0.91890 0.91820 0.76310 0.90118 0.89771 0.91642 0.91498 0.84436
0.82469 0.82545 0.84582
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16
2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16
3 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16
4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16
5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
7 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16
8 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16
9 N -0.73 -17.72 5.33 -59.91 -0.32 -18.04 16
10 C 0.16 3.05 5.56 -4.04 -0.02 3.03 16
11 C -0.10 -1.49 1.80 -90.63 -0.16 -1.66 16
12 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16
13 C -0.11 -1.60 5.08 -26.73 -0.14 -1.73 16
14 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16
15 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16
16 C -0.13 -1.50 5.49 -26.76 -0.15 -1.65 16
17 C 0.16 2.10 1.90 -67.96 -0.13 1.97 16
18 H 0.09 1.38 7.58 -51.93 -0.39 0.98 16
19 N -0.72 -8.63 4.31 -53.83 -0.23 -8.87 16
20 C 0.51 6.83 7.87 -10.98 -0.09 6.75 16
21 O -0.52 -9.26 16.16 -14.35 -0.23 -9.49 16
22 C 0.04 0.40 6.42 36.01 0.23 0.63 16
23 O -0.35 -4.13 9.86 -55.14 -0.54 -4.67 16
24 C 0.10 0.78 6.11 36.01 0.22 1.00 16
25 C -0.04 -0.40 5.55 -104.32 -0.58 -0.97 16
26 C -0.15 -1.29 9.82 -39.44 -0.39 -1.68 16
27 C 0.10 0.85 11.18 -17.55 -0.20 0.66 16
28 N -0.48 -4.97 10.36 -13.25 -0.14 -5.10 16
29 C 0.09 0.82 11.18 -17.55 -0.20 0.62 16
30 C -0.15 -1.24 9.82 -39.44 -0.39 -1.63 16
31 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16
32 H 0.38 9.73 6.85 -40.82 -0.28 9.45 16
33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16
34 H 0.02 0.34 7.31 -51.93 -0.38 -0.04 16
35 H 0.08 1.39 7.18 -51.93 -0.37 1.01 16
36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16
37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16
39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16
41 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16
42 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16
43 H 0.40 4.03 8.40 -40.82 -0.34 3.69 16
44 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16
45 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16
46 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16
47 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16
48 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16
49 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16
50 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16
51 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16
LS Contribution 416.51 15.07 6.28 6.28
Total: -1.00 -35.14 416.51 -10.53 -45.66
By element:
Atomic # 1 Polarization: 17.43 SS G_CDS: -8.50 Total: 8.93 kcal
Atomic # 6 Polarization: -2.38 SS G_CDS: -2.54 Total: -4.92 kcal
Atomic # 7 Polarization: -58.92 SS G_CDS: 0.04 Total: -58.89 kcal
Atomic # 8 Polarization: -13.39 SS G_CDS: -0.78 Total: -14.17 kcal
Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal
Total LS contribution 6.28 Total: 6.28 kcal
Total: -35.14 -10.53 -45.66 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001322360403.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.031 kcal
(2) G-P(sol) polarization free energy of solvation -35.139 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.170 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.525 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.664 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.695 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds