Wall clock time and date at job start Wed Apr 1 2020 04:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00191 * 2 1 4 4 H 1.48503 * 109.46555 * 269.99912 * 3 2 1 5 5 H 1.48500 * 109.47101 * 29.99925 * 3 2 1 6 6 H 1.48497 * 109.47033 * 150.00250 * 3 2 1 7 7 C 1.38816 * 119.99683 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99542 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00100 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99654 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46866 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47497 * 304.99717 * 11 10 9 13 13 C 1.53002 * 109.47415 * 65.00069 * 11 10 9 14 14 C 1.53000 * 109.47233 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47060 * 299.99657 * 14 13 11 16 16 C 1.52999 * 109.47317 * 59.99960 * 15 14 13 17 17 C 1.52997 * 109.47232 * 184.99942 * 11 10 9 18 18 H 1.09001 * 109.47289 * 60.00075 * 17 11 10 19 19 N 1.46496 * 109.47294 * 299.99951 * 17 11 10 20 20 C 1.34774 * 120.00256 * 154.99900 * 19 17 11 21 21 O 1.21615 * 119.99928 * 0.02562 * 20 19 17 22 22 C 1.47426 * 120.00057 * 180.02562 * 20 19 17 23 23 C 1.36085 * 126.44863 * 179.68639 * 22 20 19 24 24 O 1.34253 * 106.95073 * 179.89979 * 23 22 20 25 25 C 1.34049 * 108.22844 * 0.36749 * 24 23 22 26 26 C 1.50701 * 125.38416 * 179.80489 * 25 24 23 27 27 C 1.53779 * 113.60957 * 37.45342 * 26 25 24 28 28 C 1.53779 * 87.07944 * 220.02156 * 27 26 25 29 29 C 1.53780 * 113.61098 * 299.95847 * 26 25 24 30 30 N 1.29943 * 109.23939 * 359.76661 * 25 24 23 31 31 H 0.96996 * 119.99982 * 359.97438 * 1 2 3 32 32 H 0.96998 * 120.00328 * 0.02562 * 9 7 2 33 33 H 1.09002 * 109.47101 * 60.00421 * 10 9 7 34 34 H 1.09001 * 109.47363 * 299.99662 * 10 9 7 35 35 H 1.08992 * 109.47063 * 59.99950 * 13 11 10 36 36 H 1.09004 * 109.46733 * 299.99664 * 13 11 10 37 37 H 1.09002 * 109.47398 * 59.99826 * 14 13 11 38 38 H 1.09001 * 109.47194 * 180.02562 * 14 13 11 39 39 H 1.08996 * 109.47853 * 180.02562 * 15 14 13 40 40 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 41 41 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 42 42 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 43 43 H 0.97001 * 119.99753 * 334.99414 * 19 17 11 44 44 H 1.08005 * 126.52681 * 0.04098 * 23 22 20 45 45 H 1.08993 * 112.85105 * 168.75732 * 26 25 24 46 46 H 1.09002 * 113.61972 * 334.56942 * 27 26 25 47 47 H 1.09004 * 113.61718 * 105.47604 * 27 26 25 48 48 H 1.09002 * 113.61864 * 270.88727 * 28 27 26 49 49 H 1.09001 * 113.69349 * 139.99687 * 28 27 26 50 50 H 1.08997 * 113.61409 * 254.52802 * 29 26 25 51 51 H 1.09005 * 113.61733 * 25.43008 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0027 11 6 1.0638 -4.8197 0.0031 12 1 0.3793 -4.7123 0.8446 13 6 0.2695 -4.8121 -1.3045 14 6 -0.7252 -5.9746 -1.3038 15 6 0.0350 -7.2962 -1.1767 16 6 0.8294 -7.3039 0.1309 17 6 1.8245 -6.1411 0.1300 18 1 2.3903 -6.1466 1.0616 19 7 2.7444 -6.2855 -1.0009 20 6 3.8437 -7.0560 -0.8813 21 8 4.0717 -7.6318 0.1654 22 6 4.7697 -7.2009 -2.0193 23 6 5.9146 -7.9362 -2.0414 24 8 6.4476 -7.7939 -3.2654 25 6 5.6524 -6.9828 -3.9772 26 6 5.8905 -6.5592 -5.4037 27 6 6.4820 -7.6713 -6.2859 28 6 7.3686 -6.5873 -6.9214 29 6 7.2129 -5.8015 -5.6087 30 7 4.6434 -6.6200 -3.2432 31 1 -0.4850 0.8400 0.0004 32 1 0.3555 -2.3881 0.0016 33 1 2.6846 -3.7138 0.8928 34 1 2.6847 -3.7154 -0.8872 35 1 0.9539 -4.9196 -2.1459 36 1 -0.2726 -3.8707 -1.3949 37 1 -1.4097 -5.8668 -0.4624 38 1 -1.2908 -5.9695 -2.2356 39 1 -0.6734 -8.1246 -1.1766 40 1 0.7195 -7.4041 -2.0181 41 1 1.3714 -8.2453 0.2213 42 1 0.1450 -7.1961 0.9724 43 1 2.5622 -5.8267 -1.8359 44 1 6.3167 -8.5242 -1.2296 45 1 5.0284 -6.0607 -5.8468 46 1 7.0420 -8.4209 -5.7267 47 1 5.7626 -8.1084 -6.9785 48 1 6.9108 -6.0971 -7.7806 49 1 8.3898 -6.9151 -7.1156 50 1 7.0836 -4.7291 -5.7545 51 1 7.9727 -6.0399 -4.8644 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483442672.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:02 Heat of formation + Delta-G solvation = -23.715215 kcal Electronic energy + Delta-G solvation = -31049.421488 eV Core-core repulsion = 26949.546339 eV Total energy + Delta-G solvation = -4099.875149 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.53703 -41.38675 -39.59852 -39.26793 -36.48783 -35.99639 -34.66595 -33.73703 -31.89364 -31.26890 -30.73813 -27.22080 -26.99163 -26.59392 -25.42295 -24.71842 -23.37360 -22.70837 -22.20687 -21.86676 -20.42811 -20.04825 -19.39082 -19.01854 -17.89766 -17.77619 -16.94960 -16.78032 -16.61969 -16.32523 -16.16156 -16.01528 -15.42813 -15.29338 -15.12925 -14.91488 -14.69607 -14.64553 -14.07512 -13.77015 -13.53603 -13.46118 -13.34604 -13.15978 -13.00443 -12.89923 -12.73993 -12.62715 -12.40310 -12.13984 -11.96203 -11.94170 -11.92665 -11.87206 -11.48408 -11.42961 -11.41364 -11.29538 -11.20897 -11.05097 -10.88430 -10.19410 -9.93374 -9.01310 -7.96911 -5.25493 0.02345 0.88272 1.45057 1.46744 1.49815 1.55360 2.04417 2.19238 2.53881 2.77835 3.35897 3.51152 3.53998 3.62991 3.67016 3.75715 3.79290 3.82283 3.91136 4.03722 4.05863 4.20598 4.38900 4.43934 4.44937 4.45969 4.54669 4.56010 4.62644 4.70966 4.71938 4.77915 4.85880 4.88655 4.96018 4.98691 5.04574 5.05213 5.10622 5.13206 5.14267 5.23893 5.27964 5.30723 5.40913 5.44734 5.48997 5.49820 5.56403 6.24988 6.27825 6.55521 7.04290 7.32214 8.06457 8.32658 9.26302 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007918 B = 0.003103 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3535.368442 B = 9022.755629 C =11225.564791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.070 4.070 3 Si 0.972 3.028 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.249 4.249 8 H 0.067 0.933 9 N -0.738 5.738 10 C 0.163 3.837 11 C -0.088 4.088 12 H 0.086 0.914 13 C -0.105 4.105 14 C -0.112 4.112 15 C -0.109 4.109 16 C -0.121 4.121 17 C 0.159 3.841 18 H 0.075 0.925 19 N -0.692 5.692 20 C 0.600 3.400 21 O -0.567 6.567 22 C -0.101 4.101 23 C 0.026 3.974 24 O -0.190 6.190 25 C 0.213 3.787 26 C -0.030 4.030 27 C -0.125 4.125 28 C -0.128 4.128 29 C -0.133 4.133 30 N -0.486 5.486 31 H 0.253 0.747 32 H 0.377 0.623 33 H 0.005 0.995 34 H 0.014 0.986 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.086 0.914 43 H 0.410 0.590 44 H 0.258 0.742 45 H 0.137 0.863 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.099 0.901 49 H 0.085 0.915 50 H 0.080 0.920 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.993 -21.503 -13.106 27.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.263 4.263 3 Si 0.801 3.199 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.199 1.199 7 C -0.380 4.380 8 H 0.085 0.915 9 N -0.381 5.381 10 C 0.036 3.964 11 C -0.107 4.107 12 H 0.104 0.896 13 C -0.143 4.143 14 C -0.150 4.150 15 C -0.147 4.147 16 C -0.159 4.159 17 C 0.054 3.946 18 H 0.093 0.907 19 N -0.343 5.343 20 C 0.386 3.614 21 O -0.448 6.448 22 C -0.220 4.220 23 C -0.048 4.048 24 O -0.076 6.076 25 C 0.003 3.997 26 C -0.049 4.049 27 C -0.164 4.164 28 C -0.165 4.165 29 C -0.172 4.172 30 N -0.215 5.215 31 H 0.061 0.939 32 H 0.210 0.790 33 H 0.023 0.977 34 H 0.032 0.968 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.104 0.896 43 H 0.247 0.753 44 H 0.274 0.726 45 H 0.155 0.845 46 H 0.106 0.894 47 H 0.108 0.892 48 H 0.117 0.883 49 H 0.104 0.896 50 H 0.099 0.901 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.792 -21.389 -12.548 27.045 hybrid contribution 0.359 1.135 0.376 1.248 sum 11.151 -20.254 -12.172 26.129 Atomic orbital electron populations 1.69800 1.06424 1.26140 1.59218 1.25518 0.96428 1.00874 1.03470 0.85170 0.77639 0.79593 0.77538 1.21186 1.21817 1.19872 1.19561 0.91223 0.85589 1.41673 0.91479 1.42489 1.05622 1.00766 1.89269 1.20706 0.93644 0.85273 0.96765 1.21464 0.96904 0.92345 0.99960 0.89610 1.21443 0.97933 0.99005 0.95889 1.21526 0.97358 0.93509 1.02597 1.21449 0.98718 0.97643 0.96858 1.21867 0.97499 0.97013 0.99540 1.20957 0.89933 0.94670 0.89041 0.90690 1.45918 1.22990 1.48046 1.17322 1.16950 0.80377 0.78838 0.85224 1.90776 1.75710 1.49218 1.29065 1.21786 1.00134 1.05665 0.94401 1.25784 0.92978 0.99662 0.86374 1.84368 1.47395 1.53727 1.22067 1.26749 0.85144 0.90446 0.97323 1.21666 1.01336 1.00571 0.81375 1.23016 0.99414 0.96084 0.97837 1.22800 1.01252 0.96026 0.96420 1.23058 0.94477 1.00420 0.99199 1.70768 1.24481 1.23858 1.02405 0.93867 0.79002 0.97666 0.96825 0.92692 0.93081 0.91335 0.91017 0.90250 0.92753 0.91891 0.89575 0.75307 0.72601 0.84516 0.89431 0.89193 0.88278 0.89616 0.90096 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.50 13.06 21.65 0.28 -59.22 16 2 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 3 Si 0.97 47.07 29.55 68.60 2.03 49.10 16 4 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 6 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 7 C -0.25 -14.41 9.99 84.03 0.84 -13.57 16 8 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 9 N -0.74 -38.66 5.33 -343.45 -1.83 -40.49 16 10 C 0.16 6.94 5.42 86.38 0.47 7.41 16 11 C -0.09 -2.89 2.02 -10.79 -0.02 -2.91 16 12 H 0.09 2.86 8.14 -2.39 -0.02 2.85 16 13 C -0.10 -3.23 4.90 30.60 0.15 -3.08 16 14 C -0.11 -2.68 5.92 30.59 0.18 -2.50 16 15 C -0.11 -2.36 5.77 30.59 0.18 -2.19 16 16 C -0.12 -2.89 5.61 30.61 0.17 -2.72 16 17 C 0.16 4.64 2.23 45.01 0.10 4.74 16 18 H 0.07 2.43 7.58 -2.39 -0.02 2.41 16 19 N -0.69 -20.50 3.62 -445.72 -1.61 -22.11 16 20 C 0.60 18.43 7.78 86.66 0.67 19.11 16 21 O -0.57 -19.48 16.55 -4.08 -0.07 -19.54 16 22 C -0.10 -2.73 6.99 40.41 0.28 -2.45 16 23 C 0.03 0.54 11.94 67.32 0.80 1.35 16 24 O -0.19 -3.74 10.39 0.42 0.00 -3.74 16 25 C 0.21 4.52 7.33 88.39 0.65 5.16 16 26 C -0.03 -0.44 4.29 -11.01 -0.05 -0.48 16 27 C -0.13 -1.20 7.62 31.12 0.24 -0.96 16 28 C -0.13 -0.97 8.08 31.12 0.25 -0.72 16 29 C -0.13 -1.59 7.63 31.12 0.24 -1.35 16 30 N -0.49 -13.03 11.06 -293.03 -3.24 -16.27 16 31 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 32 H 0.38 20.57 6.85 -92.71 -0.64 19.93 16 33 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.01 0.61 7.61 -2.39 -0.02 0.59 16 35 H 0.05 1.69 6.50 -2.39 -0.02 1.67 16 36 H 0.05 1.87 7.18 -2.39 -0.02 1.86 16 37 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.05 1.25 7.61 -2.39 -0.02 1.23 16 41 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.41 12.27 6.40 -92.71 -0.59 11.67 16 44 H 0.26 3.54 8.06 -2.91 -0.02 3.52 16 45 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.09 0.88 7.81 -2.39 -0.02 0.86 16 47 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 48 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 50 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.08 1.07 8.09 -2.38 -0.02 1.05 16 Total: -1.00 -71.79 407.45 0.90 -70.89 By element: Atomic # 1 Polarization: 40.47 SS G_CDS: -0.28 Total: 40.19 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 5.62 Total: 1.18 kcal Atomic # 7 Polarization: -131.68 SS G_CDS: -6.40 Total: -138.08 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.06 Total: -23.28 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -71.79 0.90 -70.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483442672.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.177 kcal (2) G-P(sol) polarization free energy of solvation -71.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds