Wall clock time and date at job start Wed Apr 1 2020 04:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86798 * 120.00022 * 2 1 4 4 H 1.48503 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47122 * 299.99514 * 3 2 1 6 6 H 1.48499 * 109.47458 * 59.99691 * 3 2 1 7 7 C 1.38818 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00188 * 168.45359 * 7 2 1 9 9 N 1.36939 * 119.99839 * 348.46293 * 7 2 1 10 10 C 1.46921 * 120.62985 * 149.44593 * 9 7 2 11 11 C 1.53200 * 108.77404 * 126.41649 * 10 9 7 12 12 C 1.53042 * 109.31327 * 54.63236 * 11 10 9 13 13 C 1.53041 * 109.53867 * 298.63606 * 12 11 10 14 14 C 1.52994 * 109.49777 * 181.31643 * 13 12 11 15 15 O 1.42899 * 109.47443 * 174.84947 * 14 13 12 16 16 N 1.46497 * 109.49874 * 301.38326 * 13 12 11 17 17 C 1.34775 * 120.00217 * 296.93478 * 16 13 12 18 18 O 1.21636 * 119.99630 * 5.06547 * 17 16 13 19 19 C 1.47259 * 120.00578 * 185.06893 * 17 16 13 20 20 C 1.46739 * 126.93007 * 179.97438 * 19 17 16 21 21 C 1.34056 * 106.31632 * 180.02562 * 20 19 17 22 22 N 1.37085 * 109.04246 * 0.03295 * 21 20 19 23 23 C 1.34575 * 109.94473 * 359.67347 * 22 21 20 24 24 C 1.47032 * 123.95176 * 179.97438 * 22 21 20 25 25 C 1.53139 * 108.84480 * 342.45456 * 24 22 21 26 26 C 1.53132 * 109.59575 * 51.19894 * 25 24 22 27 27 C 1.51088 * 126.73210 * 180.02562 * 21 20 19 28 28 C 1.46928 * 120.63068 * 329.46959 * 9 7 2 29 29 H 0.96998 * 120.00310 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.58816 * 6.62688 * 10 9 7 31 31 H 1.08998 * 109.70836 * 246.26717 * 10 9 7 32 32 H 1.08997 * 109.49015 * 294.68068 * 11 10 9 33 33 H 1.09001 * 109.52426 * 174.60419 * 11 10 9 34 34 H 1.09000 * 109.45693 * 178.61757 * 12 11 10 35 35 H 1.09003 * 109.45688 * 58.65468 * 12 11 10 36 36 H 1.09001 * 109.46794 * 54.84663 * 14 13 12 37 37 H 1.09005 * 109.47183 * 294.84625 * 14 13 12 38 38 H 0.96700 * 114.00376 * 180.02562 * 15 14 13 39 39 H 0.97004 * 120.00193 * 116.92800 * 16 13 12 40 40 H 1.08001 * 126.83837 * 359.97438 * 20 19 17 41 41 H 1.08005 * 125.72743 * 180.33436 * 23 22 21 42 42 H 1.09001 * 109.57679 * 222.64242 * 24 22 21 43 43 H 1.08998 * 109.57563 * 102.26320 * 24 22 21 44 44 H 1.09007 * 109.45041 * 291.16540 * 25 24 22 45 45 H 1.09000 * 109.43370 * 171.22951 * 25 24 22 46 46 H 1.08999 * 109.52407 * 169.94220 * 26 25 24 47 47 H 1.08998 * 109.57802 * 49.77487 * 26 25 24 48 48 H 1.09008 * 109.71433 * 283.87690 * 27 21 20 49 49 H 1.09003 * 109.72007 * 44.52169 * 27 21 20 50 50 H 1.09004 * 109.58563 * 113.79926 * 28 9 7 51 51 H 1.09003 * 109.58423 * 353.37604 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0738 -1.2117 -0.1867 9 7 1.3463 -2.3760 0.2383 10 6 1.8054 -3.6321 -0.3701 11 6 1.9978 -4.6743 0.7362 12 6 0.7028 -4.8024 1.5416 13 6 0.3719 -3.4590 2.1958 14 6 -0.9050 -3.5967 3.0273 15 8 -1.1477 -2.3781 3.7329 16 7 1.4793 -3.0520 3.0642 17 6 1.8083 -3.8033 4.1336 18 8 1.2479 -4.8655 4.3262 19 6 2.8462 -3.3382 5.0691 20 6 3.3205 -4.0285 6.2740 21 6 4.2636 -3.2422 6.8119 22 7 4.4082 -2.1219 6.0353 23 6 3.5662 -2.1782 4.9869 24 6 5.3578 -1.0377 6.3265 25 6 5.7971 -1.1448 7.7896 26 6 6.2694 -2.5720 8.0810 27 6 5.0581 -3.5138 8.0679 28 6 0.1611 -2.4032 1.1061 29 1 -0.4850 0.8400 -0.0004 30 1 2.7524 -3.4649 -0.8832 31 1 1.0617 -3.9888 -1.0826 32 1 2.8067 -4.3597 1.3955 33 1 2.2457 -5.6375 0.2902 34 1 0.8291 -5.5611 2.3140 35 1 -0.1109 -5.0929 0.8770 36 1 -0.7878 -4.4125 3.7406 37 1 -1.7468 -3.8086 2.3680 38 1 -1.9433 -2.3934 4.2825 39 1 1.9759 -2.2418 2.8694 40 1 2.9774 -4.9800 6.6525 41 1 3.4727 -1.4313 4.2123 42 1 4.8751 -0.0748 6.1596 43 1 6.2278 -1.1298 5.6764 44 1 4.9568 -0.9007 8.4397 45 1 6.6139 -0.4472 7.9750 46 1 6.7457 -2.6052 9.0608 47 1 6.9830 -2.8835 7.3182 48 1 4.4362 -3.3284 8.9438 49 1 5.3989 -4.5492 8.0709 50 1 -0.7187 -2.6585 0.5152 51 1 0.0231 -1.4250 1.5668 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325874008.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:41 Heat of formation + Delta-G solvation = -42.856285 kcal Electronic energy + Delta-G solvation = -32594.737722 eV Core-core repulsion = 28494.032554 eV Total energy + Delta-G solvation = -4100.705168 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.46533 -41.11059 -38.71279 -37.35209 -36.65936 -35.31677 -34.16355 -33.61674 -32.17143 -31.55280 -29.98608 -28.34225 -27.30938 -26.61944 -25.41623 -24.02986 -23.73437 -22.48647 -22.12529 -20.73967 -20.12148 -19.40029 -18.78643 -18.17488 -18.16454 -17.28666 -16.82992 -16.48915 -16.27492 -15.95738 -15.71232 -15.35815 -15.10416 -15.00317 -14.79805 -14.70659 -14.64440 -14.45285 -14.30766 -14.10292 -13.92679 -13.53298 -13.42223 -13.20596 -12.98188 -12.84004 -12.74370 -12.53722 -12.41357 -12.17296 -11.93785 -11.93235 -11.77156 -11.68313 -11.66709 -11.47429 -11.21458 -11.03126 -10.54071 -10.37773 -9.78909 -9.43519 -9.07271 -8.60921 -7.82245 -5.32999 0.84854 1.47852 1.49033 1.50011 1.59768 1.91509 2.50169 2.53309 2.73418 3.32961 3.37443 3.61673 3.69093 3.75693 3.82514 3.90699 4.08858 4.11178 4.13362 4.27474 4.32660 4.38033 4.40273 4.48891 4.51359 4.56284 4.60704 4.69159 4.83413 4.85804 4.86877 4.90447 4.94434 4.99780 5.00651 5.06964 5.14377 5.16980 5.20853 5.22526 5.33214 5.37620 5.51451 5.65715 5.78097 5.80087 5.89975 6.12511 6.37587 6.44620 6.91882 6.93700 7.17801 7.54836 7.86599 8.42014 9.23213 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009895 B = 0.004046 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.054418 B = 6918.404972 C = 8481.939621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.042 4.042 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.297 1.297 6 H -0.291 1.291 7 C -0.260 4.260 8 H 0.068 0.932 9 N -0.604 5.604 10 C 0.141 3.859 11 C -0.115 4.115 12 C -0.115 4.115 13 C 0.161 3.839 14 C 0.075 3.925 15 O -0.577 6.577 16 N -0.684 5.684 17 C 0.588 3.412 18 O -0.591 6.591 19 C -0.254 4.254 20 C -0.172 4.172 21 C 0.020 3.980 22 N -0.436 5.436 23 C 0.052 3.948 24 C 0.089 3.911 25 C -0.129 4.129 26 C -0.121 4.121 27 C -0.051 4.051 28 C 0.194 3.806 29 H 0.249 0.751 30 H 0.056 0.944 31 H 0.016 0.984 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.387 0.613 39 H 0.399 0.601 40 H 0.138 0.862 41 H 0.174 0.826 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.070 0.930 45 H 0.111 0.889 46 H 0.098 0.902 47 H 0.065 0.935 48 H 0.090 0.910 49 H 0.093 0.907 50 H 0.004 0.996 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.309 -3.844 16.775 20.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.238 4.238 3 Si 0.792 3.208 4 H -0.187 1.187 5 H -0.224 1.224 6 H -0.218 1.218 7 C -0.390 4.390 8 H 0.086 0.914 9 N -0.327 5.327 10 C 0.016 3.984 11 C -0.154 4.154 12 C -0.154 4.154 13 C 0.073 3.927 14 C -0.004 4.004 15 O -0.384 6.384 16 N -0.332 5.332 17 C 0.378 3.622 18 O -0.474 6.474 19 C -0.265 4.265 20 C -0.195 4.195 21 C -0.089 4.089 22 N -0.112 5.112 23 C -0.085 4.085 24 C -0.031 4.031 25 C -0.166 4.166 26 C -0.159 4.159 27 C -0.088 4.088 28 C 0.067 3.933 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.235 0.765 39 H 0.233 0.767 40 H 0.156 0.844 41 H 0.191 0.809 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.089 0.911 45 H 0.130 0.870 46 H 0.117 0.883 47 H 0.084 0.916 48 H 0.108 0.892 49 H 0.112 0.888 50 H 0.022 0.978 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.616 -3.968 16.641 20.679 hybrid contribution -0.741 1.082 -0.528 1.414 sum 10.876 -2.885 16.114 19.653 Atomic orbital electron populations 1.70133 1.06660 1.25631 1.55159 1.25831 0.95972 1.01249 1.00769 0.85261 0.78777 0.80122 0.76601 1.18740 1.22386 1.21776 1.19475 0.91326 0.84784 1.43450 0.91450 1.44215 1.31909 1.03808 1.52723 1.21073 0.97440 0.86462 0.93426 1.21779 0.96789 0.99100 0.97733 1.21707 0.98532 0.96079 0.99036 1.21022 0.85082 0.96402 0.90228 1.22481 0.96361 0.86705 0.94879 1.86522 1.49993 1.36794 1.65047 1.45580 1.34098 1.27309 1.26234 1.17668 0.81396 0.83067 0.80022 1.90581 1.56597 1.24113 1.76135 1.20532 1.05006 0.99483 1.01462 1.21568 1.00574 1.01064 0.96341 1.20770 1.01831 0.88371 0.97914 1.44155 1.30249 1.17659 1.19153 1.21933 0.93918 0.99138 0.93486 1.22472 0.92150 0.88782 0.99684 1.21874 1.02953 0.98878 0.92911 1.21659 0.96704 0.93599 1.03901 1.20515 0.95445 1.01542 0.91314 1.20643 0.87598 0.96725 0.88304 0.94219 0.92589 0.96586 0.93496 0.90553 0.91306 0.91495 0.92603 0.92841 0.76519 0.76679 0.84385 0.80919 0.88365 0.88731 0.91077 0.87025 0.88324 0.91575 0.89165 0.88842 0.97757 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.98 11.04 21.65 0.24 -53.74 16 2 C -0.04 -2.28 5.03 84.86 0.43 -1.85 16 3 Si 0.96 43.31 29.57 68.60 2.03 45.34 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 5 H -0.30 -13.58 7.11 99.48 0.71 -12.88 16 6 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 7 C -0.26 -13.75 9.59 84.03 0.81 -12.94 16 8 H 0.07 3.47 7.86 -2.91 -0.02 3.44 16 9 N -0.60 -29.76 2.85 -699.09 -2.00 -31.76 16 10 C 0.14 5.98 6.52 86.37 0.56 6.54 16 11 C -0.11 -4.30 5.93 30.68 0.18 -4.12 16 12 C -0.12 -4.42 4.52 30.62 0.14 -4.29 16 13 C 0.16 6.68 0.45 3.68 0.00 6.68 16 14 C 0.07 2.88 5.59 71.98 0.40 3.28 16 15 O -0.58 -22.12 13.08 -148.98 -1.95 -24.07 16 16 N -0.68 -27.88 3.94 -425.96 -1.68 -29.55 16 17 C 0.59 23.80 7.22 86.61 0.63 24.42 16 18 O -0.59 -26.18 13.28 -4.14 -0.06 -26.23 16 19 C -0.25 -8.99 6.29 -19.02 -0.12 -9.11 16 20 C -0.17 -5.33 10.88 23.54 0.26 -5.08 16 21 C 0.02 0.48 6.53 40.91 0.27 0.75 16 22 N -0.44 -10.29 3.11 -507.85 -1.58 -11.87 16 23 C 0.05 1.54 10.90 83.93 0.91 2.46 16 24 C 0.09 1.31 6.89 86.32 0.59 1.91 16 25 C -0.13 -1.26 5.91 30.68 0.18 -1.08 16 26 C -0.12 -1.21 5.97 30.79 0.18 -1.03 16 27 C -0.05 -0.75 6.26 30.12 0.19 -0.56 16 28 C 0.19 9.46 3.82 86.36 0.33 9.79 16 29 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 30 H 0.06 2.29 7.93 -2.39 -0.02 2.27 16 31 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 1.86 7.53 -2.39 -0.02 1.84 16 33 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.07 2.74 6.26 -2.39 -0.01 2.72 16 35 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.06 2.20 6.29 -2.39 -0.02 2.18 16 37 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 38 H 0.39 10.71 9.12 -74.06 -0.68 10.04 16 39 H 0.40 16.82 7.38 -92.71 -0.68 16.13 16 40 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 41 H 0.17 4.90 7.46 -2.91 -0.02 4.88 16 42 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.07 0.78 8.11 -2.38 -0.02 0.76 16 45 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.07 0.73 8.12 -2.39 -0.02 0.71 16 48 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 49 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.00 0.23 8.14 -2.39 -0.02 0.22 16 51 H 0.07 4.01 5.91 -2.39 -0.01 3.99 16 Total: -1.00 -72.20 394.37 0.55 -71.65 By element: Atomic # 1 Polarization: 44.86 SS G_CDS: -0.41 Total: 44.45 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 5.94 Total: 15.78 kcal Atomic # 7 Polarization: -121.91 SS G_CDS: -5.01 Total: -126.92 kcal Atomic # 8 Polarization: -48.30 SS G_CDS: -2.00 Total: -50.30 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -72.20 0.55 -71.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325874008.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.796 kcal (2) G-P(sol) polarization free energy of solvation -72.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds