Wall clock time and date at job start Wed Apr 1 2020 04:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86806 * 120.00130 * 2 1 4 4 H 1.48498 * 109.46917 * 240.00367 * 3 2 1 5 5 H 1.48495 * 109.46832 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46908 * 120.00538 * 3 2 1 7 7 C 1.38821 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99821 * 196.75388 * 7 2 1 9 9 N 1.36936 * 119.99681 * 16.74684 * 7 2 1 10 10 C 1.47163 * 121.05927 * 205.75783 * 9 7 2 11 11 C 1.53278 * 108.53232 * 231.14279 * 10 9 7 12 12 O 1.43084 * 109.23993 * 307.11516 * 11 10 9 13 13 C 1.42066 * 114.33605 * 61.15635 * 12 11 10 14 14 C 1.54489 * 110.38110 * 177.17513 * 13 12 11 15 15 C 1.55023 * 101.53372 * 276.05227 * 14 13 12 16 16 N 1.47478 * 104.90625 * 323.64556 * 15 14 13 17 17 C 1.34783 * 125.66274 * 203.97379 * 16 15 14 18 18 O 1.21281 * 119.99910 * 180.02562 * 17 16 15 19 19 C 1.50690 * 120.00020 * 0.03758 * 17 16 15 20 20 C 1.53001 * 109.47153 * 179.97438 * 19 17 16 21 21 C 1.53004 * 109.47059 * 179.97438 * 20 19 17 22 22 N 1.46507 * 109.46900 * 180.02562 * 21 20 19 23 23 C 1.36336 * 125.63408 * 269.69368 * 22 21 20 24 24 C 1.34859 * 108.21635 * 179.83217 * 23 22 21 25 25 C 1.40893 * 107.41367 * 0.42706 * 24 23 22 26 26 C 1.34851 * 107.41997 * 359.73475 * 25 24 23 27 27 C 1.47183 * 108.67300 * 24.00824 * 16 15 14 28 28 C 1.47314 * 121.05813 * 25.77702 * 9 7 2 29 29 H 0.97004 * 119.99987 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.62559 * 350.85606 * 10 9 7 31 31 H 1.08994 * 109.62640 * 111.23650 * 10 9 7 32 32 H 1.09001 * 109.50926 * 187.18146 * 11 10 9 33 33 H 1.09001 * 109.50767 * 67.04572 * 11 10 9 34 34 H 1.09004 * 111.01497 * 34.11875 * 14 13 12 35 35 H 1.08999 * 111.01466 * 157.98884 * 14 13 12 36 36 H 1.09004 * 110.35416 * 204.78765 * 15 14 13 37 37 H 1.08997 * 110.44044 * 82.55005 * 15 14 13 38 38 H 1.08996 * 109.47500 * 300.00333 * 19 17 16 39 39 H 1.09005 * 109.47116 * 60.00124 * 19 17 16 40 40 H 1.08996 * 109.47235 * 300.00552 * 20 19 17 41 41 H 1.08999 * 109.46798 * 60.00488 * 20 19 17 42 42 H 1.09004 * 109.47304 * 300.00268 * 21 20 19 43 43 H 1.08999 * 109.46869 * 60.00591 * 21 20 19 44 44 H 1.07996 * 125.89335 * 359.96452 * 23 22 21 45 45 H 1.07996 * 126.29077 * 180.16074 * 24 23 22 46 46 H 1.07997 * 126.28831 * 179.73697 * 25 24 23 47 47 H 1.07994 * 125.89268 * 179.97438 * 26 25 24 48 48 H 1.09006 * 109.90911 * 239.11811 * 27 16 15 49 49 H 1.08998 * 109.90926 * 117.85578 * 27 16 15 50 50 H 1.09001 * 109.67636 * 10.85432 * 28 9 7 51 51 H 1.08996 * 109.71061 * 250.31649 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0558 -1.2221 0.2691 9 7 1.3691 -2.3628 -0.3428 10 6 1.8393 -3.6653 0.1553 11 6 1.9924 -4.6164 -1.0369 12 8 0.7713 -4.6384 -1.7823 13 6 0.3935 -3.3806 -2.3242 14 6 -0.8938 -3.5225 -3.1665 15 6 -0.3221 -3.9862 -4.5308 16 7 0.9512 -3.2566 -4.6762 17 6 1.5675 -2.9762 -5.8417 18 8 2.6166 -2.3676 -5.8418 19 6 0.9530 -3.4186 -7.1445 20 6 1.8459 -2.9768 -8.3056 21 6 1.2222 -3.4266 -9.6284 22 7 2.0776 -3.0040 -10.7402 23 6 1.9824 -1.8206 -11.4104 24 6 2.9397 -1.7955 -12.3599 25 6 3.6456 -3.0122 -12.2791 26 6 3.0966 -3.7318 -11.2795 27 6 1.4377 -2.8861 -3.3374 28 6 0.1869 -2.3473 -1.2216 29 1 -0.4850 0.8401 0.0004 30 1 2.8022 -3.5417 0.6511 31 1 1.1140 -4.0711 0.8604 32 1 2.2165 -5.6200 -0.6754 33 1 2.8036 -4.2698 -1.6771 34 1 -1.5566 -4.2775 -2.7434 35 1 -1.4057 -2.5650 -3.2623 36 1 -1.0052 -3.7214 -5.3379 37 1 -0.1442 -5.0616 -4.5232 38 1 0.8581 -4.5044 -7.1513 39 1 -0.0332 -2.9671 -7.2528 40 1 1.9404 -1.8910 -8.2986 41 1 2.8322 -3.4280 -8.1975 42 1 1.1282 -4.5125 -9.6351 43 1 0.2358 -2.9758 -9.7368 44 1 1.2655 -1.0373 -11.2134 45 1 3.1276 -0.9925 -13.0572 46 1 4.4742 -3.3131 -12.9031 47 1 3.4098 -4.7152 -10.9614 48 1 1.5401 -1.8032 -3.2662 49 1 2.3975 -3.3657 -3.1454 50 1 0.0709 -1.3575 -1.6633 51 1 -0.7031 -2.5987 -0.6450 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330170082.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:41 Heat of formation + Delta-G solvation = 3.301390 kcal Electronic energy + Delta-G solvation = -31026.333639 eV Core-core repulsion = 26927.630018 eV Total energy + Delta-G solvation = -4098.703621 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.26494 -40.29631 -38.81414 -36.23976 -35.14432 -34.51349 -32.02376 -31.39138 -31.14427 -29.14316 -28.92021 -27.95560 -26.89416 -25.40894 -23.40737 -23.29872 -22.26041 -21.11702 -20.61907 -20.13403 -19.29819 -18.72415 -17.72681 -17.02940 -16.82790 -16.50554 -15.95802 -15.18305 -15.03429 -14.88527 -14.62729 -14.39856 -14.22487 -14.03739 -13.58293 -13.52774 -13.47601 -13.17273 -12.90219 -12.74555 -12.55676 -12.31155 -12.22051 -12.20569 -12.01279 -11.87470 -11.76676 -11.46677 -11.19405 -11.11023 -11.07170 -10.86239 -10.77633 -10.50935 -10.32579 -9.96136 -9.75376 -9.60249 -9.11790 -8.76858 -8.58368 -8.44232 -8.30674 -6.80408 -5.88877 -3.31011 2.11947 2.72051 2.72718 2.92507 3.13733 3.34796 3.40385 3.43439 4.14018 4.34684 4.35244 4.42126 4.61089 4.75443 4.82524 4.87299 4.90425 5.01306 5.06536 5.08497 5.19689 5.29302 5.31503 5.35790 5.41793 5.48842 5.51243 5.60680 5.69999 5.76782 5.79630 5.94961 5.97909 6.03238 6.12718 6.13966 6.17092 6.18427 6.25611 6.42409 6.51343 6.56876 6.72939 6.84542 6.99117 7.08252 7.22265 7.36252 7.67006 7.68448 7.83376 8.27350 8.27811 9.06636 9.69548 10.25973 11.19700 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.002370 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.418244 B =11812.355331 C =12989.600871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.253 4.253 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.110 3.890 11 C 0.044 3.956 12 O -0.376 6.376 13 C 0.085 3.915 14 C -0.118 4.118 15 C 0.102 3.898 16 N -0.615 5.615 17 C 0.522 3.478 18 O -0.542 6.542 19 C -0.132 4.132 20 C -0.120 4.120 21 C 0.105 3.895 22 N -0.446 5.446 23 C -0.015 4.015 24 C -0.205 4.205 25 C -0.205 4.205 26 C -0.016 4.016 27 C 0.097 3.903 28 C 0.163 3.837 29 H 0.256 0.744 30 H 0.063 0.937 31 H 0.027 0.973 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.159 0.841 45 H 0.133 0.867 46 H 0.133 0.867 47 H 0.159 0.841 48 H 0.083 0.917 49 H 0.069 0.931 50 H 0.097 0.903 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.606 -10.636 -18.073 21.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.382 4.382 8 H 0.086 0.914 9 N -0.319 5.319 10 C -0.017 4.017 11 C -0.034 4.034 12 O -0.295 6.295 13 C 0.043 3.957 14 C -0.156 4.156 15 C -0.021 4.021 16 N -0.349 5.349 17 C 0.311 3.689 18 O -0.419 6.419 19 C -0.173 4.173 20 C -0.159 4.159 21 C -0.017 4.017 22 N -0.122 5.122 23 C -0.145 4.145 24 C -0.230 4.230 25 C -0.230 4.230 26 C -0.145 4.145 27 C -0.025 4.025 28 C 0.037 3.963 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.102 0.898 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.177 0.823 45 H 0.151 0.849 46 H 0.151 0.849 47 H 0.176 0.824 48 H 0.101 0.899 49 H 0.087 0.913 50 H 0.115 0.885 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -2.430 -10.399 -17.854 20.804 hybrid contribution 0.577 1.051 0.248 1.224 sum -1.853 -9.349 -17.606 20.020 Atomic orbital electron populations 1.69989 1.05212 1.25809 1.53903 1.25007 0.95358 0.98415 1.00714 0.86363 0.79002 0.83134 0.78324 1.20816 1.21511 1.20773 1.19142 0.92586 0.84400 1.42101 0.91360 1.44106 1.32814 1.01249 1.53686 1.21583 0.98729 0.87518 0.93827 1.23104 0.86415 0.99864 0.94019 1.87653 1.41608 1.30124 1.70116 1.22691 0.92446 0.86632 0.93901 1.22705 0.96670 1.03073 0.93138 1.22372 0.84828 0.96548 0.98319 1.48670 1.23909 1.56025 1.06333 1.20165 0.84753 0.79719 0.84297 1.90735 1.23009 1.41160 1.87004 1.21536 1.00555 1.02995 0.92188 1.21714 0.99712 1.03324 0.91123 1.21906 0.93631 1.01288 0.84872 1.44146 1.26650 1.14905 1.26466 1.21848 1.04163 0.90409 0.98044 1.20900 0.99723 0.99621 1.02749 1.20894 1.03775 0.96255 1.02053 1.21830 0.93977 0.99177 0.99562 1.22513 0.98245 1.01683 0.80049 1.21250 0.89402 0.96872 0.88806 0.93433 0.91876 0.95466 0.89794 0.93485 0.89008 0.89021 0.90914 0.91103 0.88789 0.88705 0.90262 0.90358 0.89225 0.89173 0.82348 0.84933 0.84948 0.82392 0.89907 0.91262 0.88498 0.94855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.37 11.12 55.49 0.62 -24.75 16 2 C 0.00 0.10 4.96 -17.43 -0.09 0.01 16 3 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.25 -6.77 9.66 -15.06 -0.15 -6.92 16 8 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 9 N -0.59 -14.41 2.97 -172.17 -0.51 -14.92 16 10 C 0.11 2.24 6.72 -3.54 -0.02 2.21 16 11 C 0.04 0.77 6.75 37.30 0.25 1.02 16 12 O -0.38 -6.84 10.26 -35.23 -0.36 -7.20 16 13 C 0.09 1.55 0.81 -89.74 -0.07 1.48 16 14 C -0.12 -1.64 6.21 -24.88 -0.15 -1.80 16 15 C 0.10 1.20 6.69 -2.44 -0.02 1.18 16 16 N -0.62 -9.43 3.33 -170.68 -0.57 -10.00 16 17 C 0.52 7.91 7.85 -10.99 -0.09 7.82 16 18 O -0.54 -10.68 16.31 5.56 0.09 -10.58 16 19 C -0.13 -1.22 4.71 -27.89 -0.13 -1.35 16 20 C -0.12 -1.16 4.83 -26.73 -0.13 -1.29 16 21 C 0.10 0.75 6.09 -4.04 -0.02 0.72 16 22 N -0.45 -4.29 2.75 -117.12 -0.32 -4.61 16 23 C -0.01 -0.15 11.43 -16.75 -0.19 -0.34 16 24 C -0.21 -2.16 10.86 -39.78 -0.43 -2.59 16 25 C -0.21 -2.14 10.86 -39.78 -0.43 -2.57 16 26 C -0.02 -0.15 11.43 -16.75 -0.19 -0.35 16 27 C 0.10 1.83 5.96 -3.32 -0.02 1.81 16 28 C 0.16 3.68 3.98 -3.84 -0.02 3.66 16 29 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.06 1.23 7.96 -51.93 -0.41 0.82 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.05 0.85 6.22 -51.93 -0.32 0.53 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.27 8.01 -51.93 -0.42 0.85 16 36 H 0.07 0.62 7.48 -51.93 -0.39 0.23 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.68 7.85 -51.93 -0.41 0.27 16 40 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 41 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 45 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 46 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 47 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 48 H 0.08 1.82 7.61 -51.93 -0.40 1.42 16 49 H 0.07 1.40 6.00 -51.93 -0.31 1.09 16 50 H 0.10 2.44 5.90 -51.93 -0.31 2.13 16 51 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 404.26 15.07 6.09 6.09 Total: -1.00 -33.39 404.26 -10.32 -43.71 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -8.43 Total: 2.98 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -1.90 Total: 2.71 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.78 Total: -54.28 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.27 Total: -17.78 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.39 -10.32 -43.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330170082.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.010 kcal (2) G-P(sol) polarization free energy of solvation -33.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds