Wall clock time and date at job start Wed Apr 1 2020 04:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00191 * 2 1 4 4 H 1.48503 * 109.46555 * 269.99912 * 3 2 1 5 5 H 1.48500 * 109.47101 * 29.99925 * 3 2 1 6 6 H 1.48497 * 109.47033 * 150.00250 * 3 2 1 7 7 C 1.38816 * 119.99683 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99542 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00100 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99654 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46866 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47497 * 304.99717 * 11 10 9 13 13 C 1.53002 * 109.47415 * 65.00069 * 11 10 9 14 14 C 1.53000 * 109.47233 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47060 * 299.99657 * 14 13 11 16 16 C 1.52999 * 109.47317 * 59.99960 * 15 14 13 17 17 C 1.52997 * 109.47232 * 184.99942 * 11 10 9 18 18 H 1.09001 * 109.47289 * 60.00075 * 17 11 10 19 19 N 1.46496 * 109.47294 * 299.99951 * 17 11 10 20 20 C 1.34774 * 120.00256 * 154.99900 * 19 17 11 21 21 O 1.21615 * 119.99928 * 0.02562 * 20 19 17 22 22 C 1.47426 * 120.00057 * 180.02562 * 20 19 17 23 23 C 1.36085 * 126.44863 * 179.68639 * 22 20 19 24 24 O 1.34253 * 106.95073 * 179.89979 * 23 22 20 25 25 C 1.34049 * 108.22844 * 0.36749 * 24 23 22 26 26 C 1.50701 * 125.38416 * 179.80489 * 25 24 23 27 27 C 1.53779 * 113.60957 * 37.45342 * 26 25 24 28 28 C 1.53779 * 87.07944 * 220.02156 * 27 26 25 29 29 C 1.53780 * 113.61098 * 299.95847 * 26 25 24 30 30 N 1.29943 * 109.23939 * 359.76661 * 25 24 23 31 31 H 0.96996 * 119.99982 * 359.97438 * 1 2 3 32 32 H 0.96998 * 120.00328 * 0.02562 * 9 7 2 33 33 H 1.09002 * 109.47101 * 60.00421 * 10 9 7 34 34 H 1.09001 * 109.47363 * 299.99662 * 10 9 7 35 35 H 1.08992 * 109.47063 * 59.99950 * 13 11 10 36 36 H 1.09004 * 109.46733 * 299.99664 * 13 11 10 37 37 H 1.09002 * 109.47398 * 59.99826 * 14 13 11 38 38 H 1.09001 * 109.47194 * 180.02562 * 14 13 11 39 39 H 1.08996 * 109.47853 * 180.02562 * 15 14 13 40 40 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 41 41 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 42 42 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 43 43 H 0.97001 * 119.99753 * 334.99414 * 19 17 11 44 44 H 1.08005 * 126.52681 * 0.04098 * 23 22 20 45 45 H 1.08993 * 112.85105 * 168.75732 * 26 25 24 46 46 H 1.09002 * 113.61972 * 334.56942 * 27 26 25 47 47 H 1.09004 * 113.61718 * 105.47604 * 27 26 25 48 48 H 1.09002 * 113.61864 * 270.88727 * 28 27 26 49 49 H 1.09001 * 113.69349 * 139.99687 * 28 27 26 50 50 H 1.08997 * 113.61409 * 254.52802 * 29 26 25 51 51 H 1.09005 * 113.61733 * 25.43008 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0027 11 6 1.0638 -4.8197 0.0031 12 1 0.3793 -4.7123 0.8446 13 6 0.2695 -4.8121 -1.3045 14 6 -0.7252 -5.9746 -1.3038 15 6 0.0350 -7.2962 -1.1767 16 6 0.8294 -7.3039 0.1309 17 6 1.8245 -6.1411 0.1300 18 1 2.3903 -6.1466 1.0616 19 7 2.7444 -6.2855 -1.0009 20 6 3.8437 -7.0560 -0.8813 21 8 4.0717 -7.6318 0.1654 22 6 4.7697 -7.2009 -2.0193 23 6 5.9146 -7.9362 -2.0414 24 8 6.4476 -7.7939 -3.2654 25 6 5.6524 -6.9828 -3.9772 26 6 5.8905 -6.5592 -5.4037 27 6 6.4820 -7.6713 -6.2859 28 6 7.3686 -6.5873 -6.9214 29 6 7.2129 -5.8015 -5.6087 30 7 4.6434 -6.6200 -3.2432 31 1 -0.4850 0.8400 0.0004 32 1 0.3555 -2.3881 0.0016 33 1 2.6846 -3.7138 0.8928 34 1 2.6847 -3.7154 -0.8872 35 1 0.9539 -4.9196 -2.1459 36 1 -0.2726 -3.8707 -1.3949 37 1 -1.4097 -5.8668 -0.4624 38 1 -1.2908 -5.9695 -2.2356 39 1 -0.6734 -8.1246 -1.1766 40 1 0.7195 -7.4041 -2.0181 41 1 1.3714 -8.2453 0.2213 42 1 0.1450 -7.1961 0.9724 43 1 2.5622 -5.8267 -1.8359 44 1 6.3167 -8.5242 -1.2296 45 1 5.0284 -6.0607 -5.8468 46 1 7.0420 -8.4209 -5.7267 47 1 5.7626 -8.1084 -6.9785 48 1 6.9108 -6.0971 -7.7806 49 1 8.3898 -6.9151 -7.1156 50 1 7.0836 -4.7291 -5.7545 51 1 7.9727 -6.0399 -4.8644 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483442672.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:03 Heat of formation + Delta-G solvation = -1.891422 kcal Electronic energy + Delta-G solvation = -31048.475137 eV Core-core repulsion = 26949.546339 eV Total energy + Delta-G solvation = -4098.928798 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.65317 -40.17388 -39.03779 -38.06164 -35.05041 -34.61143 -33.51254 -31.87653 -30.99465 -29.80264 -29.35347 -26.50653 -26.11629 -25.31882 -24.33242 -22.94336 -22.22572 -21.84547 -21.15652 -20.53105 -19.67609 -18.85969 -18.33453 -17.16995 -17.00379 -16.79325 -16.05544 -15.75240 -15.46056 -15.27986 -14.79201 -14.59232 -14.20120 -13.92890 -13.77492 -13.56776 -13.25516 -13.22313 -13.02400 -13.00031 -12.85192 -12.66225 -12.07953 -11.92730 -11.64800 -11.49830 -11.41569 -11.35905 -11.00039 -10.95026 -10.90561 -10.86371 -10.84960 -10.68017 -10.31555 -10.17453 -10.09920 -9.94089 -9.81270 -9.58396 -9.20250 -8.87460 -8.78158 -6.87441 -5.73344 -3.01133 0.94211 1.82937 2.32047 3.14052 3.29647 3.45643 3.50827 3.52624 3.62355 4.06117 4.15541 4.37741 4.42736 4.60371 4.64615 4.74383 4.89860 4.94329 4.98722 5.16067 5.22406 5.26303 5.30411 5.36800 5.38865 5.44240 5.46951 5.52464 5.60146 5.60796 5.65236 5.67649 5.72155 5.80628 5.85881 5.87952 5.95472 6.09866 6.18670 6.20420 6.29449 6.32535 6.42926 6.55558 6.61685 6.73561 6.85866 6.93747 7.26604 7.65673 7.73956 8.22510 8.45983 9.57186 10.15259 10.50512 11.49666 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007918 B = 0.003103 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3535.368442 B = 9022.755629 C =11225.564791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.236 4.236 8 H 0.068 0.932 9 N -0.730 5.730 10 C 0.159 3.841 11 C -0.101 4.101 12 H 0.087 0.913 13 C -0.111 4.111 14 C -0.120 4.120 15 C -0.117 4.117 16 C -0.128 4.128 17 C 0.153 3.847 18 H 0.089 0.911 19 N -0.694 5.694 20 C 0.601 3.399 21 O -0.543 6.543 22 C -0.066 4.066 23 C 0.006 3.994 24 O -0.195 6.195 25 C 0.208 3.792 26 C -0.020 4.020 27 C -0.132 4.132 28 C -0.139 4.139 29 C -0.131 4.131 30 N -0.456 5.456 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.017 0.983 34 H 0.019 0.981 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.410 0.590 44 H 0.230 0.770 45 H 0.134 0.866 46 H 0.089 0.911 47 H 0.079 0.921 48 H 0.088 0.912 49 H 0.075 0.925 50 H 0.082 0.918 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.130 -20.295 -11.891 25.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.086 0.914 9 N -0.375 5.375 10 C 0.032 3.968 11 C -0.120 4.120 12 H 0.105 0.895 13 C -0.149 4.149 14 C -0.157 4.157 15 C -0.154 4.154 16 C -0.166 4.166 17 C 0.049 3.951 18 H 0.108 0.892 19 N -0.345 5.345 20 C 0.386 3.614 21 O -0.421 6.421 22 C -0.187 4.187 23 C -0.068 4.068 24 O -0.081 6.081 25 C -0.001 4.001 26 C -0.039 4.039 27 C -0.170 4.170 28 C -0.177 4.177 29 C -0.169 4.169 30 N -0.185 5.185 31 H 0.064 0.936 32 H 0.218 0.782 33 H 0.035 0.965 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.248 0.752 44 H 0.246 0.754 45 H 0.152 0.848 46 H 0.107 0.893 47 H 0.097 0.903 48 H 0.106 0.894 49 H 0.094 0.906 50 H 0.100 0.900 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.914 -20.161 -11.324 25.159 hybrid contribution 0.559 0.775 0.017 0.956 sum 10.472 -19.386 -11.307 24.765 Atomic orbital electron populations 1.69654 1.05051 1.25553 1.58060 1.24714 0.95512 0.97587 1.03201 0.86204 0.78677 0.83944 0.77482 1.21772 1.21795 1.20825 1.19226 0.90998 0.84229 1.42287 0.91361 1.42352 1.05801 0.99879 1.89421 1.20649 0.93000 0.85328 0.97861 1.21624 0.97814 0.93275 0.99305 0.89519 1.21538 0.97700 0.98970 0.96687 1.21578 0.98026 0.94494 1.01639 1.21499 0.98654 0.97543 0.97722 1.21914 0.97891 0.98425 0.98390 1.21053 0.89722 0.94808 0.89556 0.89247 1.45932 1.22900 1.48110 1.17533 1.16734 0.80347 0.79358 0.85001 1.90803 1.75127 1.48163 1.28052 1.21884 0.98974 1.03411 0.94382 1.25259 0.94278 1.01247 0.85994 1.84328 1.47657 1.53921 1.22233 1.26075 0.85979 0.91444 0.96572 1.21336 1.00601 0.99121 0.82887 1.23022 0.99296 0.96452 0.98259 1.22820 1.00723 0.97019 0.97103 1.23029 0.95369 1.00355 0.98172 1.70808 1.22991 1.22641 1.02033 0.93584 0.78211 0.96497 0.96308 0.92553 0.90231 0.91892 0.92266 0.92481 0.92274 0.91760 0.90849 0.75231 0.75365 0.84796 0.89273 0.90267 0.89389 0.90625 0.89965 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.73 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.61 5.33 -59.91 -0.32 -18.93 16 10 C 0.16 3.30 5.42 -4.04 -0.02 3.27 16 11 C -0.10 -1.64 2.02 -90.62 -0.18 -1.82 16 12 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 13 C -0.11 -1.71 4.90 -26.73 -0.13 -1.84 16 14 C -0.12 -1.52 5.92 -26.73 -0.16 -1.67 16 15 C -0.12 -1.38 5.77 -26.73 -0.15 -1.53 16 16 C -0.13 -1.61 5.61 -26.71 -0.15 -1.76 16 17 C 0.15 2.24 2.23 -67.91 -0.15 2.09 16 18 H 0.09 1.42 7.58 -51.93 -0.39 1.03 16 19 N -0.69 -10.14 3.62 -54.86 -0.20 -10.34 16 20 C 0.60 9.15 7.78 -12.52 -0.10 9.06 16 21 O -0.54 -9.29 16.55 5.26 0.09 -9.20 16 22 C -0.07 -0.90 6.99 -83.02 -0.58 -1.48 16 23 C 0.01 0.07 11.94 29.96 0.36 0.42 16 24 O -0.20 -2.04 10.39 6.52 0.07 -1.98 16 25 C 0.21 2.28 7.33 -13.08 -0.10 2.18 16 26 C -0.02 -0.16 4.29 -90.96 -0.39 -0.55 16 27 C -0.13 -0.76 7.62 -25.92 -0.20 -0.96 16 28 C -0.14 -0.68 8.08 -25.92 -0.21 -0.89 16 29 C -0.13 -0.86 7.63 -25.92 -0.20 -1.06 16 30 N -0.46 -6.11 11.06 -7.65 -0.08 -6.19 16 31 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.38 10.15 6.85 -40.82 -0.28 9.87 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.02 0.40 7.61 -51.93 -0.40 0.01 16 35 H 0.06 0.86 6.50 -51.93 -0.34 0.52 16 36 H 0.08 1.42 7.18 -51.93 -0.37 1.05 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.73 7.61 -51.93 -0.39 0.33 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.41 6.02 6.40 -40.82 -0.26 5.76 16 44 H 0.23 1.79 8.06 -52.48 -0.42 1.37 16 45 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.09 0.54 7.81 -51.93 -0.41 0.13 16 47 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 50 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.09 0.61 8.09 -51.93 -0.42 0.19 16 LS Contribution 407.45 15.07 6.14 6.14 Total: -1.00 -33.19 407.45 -9.52 -42.71 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -8.30 Total: 11.67 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -2.61 Total: -3.95 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: 0.12 Total: -63.13 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.15 Total: -11.18 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.19 -9.52 -42.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483442672.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.814 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds