Wall clock time and date at job start Wed Apr 1 2020 04:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99545 * 2 1 4 4 H 1.48501 * 109.46982 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47182 * 299.99839 * 3 2 1 6 6 H 1.48497 * 109.47494 * 59.99958 * 3 2 1 7 7 C 1.38808 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00305 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99865 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00135 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47578 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47103 * 54.99567 * 11 10 9 13 13 C 1.52999 * 109.46961 * 295.00174 * 11 10 9 14 14 C 1.53005 * 109.47159 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47452 * 59.99536 * 14 13 11 16 16 C 1.53002 * 109.46817 * 300.00239 * 15 14 13 17 17 C 1.52997 * 109.47482 * 174.99814 * 11 10 9 18 18 H 1.09002 * 109.47153 * 59.99783 * 17 11 10 19 19 N 1.46500 * 109.47007 * 299.99872 * 17 11 10 20 20 C 1.34779 * 119.99793 * 154.99772 * 19 17 11 21 21 O 1.21279 * 120.00185 * 0.02562 * 20 19 17 22 22 C 1.50702 * 119.99614 * 179.97438 * 20 19 17 23 23 O 1.42900 * 109.46704 * 180.02562 * 22 20 19 24 24 C 1.42898 * 113.99847 * 180.02562 * 23 22 20 25 25 C 1.50703 * 109.47325 * 179.97438 * 24 23 22 26 26 C 1.38651 * 120.78845 * 269.72188 * 25 24 23 27 27 C 1.38208 * 119.15576 * 179.75312 * 26 25 24 28 28 N 1.31864 * 120.76624 * 0.53512 * 27 26 25 29 29 C 1.31874 * 121.72859 * 359.73334 * 28 27 26 30 30 C 1.38202 * 120.76095 * 359.97438 * 29 28 27 31 31 H 0.97001 * 120.00806 * 0.02562 * 1 2 3 32 32 H 0.96998 * 120.00328 * 359.97438 * 9 7 2 33 33 H 1.09001 * 109.47096 * 59.99270 * 10 9 7 34 34 H 1.09002 * 109.46667 * 299.99558 * 10 9 7 35 35 H 1.09000 * 109.47486 * 59.99547 * 13 11 10 36 36 H 1.09002 * 109.46716 * 299.99630 * 13 11 10 37 37 H 1.09002 * 109.46935 * 299.99411 * 14 13 11 38 38 H 1.09001 * 109.46812 * 179.97438 * 14 13 11 39 39 H 1.08993 * 109.47194 * 179.97438 * 15 14 13 40 40 H 1.09002 * 109.46695 * 59.99734 * 15 14 13 41 41 H 1.08992 * 109.47063 * 299.99823 * 16 15 14 42 42 H 1.09004 * 109.46733 * 179.97438 * 16 15 14 43 43 H 0.97004 * 120.00223 * 334.99863 * 19 17 11 44 44 H 1.09002 * 109.47423 * 300.00169 * 22 20 19 45 45 H 1.09002 * 109.46795 * 60.00420 * 22 20 19 46 46 H 1.09003 * 109.47566 * 300.00440 * 24 23 22 47 47 H 1.09001 * 109.47326 * 60.00130 * 24 23 22 48 48 H 1.07997 * 120.41854 * 359.97438 * 26 25 24 49 49 H 1.08000 * 119.61423 * 180.29363 * 27 26 25 50 50 H 1.07994 * 119.61750 * 180.02562 * 29 28 27 51 51 H 1.08000 * 120.41863 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0017 11 6 1.0641 -4.8197 0.0021 12 1 0.3803 -4.7134 -0.8400 13 6 0.2688 -4.8103 1.3091 14 6 -0.7249 -5.9737 1.3098 15 6 0.0365 -7.2950 1.1855 16 6 0.8317 -7.3043 -0.1216 17 6 1.8250 -6.1412 -0.1225 18 1 2.5089 -6.2475 0.7196 19 7 2.5865 -6.1501 -1.3741 20 6 3.6862 -6.9209 -1.4883 21 8 4.0451 -7.6074 -0.5552 22 6 4.4691 -6.9305 -2.7760 23 8 5.5814 -7.8187 -2.6504 24 6 6.3943 -7.9015 -3.8227 25 6 7.5313 -8.8602 -3.5790 26 6 8.7398 -8.4126 -3.0677 27 6 9.7581 -9.3219 -2.8526 28 7 9.5935 -10.5989 -3.1376 29 6 8.4600 -11.0590 -3.6300 30 6 7.3954 -10.2099 -3.8660 31 1 -0.4851 0.8400 -0.0004 32 1 0.3557 -2.3881 0.0005 33 1 2.6843 -3.7140 0.8921 34 1 2.6855 -3.7148 -0.8879 35 1 -0.2733 -3.8689 1.3979 36 1 0.9527 -4.9166 2.1512 37 1 -1.4088 -5.8679 0.4677 38 1 -1.2911 -5.9673 2.2412 39 1 -0.6714 -8.1237 1.1865 40 1 0.7204 -7.4007 2.0277 41 1 0.1479 -7.1984 -0.9636 42 1 1.3745 -8.2454 -0.2099 43 1 2.2992 -5.6013 -2.1205 44 1 3.8263 -7.2666 -3.5896 45 1 4.8295 -5.9242 -2.9895 46 1 5.7916 -8.2570 -4.6585 47 1 6.7951 -6.9154 -4.0574 48 1 8.8824 -7.3672 -2.8371 49 1 10.7009 -8.9821 -2.4501 50 1 8.3622 -12.1116 -3.8507 51 1 6.4695 -10.5927 -4.2691 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322360403.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:01 Heat of formation + Delta-G solvation = -73.181842 kcal Electronic energy + Delta-G solvation = -29847.098176 eV Core-core repulsion = 25745.077993 eV Total energy + Delta-G solvation = -4102.020183 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.30964 -41.07317 -39.60929 -38.40818 -36.41837 -35.22138 -34.21673 -33.68522 -32.15905 -31.22148 -31.11224 -29.01033 -27.27282 -26.72134 -24.72918 -24.43312 -23.40296 -22.99516 -21.99424 -21.52768 -20.81364 -19.29358 -18.44094 -17.96383 -17.70556 -17.41981 -16.89064 -16.81035 -16.69100 -16.53278 -15.87915 -15.65340 -15.36482 -15.29383 -15.11627 -14.82501 -14.73861 -14.61727 -14.51678 -14.13398 -14.00006 -13.65256 -13.34088 -13.23047 -12.94279 -12.78075 -12.76868 -12.66181 -12.46674 -12.19702 -12.07463 -11.92189 -11.85711 -11.51681 -11.34843 -11.14261 -10.97268 -10.86422 -10.77286 -10.64222 -10.48194 -10.10213 -10.00816 -8.98036 -7.95068 -5.22940 0.12484 0.18575 1.46930 1.47962 1.57438 1.59739 1.85453 2.55423 2.73471 3.14151 3.38487 3.54040 3.57460 3.67846 3.77730 3.78559 3.86633 3.94168 4.09971 4.11692 4.19055 4.21989 4.25619 4.29914 4.39230 4.43133 4.45024 4.46518 4.50460 4.53317 4.57489 4.69300 4.85763 4.87466 4.88762 4.97757 5.04595 5.12788 5.16440 5.24550 5.30384 5.31139 5.33185 5.43652 5.48202 5.50788 5.60773 5.74274 5.97507 6.27481 6.56960 6.98780 7.24857 7.34642 8.10026 8.34669 9.28195 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009928 B = 0.002168 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.559091 B =12909.284343 C =15221.291619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.073 4.073 3 Si 0.969 3.031 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.295 1.295 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.739 5.739 10 C 0.159 3.841 11 C -0.084 4.084 12 H 0.083 0.917 13 C -0.106 4.106 14 C -0.113 4.113 15 C -0.112 4.112 16 C -0.118 4.118 17 C 0.164 3.836 18 H 0.062 0.938 19 N -0.710 5.710 20 C 0.510 3.490 21 O -0.574 6.574 22 C 0.046 3.954 23 O -0.390 6.390 24 C 0.097 3.903 25 C -0.061 4.061 26 C -0.159 4.159 27 C 0.082 3.918 28 N -0.511 5.511 29 C 0.083 3.917 30 C -0.155 4.155 31 H 0.251 0.749 32 H 0.376 0.624 33 H 0.001 0.999 34 H 0.028 0.972 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.055 0.945 41 H 0.079 0.921 42 H 0.057 0.943 43 H 0.415 0.585 44 H 0.118 0.882 45 H 0.105 0.895 46 H 0.090 0.910 47 H 0.082 0.918 48 H 0.150 0.850 49 H 0.175 0.825 50 H 0.179 0.821 51 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.347 -20.882 -10.861 24.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.265 4.265 3 Si 0.799 3.201 4 H -0.194 1.194 5 H -0.218 1.218 6 H -0.223 1.223 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.382 5.382 10 C 0.033 3.967 11 C -0.103 4.103 12 H 0.102 0.898 13 C -0.144 4.144 14 C -0.151 4.151 15 C -0.150 4.150 16 C -0.156 4.156 17 C 0.058 3.942 18 H 0.080 0.920 19 N -0.363 5.363 20 C 0.297 3.703 21 O -0.453 6.453 22 C -0.033 4.033 23 O -0.309 6.309 24 C 0.022 3.978 25 C -0.069 4.069 26 C -0.179 4.179 27 C -0.074 4.074 28 N -0.221 5.221 29 C -0.073 4.073 30 C -0.175 4.175 31 H 0.060 0.940 32 H 0.209 0.791 33 H 0.019 0.981 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.251 0.749 44 H 0.135 0.865 45 H 0.123 0.877 46 H 0.108 0.892 47 H 0.100 0.900 48 H 0.168 0.832 49 H 0.192 0.808 50 H 0.196 0.804 51 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.512 -21.953 -9.895 25.890 hybrid contribution -0.701 2.231 -0.283 2.355 sum 8.811 -19.722 -10.178 23.878 Atomic orbital electron populations 1.69799 1.06397 1.25949 1.59498 1.25493 0.96387 1.00834 1.03801 0.85135 0.78162 0.80125 0.76702 1.19374 1.21787 1.22259 1.19596 0.91301 0.85465 1.41068 0.91168 1.42521 1.05643 1.00810 1.89233 1.20775 0.93675 0.85005 0.97260 1.21424 0.96851 0.92399 0.99656 0.89842 1.21446 0.97959 0.98945 0.96100 1.21537 0.97400 0.93485 1.02649 1.21478 0.98896 0.97826 0.96777 1.21814 0.97475 0.97013 0.99327 1.20794 0.92414 0.94567 0.86380 0.91989 1.45913 1.27161 1.46003 1.17244 1.20844 0.80630 0.78970 0.89863 1.90707 1.69282 1.43191 1.42138 1.22360 0.89285 0.96625 0.95060 1.88032 1.40003 1.65216 1.37633 1.21553 0.89964 0.98503 0.87819 1.20296 0.94848 0.95015 0.96781 1.22363 0.93888 1.02600 0.99063 1.23156 0.99929 0.88323 0.95961 1.67686 1.25658 1.17094 1.11696 1.23214 0.88125 1.01576 0.94411 1.22367 1.01232 0.93237 1.00630 0.94001 0.79073 0.98053 0.95415 0.92974 0.92997 0.91140 0.91123 0.89926 0.92600 0.90247 0.92469 0.74858 0.86479 0.87698 0.89210 0.89967 0.83185 0.80760 0.80436 0.82579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.64 13.06 21.65 0.28 -57.35 16 2 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 3 Si 0.97 45.46 29.55 68.60 2.03 47.48 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 6 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 7 C -0.24 -13.28 9.99 84.03 0.84 -12.44 16 8 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16 9 N -0.74 -36.08 5.33 -343.45 -1.83 -37.91 16 10 C 0.16 6.13 5.56 86.38 0.48 6.61 16 11 C -0.08 -2.48 1.80 -10.80 -0.02 -2.50 16 12 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 13 C -0.11 -3.18 5.08 30.60 0.16 -3.02 16 14 C -0.11 -2.58 5.92 30.60 0.18 -2.40 16 15 C -0.11 -2.32 5.92 30.59 0.18 -2.14 16 16 C -0.12 -2.60 5.49 30.58 0.17 -2.43 16 17 C 0.16 4.28 1.90 44.97 0.09 4.36 16 18 H 0.06 1.98 7.58 -2.39 -0.02 1.96 16 19 N -0.71 -16.00 4.31 -442.61 -1.91 -17.91 16 20 C 0.51 12.93 7.87 87.66 0.69 13.62 16 21 O -0.57 -20.44 16.16 16.01 0.26 -20.18 16 22 C 0.05 0.76 6.42 71.24 0.46 1.22 16 23 O -0.39 -8.38 9.86 -129.94 -1.28 -9.66 16 24 C 0.10 1.32 6.11 71.24 0.44 1.76 16 25 C -0.06 -1.02 5.55 -19.67 -0.11 -1.13 16 26 C -0.16 -2.66 9.82 22.36 0.22 -2.44 16 27 C 0.08 1.45 11.18 84.68 0.95 2.40 16 28 N -0.51 -10.42 10.36 -195.85 -2.03 -12.45 16 29 C 0.08 1.37 11.18 84.68 0.95 2.32 16 30 C -0.16 -2.36 9.82 22.36 0.22 -2.14 16 31 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 32 H 0.38 19.37 6.85 -92.71 -0.63 18.73 16 33 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.03 1.02 7.31 -2.39 -0.02 1.01 16 35 H 0.05 1.85 7.18 -2.39 -0.02 1.83 16 36 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.41 7.32 8.40 -92.71 -0.78 6.54 16 44 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.09 0.75 8.10 -2.39 -0.02 0.73 16 47 H 0.08 0.83 8.10 -2.39 -0.02 0.81 16 48 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 49 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 50 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 51 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -77.23 416.51 1.38 -75.85 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: -0.48 Total: 34.11 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: 6.34 Total: -1.97 kcal Atomic # 7 Polarization: -120.14 SS G_CDS: -5.48 Total: -125.62 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -1.02 Total: -29.85 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -77.23 1.38 -75.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322360403.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.664 kcal (2) G-P(sol) polarization free energy of solvation -77.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds