Wall clock time and date at job start Wed Apr 1 2020 04:45:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31618 * 1
3 3 Si 1.86799 * 119.99545 * 2 1
4 4 H 1.48501 * 109.46982 * 180.02562 * 3 2 1
5 5 H 1.48500 * 109.47182 * 299.99839 * 3 2 1
6 6 H 1.48497 * 109.47494 * 59.99958 * 3 2 1
7 7 C 1.38808 * 120.00351 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00305 * 179.97438 * 7 2 1
9 9 N 1.36935 * 119.99865 * 0.02562 * 7 2 1
10 10 C 1.46505 * 120.00135 * 180.02562 * 9 7 2
11 11 C 1.52992 * 109.47578 * 179.97438 * 10 9 7
12 12 H 1.09002 * 109.47103 * 54.99567 * 11 10 9
13 13 C 1.52999 * 109.46961 * 295.00174 * 11 10 9
14 14 C 1.53005 * 109.47159 * 180.02562 * 13 11 10
15 15 C 1.52997 * 109.47452 * 59.99536 * 14 13 11
16 16 C 1.53002 * 109.46817 * 300.00239 * 15 14 13
17 17 C 1.52997 * 109.47482 * 174.99814 * 11 10 9
18 18 H 1.09002 * 109.47153 * 59.99783 * 17 11 10
19 19 N 1.46500 * 109.47007 * 299.99872 * 17 11 10
20 20 C 1.34779 * 119.99793 * 154.99772 * 19 17 11
21 21 O 1.21279 * 120.00185 * 0.02562 * 20 19 17
22 22 C 1.50702 * 119.99614 * 179.97438 * 20 19 17
23 23 O 1.42900 * 109.46704 * 180.02562 * 22 20 19
24 24 C 1.42898 * 113.99847 * 180.02562 * 23 22 20
25 25 C 1.50703 * 109.47325 * 179.97438 * 24 23 22
26 26 C 1.38651 * 120.78845 * 269.72188 * 25 24 23
27 27 C 1.38208 * 119.15576 * 179.75312 * 26 25 24
28 28 N 1.31864 * 120.76624 * 0.53512 * 27 26 25
29 29 C 1.31874 * 121.72859 * 359.73334 * 28 27 26
30 30 C 1.38202 * 120.76095 * 359.97438 * 29 28 27
31 31 H 0.97001 * 120.00806 * 0.02562 * 1 2 3
32 32 H 0.96998 * 120.00328 * 359.97438 * 9 7 2
33 33 H 1.09001 * 109.47096 * 59.99270 * 10 9 7
34 34 H 1.09002 * 109.46667 * 299.99558 * 10 9 7
35 35 H 1.09000 * 109.47486 * 59.99547 * 13 11 10
36 36 H 1.09002 * 109.46716 * 299.99630 * 13 11 10
37 37 H 1.09002 * 109.46935 * 299.99411 * 14 13 11
38 38 H 1.09001 * 109.46812 * 179.97438 * 14 13 11
39 39 H 1.08993 * 109.47194 * 179.97438 * 15 14 13
40 40 H 1.09002 * 109.46695 * 59.99734 * 15 14 13
41 41 H 1.08992 * 109.47063 * 299.99823 * 16 15 14
42 42 H 1.09004 * 109.46733 * 179.97438 * 16 15 14
43 43 H 0.97004 * 120.00223 * 334.99863 * 19 17 11
44 44 H 1.09002 * 109.47423 * 300.00169 * 22 20 19
45 45 H 1.09002 * 109.46795 * 60.00420 * 22 20 19
46 46 H 1.09003 * 109.47566 * 300.00440 * 24 23 22
47 47 H 1.09001 * 109.47326 * 60.00130 * 24 23 22
48 48 H 1.07997 * 120.41854 * 359.97438 * 26 25 24
49 49 H 1.08000 * 119.61423 * 180.29363 * 27 26 25
50 50 H 1.07994 * 119.61750 * 180.02562 * 29 28 27
51 51 H 1.08000 * 120.41863 * 180.02562 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2500 1.6178 0.0000
4 1 3.7101 1.3465 -0.0006
5 1 1.8913 2.3965 -1.2125
6 1 1.8913 2.3965 1.2124
7 6 2.0103 -1.2021 0.0005
8 1 3.0903 -1.2021 0.0001
9 7 1.3257 -2.3880 0.0005
10 6 2.0582 -3.6568 0.0017
11 6 1.0641 -4.8197 0.0021
12 1 0.3803 -4.7134 -0.8400
13 6 0.2688 -4.8103 1.3091
14 6 -0.7249 -5.9737 1.3098
15 6 0.0365 -7.2950 1.1855
16 6 0.8317 -7.3043 -0.1216
17 6 1.8250 -6.1412 -0.1225
18 1 2.5089 -6.2475 0.7196
19 7 2.5865 -6.1501 -1.3741
20 6 3.6862 -6.9209 -1.4883
21 8 4.0451 -7.6074 -0.5552
22 6 4.4691 -6.9305 -2.7760
23 8 5.5814 -7.8187 -2.6504
24 6 6.3943 -7.9015 -3.8227
25 6 7.5313 -8.8602 -3.5790
26 6 8.7398 -8.4126 -3.0677
27 6 9.7581 -9.3219 -2.8526
28 7 9.5935 -10.5989 -3.1376
29 6 8.4600 -11.0590 -3.6300
30 6 7.3954 -10.2099 -3.8660
31 1 -0.4851 0.8400 -0.0004
32 1 0.3557 -2.3881 0.0005
33 1 2.6843 -3.7140 0.8921
34 1 2.6855 -3.7148 -0.8879
35 1 -0.2733 -3.8689 1.3979
36 1 0.9527 -4.9166 2.1512
37 1 -1.4088 -5.8679 0.4677
38 1 -1.2911 -5.9673 2.2412
39 1 -0.6714 -8.1237 1.1865
40 1 0.7204 -7.4007 2.0277
41 1 0.1479 -7.1984 -0.9636
42 1 1.3745 -8.2454 -0.2099
43 1 2.2992 -5.6013 -2.1205
44 1 3.8263 -7.2666 -3.5896
45 1 4.8295 -5.9242 -2.9895
46 1 5.7916 -8.2570 -4.6585
47 1 6.7951 -6.9154 -4.0574
48 1 8.8824 -7.3672 -2.8371
49 1 10.7009 -8.9821 -2.4501
50 1 8.3622 -12.1116 -3.8507
51 1 6.4695 -10.5927 -4.2691
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001322360403.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:45:01
Heat of formation + Delta-G solvation = -73.181842 kcal
Electronic energy + Delta-G solvation = -29847.098176 eV
Core-core repulsion = 25745.077993 eV
Total energy + Delta-G solvation = -4102.020183 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-41.30964 -41.07317 -39.60929 -38.40818 -36.41837 -35.22138 -34.21673 -33.68522
-32.15905 -31.22148 -31.11224 -29.01033 -27.27282 -26.72134 -24.72918 -24.43312
-23.40296 -22.99516 -21.99424 -21.52768 -20.81364 -19.29358 -18.44094 -17.96383
-17.70556 -17.41981 -16.89064 -16.81035 -16.69100 -16.53278 -15.87915 -15.65340
-15.36482 -15.29383 -15.11627 -14.82501 -14.73861 -14.61727 -14.51678 -14.13398
-14.00006 -13.65256 -13.34088 -13.23047 -12.94279 -12.78075 -12.76868 -12.66181
-12.46674 -12.19702 -12.07463 -11.92189 -11.85711 -11.51681 -11.34843 -11.14261
-10.97268 -10.86422 -10.77286 -10.64222 -10.48194 -10.10213 -10.00816 -8.98036
-7.95068 -5.22940 0.12484 0.18575 1.46930 1.47962 1.57438 1.59739
1.85453 2.55423 2.73471 3.14151 3.38487 3.54040 3.57460 3.67846
3.77730 3.78559 3.86633 3.94168 4.09971 4.11692 4.19055 4.21989
4.25619 4.29914 4.39230 4.43133 4.45024 4.46518 4.50460 4.53317
4.57489 4.69300 4.85763 4.87466 4.88762 4.97757 5.04595 5.12788
5.16440 5.24550 5.30384 5.31139 5.33185 5.43652 5.48202 5.50788
5.60773 5.74274 5.97507 6.27481 6.56960 6.98780 7.24857 7.34642
8.10026 8.34669 9.28195
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.009928 B = 0.002168 C = 0.001839
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2819.559091 B =12909.284343 C =15221.291619
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.966 5.966
2 C -0.073 4.073
3 Si 0.969 3.031
4 H -0.269 1.269
5 H -0.291 1.291
6 H -0.295 1.295
7 C -0.242 4.242
8 H 0.070 0.930
9 N -0.739 5.739
10 C 0.159 3.841
11 C -0.084 4.084
12 H 0.083 0.917
13 C -0.106 4.106
14 C -0.113 4.113
15 C -0.112 4.112
16 C -0.118 4.118
17 C 0.164 3.836
18 H 0.062 0.938
19 N -0.710 5.710
20 C 0.510 3.490
21 O -0.574 6.574
22 C 0.046 3.954
23 O -0.390 6.390
24 C 0.097 3.903
25 C -0.061 4.061
26 C -0.159 4.159
27 C 0.082 3.918
28 N -0.511 5.511
29 C 0.083 3.917
30 C -0.155 4.155
31 H 0.251 0.749
32 H 0.376 0.624
33 H 0.001 0.999
34 H 0.028 0.972
35 H 0.051 0.949
36 H 0.051 0.949
37 H 0.070 0.930
38 H 0.070 0.930
39 H 0.082 0.918
40 H 0.055 0.945
41 H 0.079 0.921
42 H 0.057 0.943
43 H 0.415 0.585
44 H 0.118 0.882
45 H 0.105 0.895
46 H 0.090 0.910
47 H 0.082 0.918
48 H 0.150 0.850
49 H 0.175 0.825
50 H 0.179 0.821
51 H 0.157 0.843
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.347 -20.882 -10.861 24.974
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.616 5.616
2 C -0.265 4.265
3 Si 0.799 3.201
4 H -0.194 1.194
5 H -0.218 1.218
6 H -0.223 1.223
7 C -0.374 4.374
8 H 0.088 0.912
9 N -0.382 5.382
10 C 0.033 3.967
11 C -0.103 4.103
12 H 0.102 0.898
13 C -0.144 4.144
14 C -0.151 4.151
15 C -0.150 4.150
16 C -0.156 4.156
17 C 0.058 3.942
18 H 0.080 0.920
19 N -0.363 5.363
20 C 0.297 3.703
21 O -0.453 6.453
22 C -0.033 4.033
23 O -0.309 6.309
24 C 0.022 3.978
25 C -0.069 4.069
26 C -0.179 4.179
27 C -0.074 4.074
28 N -0.221 5.221
29 C -0.073 4.073
30 C -0.175 4.175
31 H 0.060 0.940
32 H 0.209 0.791
33 H 0.019 0.981
34 H 0.046 0.954
35 H 0.070 0.930
36 H 0.070 0.930
37 H 0.089 0.911
38 H 0.089 0.911
39 H 0.101 0.899
40 H 0.074 0.926
41 H 0.098 0.902
42 H 0.075 0.925
43 H 0.251 0.749
44 H 0.135 0.865
45 H 0.123 0.877
46 H 0.108 0.892
47 H 0.100 0.900
48 H 0.168 0.832
49 H 0.192 0.808
50 H 0.196 0.804
51 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges 9.512 -21.953 -9.895 25.890
hybrid contribution -0.701 2.231 -0.283 2.355
sum 8.811 -19.722 -10.178 23.878
Atomic orbital electron populations
1.69799 1.06397 1.25949 1.59498 1.25493 0.96387 1.00834 1.03801
0.85135 0.78162 0.80125 0.76702 1.19374 1.21787 1.22259 1.19596
0.91301 0.85465 1.41068 0.91168 1.42521 1.05643 1.00810 1.89233
1.20775 0.93675 0.85005 0.97260 1.21424 0.96851 0.92399 0.99656
0.89842 1.21446 0.97959 0.98945 0.96100 1.21537 0.97400 0.93485
1.02649 1.21478 0.98896 0.97826 0.96777 1.21814 0.97475 0.97013
0.99327 1.20794 0.92414 0.94567 0.86380 0.91989 1.45913 1.27161
1.46003 1.17244 1.20844 0.80630 0.78970 0.89863 1.90707 1.69282
1.43191 1.42138 1.22360 0.89285 0.96625 0.95060 1.88032 1.40003
1.65216 1.37633 1.21553 0.89964 0.98503 0.87819 1.20296 0.94848
0.95015 0.96781 1.22363 0.93888 1.02600 0.99063 1.23156 0.99929
0.88323 0.95961 1.67686 1.25658 1.17094 1.11696 1.23214 0.88125
1.01576 0.94411 1.22367 1.01232 0.93237 1.00630 0.94001 0.79073
0.98053 0.95415 0.92974 0.92997 0.91140 0.91123 0.89926 0.92600
0.90247 0.92469 0.74858 0.86479 0.87698 0.89210 0.89967 0.83185
0.80760 0.80436 0.82579
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -57.64 13.06 21.65 0.28 -57.35 16
2 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16
3 Si 0.97 45.46 29.55 68.60 2.03 47.48 16
4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16
5 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16
6 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16
7 C -0.24 -13.28 9.99 84.03 0.84 -12.44 16
8 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16
9 N -0.74 -36.08 5.33 -343.45 -1.83 -37.91 16
10 C 0.16 6.13 5.56 86.38 0.48 6.61 16
11 C -0.08 -2.48 1.80 -10.80 -0.02 -2.50 16
12 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16
13 C -0.11 -3.18 5.08 30.60 0.16 -3.02 16
14 C -0.11 -2.58 5.92 30.60 0.18 -2.40 16
15 C -0.11 -2.32 5.92 30.59 0.18 -2.14 16
16 C -0.12 -2.60 5.49 30.58 0.17 -2.43 16
17 C 0.16 4.28 1.90 44.97 0.09 4.36 16
18 H 0.06 1.98 7.58 -2.39 -0.02 1.96 16
19 N -0.71 -16.00 4.31 -442.61 -1.91 -17.91 16
20 C 0.51 12.93 7.87 87.66 0.69 13.62 16
21 O -0.57 -20.44 16.16 16.01 0.26 -20.18 16
22 C 0.05 0.76 6.42 71.24 0.46 1.22 16
23 O -0.39 -8.38 9.86 -129.94 -1.28 -9.66 16
24 C 0.10 1.32 6.11 71.24 0.44 1.76 16
25 C -0.06 -1.02 5.55 -19.67 -0.11 -1.13 16
26 C -0.16 -2.66 9.82 22.36 0.22 -2.44 16
27 C 0.08 1.45 11.18 84.68 0.95 2.40 16
28 N -0.51 -10.42 10.36 -195.85 -2.03 -12.45 16
29 C 0.08 1.37 11.18 84.68 0.95 2.32 16
30 C -0.16 -2.36 9.82 22.36 0.22 -2.14 16
31 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16
32 H 0.38 19.37 6.85 -92.71 -0.63 18.73 16
33 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16
34 H 0.03 1.02 7.31 -2.39 -0.02 1.01 16
35 H 0.05 1.85 7.18 -2.39 -0.02 1.83 16
36 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16
37 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16
38 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16
39 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16
40 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16
41 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16
42 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16
43 H 0.41 7.32 8.40 -92.71 -0.78 6.54 16
44 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16
45 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16
46 H 0.09 0.75 8.10 -2.39 -0.02 0.73 16
47 H 0.08 0.83 8.10 -2.39 -0.02 0.81 16
48 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16
49 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16
50 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16
51 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16
Total: -1.00 -77.23 416.51 1.38 -75.85
By element:
Atomic # 1 Polarization: 34.60 SS G_CDS: -0.48 Total: 34.11 kcal
Atomic # 6 Polarization: -8.32 SS G_CDS: 6.34 Total: -1.97 kcal
Atomic # 7 Polarization: -120.14 SS G_CDS: -5.48 Total: -125.62 kcal
Atomic # 8 Polarization: -28.82 SS G_CDS: -1.02 Total: -29.85 kcal
Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal
Total: -77.23 1.38 -75.85 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001322360403.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.664 kcal
(2) G-P(sol) polarization free energy of solvation -77.228 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.564 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.382 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.846 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.182 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds