Wall clock time and date at job start Wed Apr 1 2020 04:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86798 * 120.00022 * 2 1 4 4 H 1.48503 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47122 * 299.99514 * 3 2 1 6 6 H 1.48499 * 109.47458 * 59.99691 * 3 2 1 7 7 C 1.38818 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00188 * 168.45359 * 7 2 1 9 9 N 1.36939 * 119.99839 * 348.46293 * 7 2 1 10 10 C 1.46921 * 120.62985 * 149.44593 * 9 7 2 11 11 C 1.53200 * 108.77404 * 126.41649 * 10 9 7 12 12 C 1.53042 * 109.31327 * 54.63236 * 11 10 9 13 13 C 1.53041 * 109.53867 * 298.63606 * 12 11 10 14 14 C 1.52994 * 109.49777 * 181.31643 * 13 12 11 15 15 O 1.42899 * 109.47443 * 174.84947 * 14 13 12 16 16 N 1.46497 * 109.49874 * 301.38326 * 13 12 11 17 17 C 1.34775 * 120.00217 * 296.93478 * 16 13 12 18 18 O 1.21636 * 119.99630 * 5.06547 * 17 16 13 19 19 C 1.47259 * 120.00578 * 185.06893 * 17 16 13 20 20 C 1.46739 * 126.93007 * 179.97438 * 19 17 16 21 21 C 1.34056 * 106.31632 * 180.02562 * 20 19 17 22 22 N 1.37085 * 109.04246 * 0.03295 * 21 20 19 23 23 C 1.34575 * 109.94473 * 359.67347 * 22 21 20 24 24 C 1.47032 * 123.95176 * 179.97438 * 22 21 20 25 25 C 1.53139 * 108.84480 * 342.45456 * 24 22 21 26 26 C 1.53132 * 109.59575 * 51.19894 * 25 24 22 27 27 C 1.51088 * 126.73210 * 180.02562 * 21 20 19 28 28 C 1.46928 * 120.63068 * 329.46959 * 9 7 2 29 29 H 0.96998 * 120.00310 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.58816 * 6.62688 * 10 9 7 31 31 H 1.08998 * 109.70836 * 246.26717 * 10 9 7 32 32 H 1.08997 * 109.49015 * 294.68068 * 11 10 9 33 33 H 1.09001 * 109.52426 * 174.60419 * 11 10 9 34 34 H 1.09000 * 109.45693 * 178.61757 * 12 11 10 35 35 H 1.09003 * 109.45688 * 58.65468 * 12 11 10 36 36 H 1.09001 * 109.46794 * 54.84663 * 14 13 12 37 37 H 1.09005 * 109.47183 * 294.84625 * 14 13 12 38 38 H 0.96700 * 114.00376 * 180.02562 * 15 14 13 39 39 H 0.97004 * 120.00193 * 116.92800 * 16 13 12 40 40 H 1.08001 * 126.83837 * 359.97438 * 20 19 17 41 41 H 1.08005 * 125.72743 * 180.33436 * 23 22 21 42 42 H 1.09001 * 109.57679 * 222.64242 * 24 22 21 43 43 H 1.08998 * 109.57563 * 102.26320 * 24 22 21 44 44 H 1.09007 * 109.45041 * 291.16540 * 25 24 22 45 45 H 1.09000 * 109.43370 * 171.22951 * 25 24 22 46 46 H 1.08999 * 109.52407 * 169.94220 * 26 25 24 47 47 H 1.08998 * 109.57802 * 49.77487 * 26 25 24 48 48 H 1.09008 * 109.71433 * 283.87690 * 27 21 20 49 49 H 1.09003 * 109.72007 * 44.52169 * 27 21 20 50 50 H 1.09004 * 109.58563 * 113.79926 * 28 9 7 51 51 H 1.09003 * 109.58423 * 353.37604 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0738 -1.2117 -0.1867 9 7 1.3463 -2.3760 0.2383 10 6 1.8054 -3.6321 -0.3701 11 6 1.9978 -4.6743 0.7362 12 6 0.7028 -4.8024 1.5416 13 6 0.3719 -3.4590 2.1958 14 6 -0.9050 -3.5967 3.0273 15 8 -1.1477 -2.3781 3.7329 16 7 1.4793 -3.0520 3.0642 17 6 1.8083 -3.8033 4.1336 18 8 1.2479 -4.8655 4.3262 19 6 2.8462 -3.3382 5.0691 20 6 3.3205 -4.0285 6.2740 21 6 4.2636 -3.2422 6.8119 22 7 4.4082 -2.1219 6.0353 23 6 3.5662 -2.1782 4.9869 24 6 5.3578 -1.0377 6.3265 25 6 5.7971 -1.1448 7.7896 26 6 6.2694 -2.5720 8.0810 27 6 5.0581 -3.5138 8.0679 28 6 0.1611 -2.4032 1.1061 29 1 -0.4850 0.8400 -0.0004 30 1 2.7524 -3.4649 -0.8832 31 1 1.0617 -3.9888 -1.0826 32 1 2.8067 -4.3597 1.3955 33 1 2.2457 -5.6375 0.2902 34 1 0.8291 -5.5611 2.3140 35 1 -0.1109 -5.0929 0.8770 36 1 -0.7878 -4.4125 3.7406 37 1 -1.7468 -3.8086 2.3680 38 1 -1.9433 -2.3934 4.2825 39 1 1.9759 -2.2418 2.8694 40 1 2.9774 -4.9800 6.6525 41 1 3.4727 -1.4313 4.2123 42 1 4.8751 -0.0748 6.1596 43 1 6.2278 -1.1298 5.6764 44 1 4.9568 -0.9007 8.4397 45 1 6.6139 -0.4472 7.9750 46 1 6.7457 -2.6052 9.0608 47 1 6.9830 -2.8835 7.3182 48 1 4.4362 -3.3284 8.9438 49 1 5.3989 -4.5492 8.0709 50 1 -0.7187 -2.6585 0.5152 51 1 0.0231 -1.4250 1.5668 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325874008.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:42 Heat of formation + Delta-G solvation = -21.496703 kcal Electronic energy + Delta-G solvation = -32593.811501 eV Core-core repulsion = 28494.032554 eV Total energy + Delta-G solvation = -4099.778947 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.42053 -39.53858 -37.12338 -35.89238 -35.73603 -33.54036 -32.75412 -32.43936 -30.54781 -29.80006 -28.81973 -27.43816 -25.37384 -24.95240 -24.55023 -22.61732 -22.08975 -21.67224 -20.52298 -19.29090 -18.85053 -18.17149 -17.17450 -16.74136 -16.63049 -16.06519 -15.61696 -15.08199 -14.62526 -14.47514 -14.38079 -14.15502 -13.97327 -13.81760 -13.65169 -13.55573 -13.21802 -13.04128 -12.91457 -12.54176 -12.34147 -12.24796 -11.99869 -11.80145 -11.60733 -11.37703 -11.33385 -11.19858 -11.06350 -10.98575 -10.91752 -10.72934 -10.38437 -10.14414 -9.89923 -9.73503 -9.49875 -9.44814 -8.78324 -8.51026 -8.40891 -8.14940 -7.91629 -6.62250 -5.78836 -3.26467 2.10500 2.59575 2.85542 3.33067 3.40588 3.42664 4.01118 4.16481 4.25628 4.38572 4.44902 4.46070 4.70481 4.83154 4.99811 5.06948 5.15555 5.21012 5.34917 5.38126 5.45102 5.49110 5.50770 5.56691 5.64616 5.74176 5.75379 5.86217 5.86563 5.95159 5.95541 6.09738 6.19277 6.27215 6.31231 6.46575 6.52205 6.61691 6.64472 6.80294 6.92232 6.99374 7.09312 7.20132 7.22876 7.35745 7.52057 7.72235 7.80249 8.20287 8.45826 8.50879 9.09176 9.20881 9.83097 10.42204 11.28433 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009895 B = 0.004046 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.054418 B = 6918.404972 C = 8481.939621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.007 3.993 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.256 4.256 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.143 3.857 11 C -0.127 4.127 12 C -0.120 4.120 13 C 0.159 3.841 14 C 0.069 3.931 15 O -0.559 6.559 16 N -0.685 5.685 17 C 0.589 3.411 18 O -0.565 6.565 19 C -0.218 4.218 20 C -0.139 4.139 21 C 0.003 3.997 22 N -0.442 5.442 23 C 0.051 3.949 24 C 0.101 3.899 25 C -0.133 4.133 26 C -0.124 4.124 27 C -0.049 4.049 28 C 0.175 3.825 29 H 0.254 0.746 30 H 0.051 0.949 31 H 0.016 0.984 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.042 0.958 38 H 0.366 0.634 39 H 0.403 0.597 40 H 0.143 0.857 41 H 0.170 0.830 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.084 0.916 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.078 0.922 49 H 0.083 0.917 50 H 0.029 0.971 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.832 -4.236 15.147 18.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.193 4.193 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.386 4.386 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.017 3.983 11 C -0.166 4.166 12 C -0.159 4.159 13 C 0.071 3.929 14 C -0.010 4.010 15 O -0.362 6.362 16 N -0.334 5.334 17 C 0.377 3.623 18 O -0.447 6.447 19 C -0.228 4.228 20 C -0.163 4.163 21 C -0.105 4.105 22 N -0.119 5.119 23 C -0.083 4.083 24 C -0.021 4.021 25 C -0.171 4.171 26 C -0.162 4.162 27 C -0.086 4.086 28 C 0.049 3.951 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.210 0.790 39 H 0.239 0.761 40 H 0.161 0.839 41 H 0.187 0.813 42 H 0.108 0.892 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.092 0.908 47 H 0.087 0.913 48 H 0.096 0.904 49 H 0.102 0.898 50 H 0.047 0.953 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.114 -4.349 14.993 18.077 hybrid contribution 0.001 1.203 -0.045 1.203 sum 9.115 -3.147 14.948 17.789 Atomic orbital electron populations 1.69964 1.05186 1.25398 1.53636 1.25140 0.95322 0.98251 1.00538 0.86267 0.79202 0.84194 0.77349 1.20339 1.21676 1.21602 1.19200 0.91038 0.83915 1.44429 0.91733 1.44022 1.32002 1.03182 1.52116 1.20970 0.97466 0.87145 0.92754 1.21905 0.97364 0.98595 0.98775 1.21749 0.98059 0.96978 0.99085 1.21150 0.83938 0.97102 0.90703 1.22582 0.96661 0.86837 0.94960 1.86573 1.48360 1.36770 1.64495 1.45644 1.34283 1.27455 1.26017 1.17337 0.81232 0.83555 0.80134 1.90617 1.55419 1.23073 1.75550 1.20562 1.04057 0.97662 1.00548 1.21468 0.98694 1.00215 0.95949 1.20216 1.03288 0.89491 0.97502 1.43833 1.30781 1.16979 1.20355 1.21924 0.93811 0.99872 0.92731 1.22061 0.92556 0.89742 0.97698 1.21836 1.02178 0.98214 0.94833 1.21641 0.97773 0.94294 1.02501 1.20317 0.94875 1.00239 0.93215 1.21036 0.88510 0.97498 0.88058 0.93576 0.93027 0.96564 0.92403 0.93323 0.90970 0.92375 0.92284 0.93987 0.78958 0.76121 0.83943 0.81264 0.89223 0.90008 0.90745 0.89755 0.90814 0.91348 0.90391 0.89828 0.95326 0.87765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.41 11.04 55.49 0.61 -24.80 16 2 C 0.01 0.18 5.03 -17.43 -0.09 0.09 16 3 Si 0.90 20.93 29.57 -169.99 -5.03 15.90 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.26 -6.72 9.59 -15.06 -0.14 -6.86 16 8 H 0.06 1.67 7.86 -52.49 -0.41 1.26 16 9 N -0.59 -14.37 2.85 -172.32 -0.49 -14.86 16 10 C 0.14 3.04 6.52 -3.71 -0.02 3.02 16 11 C -0.13 -2.42 5.93 -26.61 -0.16 -2.58 16 12 C -0.12 -2.32 4.52 -26.69 -0.12 -2.44 16 13 C 0.16 3.24 0.45 -131.70 -0.06 3.18 16 14 C 0.07 1.30 5.59 37.15 0.21 1.51 16 15 O -0.56 -10.51 13.08 -35.23 -0.46 -10.97 16 16 N -0.69 -13.61 3.94 -48.61 -0.19 -13.81 16 17 C 0.59 11.61 7.22 -12.59 -0.09 11.52 16 18 O -0.57 -12.22 13.28 5.25 0.07 -12.15 16 19 C -0.22 -3.78 6.29 -103.33 -0.65 -4.43 16 20 C -0.14 -2.14 10.88 -37.62 -0.41 -2.55 16 21 C 0.00 0.03 6.53 -81.53 -0.53 -0.50 16 22 N -0.44 -5.54 3.11 -111.87 -0.35 -5.89 16 23 C 0.05 0.77 10.90 -16.88 -0.18 0.58 16 24 C 0.10 0.88 6.89 -3.68 -0.03 0.86 16 25 C -0.13 -0.90 5.91 -26.59 -0.16 -1.06 16 26 C -0.12 -0.86 5.97 -26.44 -0.16 -1.01 16 27 C -0.05 -0.43 6.26 -27.47 -0.17 -0.60 16 28 C 0.18 4.16 3.82 -3.71 -0.01 4.14 16 29 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 1.16 7.53 -51.93 -0.39 0.77 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.44 6.26 -51.93 -0.33 1.12 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 1.14 6.29 -51.93 -0.33 0.82 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.37 5.04 9.12 45.56 0.42 5.46 16 39 H 0.40 8.25 7.38 -40.82 -0.30 7.95 16 40 H 0.14 2.12 8.06 -52.49 -0.42 1.70 16 41 H 0.17 2.38 7.46 -52.48 -0.39 1.99 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 45 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 48 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 49 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.10 2.80 5.91 -51.93 -0.31 2.50 16 LS Contribution 394.37 15.07 5.94 5.94 Total: -1.00 -32.73 394.37 -10.17 -42.91 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: -7.50 Total: 14.85 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -2.78 Total: 2.88 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.42 Total: -59.36 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.39 Total: -23.12 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.73 -10.17 -42.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325874008.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.412 kcal (2) G-P(sol) polarization free energy of solvation -32.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds