Wall clock time and date at job start Wed Apr 1 2020 04:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99545 * 2 1 4 4 H 1.48501 * 109.46982 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47182 * 299.99839 * 3 2 1 6 6 H 1.48497 * 109.47494 * 59.99958 * 3 2 1 7 7 C 1.38808 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00305 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99865 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00135 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47578 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47103 * 54.99567 * 11 10 9 13 13 C 1.52999 * 109.46961 * 295.00174 * 11 10 9 14 14 C 1.53005 * 109.47159 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47452 * 59.99536 * 14 13 11 16 16 C 1.53002 * 109.46817 * 300.00239 * 15 14 13 17 17 C 1.52997 * 109.47482 * 174.99814 * 11 10 9 18 18 H 1.09002 * 109.47153 * 59.99783 * 17 11 10 19 19 N 1.46500 * 109.47007 * 299.99872 * 17 11 10 20 20 C 1.34779 * 119.99793 * 154.99772 * 19 17 11 21 21 O 1.21279 * 120.00185 * 0.02562 * 20 19 17 22 22 C 1.50702 * 119.99614 * 179.97438 * 20 19 17 23 23 O 1.42900 * 109.46704 * 180.02562 * 22 20 19 24 24 C 1.42898 * 113.99847 * 180.02562 * 23 22 20 25 25 C 1.50703 * 109.47325 * 179.97438 * 24 23 22 26 26 C 1.38651 * 120.78845 * 269.72188 * 25 24 23 27 27 C 1.38208 * 119.15576 * 179.75312 * 26 25 24 28 28 N 1.31864 * 120.76624 * 0.53512 * 27 26 25 29 29 C 1.31874 * 121.72859 * 359.73334 * 28 27 26 30 30 C 1.38202 * 120.76095 * 359.97438 * 29 28 27 31 31 H 0.97001 * 120.00806 * 0.02562 * 1 2 3 32 32 H 0.96998 * 120.00328 * 359.97438 * 9 7 2 33 33 H 1.09001 * 109.47096 * 59.99270 * 10 9 7 34 34 H 1.09002 * 109.46667 * 299.99558 * 10 9 7 35 35 H 1.09000 * 109.47486 * 59.99547 * 13 11 10 36 36 H 1.09002 * 109.46716 * 299.99630 * 13 11 10 37 37 H 1.09002 * 109.46935 * 299.99411 * 14 13 11 38 38 H 1.09001 * 109.46812 * 179.97438 * 14 13 11 39 39 H 1.08993 * 109.47194 * 179.97438 * 15 14 13 40 40 H 1.09002 * 109.46695 * 59.99734 * 15 14 13 41 41 H 1.08992 * 109.47063 * 299.99823 * 16 15 14 42 42 H 1.09004 * 109.46733 * 179.97438 * 16 15 14 43 43 H 0.97004 * 120.00223 * 334.99863 * 19 17 11 44 44 H 1.09002 * 109.47423 * 300.00169 * 22 20 19 45 45 H 1.09002 * 109.46795 * 60.00420 * 22 20 19 46 46 H 1.09003 * 109.47566 * 300.00440 * 24 23 22 47 47 H 1.09001 * 109.47326 * 60.00130 * 24 23 22 48 48 H 1.07997 * 120.41854 * 359.97438 * 26 25 24 49 49 H 1.08000 * 119.61423 * 180.29363 * 27 26 25 50 50 H 1.07994 * 119.61750 * 180.02562 * 29 28 27 51 51 H 1.08000 * 120.41863 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0017 11 6 1.0641 -4.8197 0.0021 12 1 0.3803 -4.7134 -0.8400 13 6 0.2688 -4.8103 1.3091 14 6 -0.7249 -5.9737 1.3098 15 6 0.0365 -7.2950 1.1855 16 6 0.8317 -7.3043 -0.1216 17 6 1.8250 -6.1412 -0.1225 18 1 2.5089 -6.2475 0.7196 19 7 2.5865 -6.1501 -1.3741 20 6 3.6862 -6.9209 -1.4883 21 8 4.0451 -7.6074 -0.5552 22 6 4.4691 -6.9305 -2.7760 23 8 5.5814 -7.8187 -2.6504 24 6 6.3943 -7.9015 -3.8227 25 6 7.5313 -8.8602 -3.5790 26 6 8.7398 -8.4126 -3.0677 27 6 9.7581 -9.3219 -2.8526 28 7 9.5935 -10.5989 -3.1376 29 6 8.4600 -11.0590 -3.6300 30 6 7.3954 -10.2099 -3.8660 31 1 -0.4851 0.8400 -0.0004 32 1 0.3557 -2.3881 0.0005 33 1 2.6843 -3.7140 0.8921 34 1 2.6855 -3.7148 -0.8879 35 1 -0.2733 -3.8689 1.3979 36 1 0.9527 -4.9166 2.1512 37 1 -1.4088 -5.8679 0.4677 38 1 -1.2911 -5.9673 2.2412 39 1 -0.6714 -8.1237 1.1865 40 1 0.7204 -7.4007 2.0277 41 1 0.1479 -7.1984 -0.9636 42 1 1.3745 -8.2454 -0.2099 43 1 2.2992 -5.6013 -2.1205 44 1 3.8263 -7.2666 -3.5896 45 1 4.8295 -5.9242 -2.9895 46 1 5.7916 -8.2570 -4.6585 47 1 6.7951 -6.9154 -4.0574 48 1 8.8824 -7.3672 -2.8371 49 1 10.7009 -8.9821 -2.4501 50 1 8.3622 -12.1116 -3.8507 51 1 6.4695 -10.5927 -4.2691 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322360403.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:02 Heat of formation + Delta-G solvation = -50.695239 kcal Electronic energy + Delta-G solvation = -29846.123084 eV Core-core repulsion = 25745.077993 eV Total energy + Delta-G solvation = -4101.045091 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.54133 -40.15037 -38.59832 -37.50985 -34.65103 -34.13612 -33.56727 -31.92453 -31.55564 -30.12863 -29.59332 -28.17245 -26.44230 -25.16620 -23.81980 -23.07912 -22.38356 -22.23997 -20.67665 -20.46294 -19.71295 -17.73638 -17.38503 -17.05800 -16.96647 -16.58658 -16.09866 -15.93877 -15.82734 -14.95558 -14.70182 -14.52550 -14.27183 -14.10601 -14.02639 -13.95327 -13.74936 -13.34297 -13.24038 -13.07290 -12.72694 -12.63177 -12.34955 -12.11197 -11.89942 -11.83775 -11.55286 -11.11473 -10.92233 -10.90529 -10.74432 -10.40945 -10.23695 -10.15335 -10.12915 -10.10861 -9.97532 -9.83740 -9.71199 -9.62792 -9.48719 -8.96447 -8.86416 -6.94763 -5.80200 -3.08485 0.76772 0.80038 2.59674 2.70054 3.40228 3.43554 3.46437 3.48310 3.81826 4.13175 4.31129 4.35658 4.53617 4.61811 4.68761 4.75863 4.80475 4.81956 4.90057 4.92869 4.95235 5.01397 5.05706 5.23878 5.26448 5.34515 5.43265 5.54531 5.57166 5.58952 5.61919 5.65838 5.72929 5.88124 5.93461 6.08983 6.12269 6.18764 6.23510 6.27431 6.33270 6.37529 6.49985 6.54581 6.62536 6.66902 6.76311 6.88783 7.51535 7.61887 7.67502 8.22718 8.38885 9.50318 10.08016 10.42869 11.42636 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009928 B = 0.002168 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.559091 B =12909.284343 C =15221.291619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.159 3.841 11 C -0.099 4.099 12 H 0.075 0.925 13 C -0.107 4.107 14 C -0.121 4.121 15 C -0.115 4.115 16 C -0.126 4.126 17 C 0.156 3.844 18 H 0.088 0.912 19 N -0.718 5.718 20 C 0.515 3.485 21 O -0.523 6.523 22 C 0.042 3.958 23 O -0.355 6.355 24 C 0.098 3.902 25 C -0.044 4.044 26 C -0.150 4.150 27 C 0.096 3.904 28 N -0.483 5.483 29 C 0.095 3.905 30 C -0.151 4.151 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.402 0.598 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.138 0.862 49 H 0.158 0.842 50 H 0.157 0.843 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.511 -20.274 -9.263 23.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.031 3.969 11 C -0.119 4.119 12 H 0.093 0.907 13 C -0.145 4.145 14 C -0.159 4.159 15 C -0.153 4.153 16 C -0.165 4.165 17 C 0.052 3.948 18 H 0.106 0.894 19 N -0.371 5.371 20 C 0.299 3.701 21 O -0.398 6.398 22 C -0.038 4.038 23 O -0.273 6.273 24 C 0.022 3.978 25 C -0.052 4.052 26 C -0.170 4.170 27 C -0.061 4.061 28 N -0.192 5.192 29 C -0.062 4.062 30 C -0.171 4.171 31 H 0.064 0.936 32 H 0.218 0.782 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.237 0.763 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.156 0.844 49 H 0.175 0.825 50 H 0.175 0.825 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.657 -21.337 -8.266 24.837 hybrid contribution -0.796 2.079 -0.803 2.367 sum 8.861 -19.258 -9.069 23.058 Atomic orbital electron populations 1.69660 1.05063 1.25523 1.57944 1.24727 0.95526 0.97658 1.03116 0.86135 0.78794 0.84184 0.77195 1.20606 1.21906 1.21855 1.19257 0.91019 0.84183 1.42410 0.91271 1.42374 1.05822 0.99887 1.89444 1.20663 0.93023 0.85346 0.97876 1.21592 0.97700 0.93320 0.99267 0.90664 1.21498 0.97671 0.98862 0.96494 1.21600 0.98071 0.94521 1.01700 1.21487 0.98764 0.97673 0.97390 1.21886 0.97818 0.98451 0.98317 1.21003 0.92588 0.94906 0.86318 0.89414 1.45980 1.27443 1.46147 1.17500 1.20100 0.80806 0.80098 0.89061 1.90730 1.67985 1.40999 1.40045 1.22275 0.89363 0.95513 0.96655 1.88085 1.39104 1.64591 1.35519 1.21374 0.90303 0.97784 0.88345 1.19967 0.94314 0.94283 0.96663 1.22131 0.93795 1.01909 0.99120 1.22797 0.98935 0.88453 0.95877 1.67670 1.24595 1.16321 1.10656 1.22780 0.88347 1.00317 0.94737 1.22092 1.00584 0.93388 1.01010 0.93581 0.78214 0.96390 0.96417 0.90190 0.92024 0.92019 0.92070 0.92146 0.91880 0.91890 0.91820 0.76310 0.90118 0.89771 0.91642 0.91498 0.84436 0.82469 0.82545 0.84582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -17.72 5.33 -59.91 -0.32 -18.04 16 10 C 0.16 3.05 5.56 -4.04 -0.02 3.03 16 11 C -0.10 -1.49 1.80 -90.63 -0.16 -1.66 16 12 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 13 C -0.11 -1.60 5.08 -26.73 -0.14 -1.73 16 14 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16 15 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 16 C -0.13 -1.50 5.49 -26.76 -0.15 -1.65 16 17 C 0.16 2.10 1.90 -67.96 -0.13 1.97 16 18 H 0.09 1.38 7.58 -51.93 -0.39 0.98 16 19 N -0.72 -8.63 4.31 -53.83 -0.23 -8.87 16 20 C 0.51 6.83 7.87 -10.98 -0.09 6.75 16 21 O -0.52 -9.26 16.16 -14.35 -0.23 -9.49 16 22 C 0.04 0.40 6.42 36.01 0.23 0.63 16 23 O -0.35 -4.13 9.86 -55.14 -0.54 -4.67 16 24 C 0.10 0.78 6.11 36.01 0.22 1.00 16 25 C -0.04 -0.40 5.55 -104.32 -0.58 -0.97 16 26 C -0.15 -1.29 9.82 -39.44 -0.39 -1.68 16 27 C 0.10 0.85 11.18 -17.55 -0.20 0.66 16 28 N -0.48 -4.97 10.36 -13.25 -0.14 -5.10 16 29 C 0.09 0.82 11.18 -17.55 -0.20 0.62 16 30 C -0.15 -1.24 9.82 -39.44 -0.39 -1.63 16 31 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.38 9.73 6.85 -40.82 -0.28 9.45 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.02 0.34 7.31 -51.93 -0.38 -0.04 16 35 H 0.08 1.39 7.18 -51.93 -0.37 1.01 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.40 4.03 8.40 -40.82 -0.34 3.69 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 47 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 48 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 49 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 50 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 51 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 416.51 15.07 6.28 6.28 Total: -1.00 -35.14 416.51 -10.53 -45.66 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -8.50 Total: 8.93 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -2.54 Total: -4.92 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: 0.04 Total: -58.89 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.78 Total: -14.17 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -35.14 -10.53 -45.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322360403.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.031 kcal (2) G-P(sol) polarization free energy of solvation -35.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds