Wall clock time and date at job start Wed Apr 1 2020 05:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46814 * 2 1 4 4 C 1.53113 * 109.46508 * 240.01665 * 2 1 3 5 5 C 1.53615 * 109.55793 * 169.94408 * 4 2 1 6 6 C 1.50593 * 108.24975 * 50.29321 * 5 4 2 7 7 O 1.33195 * 129.60468 * 162.69151 * 6 5 4 8 8 N 1.21424 * 111.56828 * 180.19500 * 7 6 5 9 9 C 1.31497 * 111.53168 * 359.96344 * 8 7 6 10 10 C 1.48327 * 127.15411 * 179.97438 * 9 8 7 11 11 O 1.21502 * 119.99525 * 180.02562 * 10 9 8 12 12 N 1.34770 * 120.00334 * 0.02562 * 10 9 8 13 13 C 1.47420 * 125.64905 * 355.25611 * 12 10 9 14 14 C 1.54913 * 104.83654 * 155.60483 * 13 12 10 15 15 C 1.55161 * 101.57960 * 37.00827 * 14 13 12 16 16 C 1.47025 * 125.64677 * 174.94141 * 12 10 9 17 17 H 1.08992 * 109.88642 * 300.74310 * 16 12 10 18 18 C 1.53001 * 109.88389 * 61.91070 * 16 12 10 19 19 N 1.46499 * 109.47215 * 185.36291 * 18 16 12 20 20 C 1.36941 * 119.99693 * 185.01543 * 19 18 16 21 21 H 1.07991 * 120.00318 * 359.97438 * 20 19 18 22 22 C 1.38807 * 119.99730 * 179.97438 * 20 19 18 23 23 N 1.31624 * 119.99946 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00199 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46892 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.47553 * 120.00026 * 24 22 20 27 27 H 1.48500 * 109.47241 * 240.00297 * 24 22 20 28 28 C 1.35382 * 123.76181 * 343.10124 * 6 5 4 29 29 C 1.50057 * 124.93743 * 359.70824 * 28 6 5 30 30 H 1.09005 * 109.47030 * 300.01508 * 1 2 3 31 31 H 1.08998 * 109.47028 * 60.01102 * 1 2 3 32 32 H 1.08997 * 109.47279 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47006 * 179.97438 * 3 2 1 34 34 H 1.09010 * 109.46896 * 299.98729 * 3 2 1 35 35 H 1.08997 * 109.47600 * 59.98617 * 3 2 1 36 36 H 1.08995 * 109.42895 * 290.21171 * 4 2 1 37 37 H 1.08999 * 109.42357 * 50.10499 * 4 2 1 38 38 H 1.09003 * 110.16664 * 290.34648 * 5 4 2 39 39 H 1.09007 * 109.28352 * 169.72387 * 5 4 2 40 40 H 1.09003 * 110.36815 * 274.44456 * 13 12 10 41 41 H 1.08997 * 110.36842 * 36.65122 * 13 12 10 42 42 H 1.09000 * 111.00568 * 155.08035 * 14 13 12 43 43 H 1.08993 * 110.99919 * 278.93792 * 14 13 12 44 44 H 1.08999 * 110.72052 * 82.86108 * 15 14 13 45 45 H 1.09000 * 110.72043 * 205.96040 * 15 14 13 46 46 H 1.09000 * 109.47060 * 305.36441 * 18 16 12 47 47 H 1.09004 * 109.46635 * 65.35895 * 18 16 12 48 48 H 0.96993 * 120.00174 * 5.01117 * 19 18 16 49 49 H 0.97007 * 119.99850 * 180.02562 * 23 22 20 50 50 H 1.09002 * 109.71554 * 103.76379 * 29 28 6 51 51 H 1.09008 * 109.71079 * 224.35305 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0402 -0.7214 -1.2504 5 6 3.5554 -0.5075 -1.3853 6 6 4.1988 -0.8461 -0.0665 7 8 5.4739 -1.1104 0.2132 8 7 5.6323 -1.3469 1.3936 9 6 4.4992 -1.2732 2.0568 10 6 4.2948 -1.4971 3.5087 11 8 3.1833 -1.3950 3.9886 12 7 5.3420 -1.8139 4.2957 13 6 6.7190 -2.0660 3.8334 14 6 7.6120 -1.7605 5.0618 15 6 6.7343 -2.2930 6.2252 16 6 5.3018 -1.9590 5.7582 17 1 4.9714 -1.0258 6.2144 18 6 4.3512 -3.0946 6.1426 19 7 4.2188 -3.1482 7.6006 20 6 3.4963 -4.1536 8.1859 21 1 3.0239 -4.9066 7.5727 22 6 3.3713 -4.2048 9.5674 23 7 3.9467 -3.2867 10.3147 24 14 2.3853 -5.5757 10.3659 25 1 1.8435 -6.4730 9.3140 26 1 3.2651 -6.3538 11.2745 27 1 1.2639 -4.9906 11.1439 28 6 3.5182 -0.9426 1.0998 29 6 2.0417 -0.7236 1.2539 30 1 -0.3633 0.5141 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9562 -0.8902 35 1 1.6764 1.9564 0.8898 36 1 1.8262 -1.7869 -1.1670 37 1 1.5394 -0.3189 -2.1309 38 1 3.7670 0.5307 -1.6415 39 1 3.9440 -1.1649 -2.1632 40 1 6.8330 -3.1070 3.5310 41 1 6.9689 -1.4020 3.0060 42 1 8.5553 -2.3035 5.0038 43 1 7.7853 -0.6890 5.1619 44 1 6.8607 -3.3693 6.3421 45 1 6.9705 -1.7751 7.1547 46 1 3.3732 -2.9169 5.6952 47 1 4.7505 -4.0414 5.7788 48 1 4.6428 -2.4718 8.1513 49 1 3.8597 -3.3227 11.2802 50 1 1.5363 -1.6839 1.3563 51 1 1.8508 -0.1119 2.1357 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483937406.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:25 Heat of formation + Delta-G solvation = 33.213425 kcal Electronic energy + Delta-G solvation = -31591.983221 eV Core-core repulsion = 27494.576683 eV Total energy + Delta-G solvation = -4097.406538 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.25344 -39.99865 -39.33167 -37.38990 -34.59118 -34.04180 -33.16531 -31.69864 -31.29870 -30.47424 -28.68936 -27.67918 -27.50569 -25.38540 -24.68942 -24.02081 -22.63929 -22.04081 -21.82050 -20.63926 -19.33296 -18.43473 -17.99163 -17.34223 -17.04941 -16.52888 -16.23487 -15.38229 -15.07464 -14.83778 -14.69696 -14.43104 -14.34654 -13.79099 -13.67995 -13.51055 -13.46735 -13.26161 -13.20813 -12.80727 -12.63350 -12.43109 -12.30549 -12.17808 -12.08501 -11.97803 -11.65157 -11.47867 -11.04331 -10.98990 -10.94676 -10.86746 -10.80647 -10.71288 -10.54572 -10.42387 -10.30971 -9.99738 -9.98853 -9.66302 -9.28856 -8.80492 -8.47861 -6.85543 -5.71346 -2.99362 0.99881 1.54468 2.63582 2.88617 3.22137 3.47329 3.52994 3.55476 3.82962 4.15418 4.24899 4.34995 4.57893 4.64652 4.66157 4.70210 4.72592 4.86887 4.94668 4.96643 5.07112 5.19999 5.23771 5.34309 5.39209 5.41415 5.43943 5.45266 5.52245 5.57052 5.60745 5.63157 5.67971 5.75269 5.76160 5.82873 5.85573 5.97282 5.99302 6.06092 6.07909 6.10213 6.11976 6.21028 6.44504 6.55336 6.82975 7.03401 7.55243 7.76648 7.83073 8.18682 8.47543 9.58605 10.15048 10.51026 11.51834 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013244 B = 0.002719 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.671225 B =10295.039438 C =11841.417667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.068 4.068 3 C -0.145 4.145 4 C -0.108 4.108 5 C -0.034 4.034 6 C -0.041 4.041 7 O 0.120 5.880 8 N -0.337 5.337 9 C -0.005 4.005 10 C 0.606 3.394 11 O -0.508 6.508 12 N -0.597 5.597 13 C 0.096 3.904 14 C -0.134 4.134 15 C -0.119 4.119 16 C 0.132 3.868 17 H 0.079 0.921 18 C 0.145 3.855 19 N -0.728 5.728 20 C -0.232 4.232 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.907 3.093 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.291 1.291 28 C -0.146 4.146 29 C -0.036 4.036 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.035 0.965 47 H 0.021 0.979 48 H 0.383 0.617 49 H 0.254 0.746 50 H 0.085 0.915 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.285 9.360 -28.053 29.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.068 4.068 3 C -0.203 4.203 4 C -0.146 4.146 5 C -0.072 4.072 6 C -0.105 4.105 7 O 0.049 5.951 8 N -0.041 5.041 9 C -0.163 4.163 10 C 0.391 3.609 11 O -0.381 6.381 12 N -0.331 5.331 13 C -0.027 4.027 14 C -0.172 4.172 15 C -0.157 4.157 16 C 0.029 3.971 17 H 0.097 0.903 18 C 0.017 3.983 19 N -0.373 5.373 20 C -0.364 4.364 21 H 0.088 0.912 22 C -0.211 4.211 23 N -0.584 5.584 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.151 4.151 29 C -0.073 4.073 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.053 0.947 47 H 0.039 0.961 48 H 0.217 0.783 49 H 0.064 0.936 50 H 0.103 0.897 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.749 8.994 -27.400 28.969 hybrid contribution -0.942 -0.487 0.771 1.311 sum 1.807 8.506 -26.629 28.013 Atomic orbital electron populations 1.21840 0.93552 1.02234 1.02176 1.20727 0.96104 0.95680 0.94320 1.21970 1.01256 0.94973 1.02064 1.21770 0.92883 1.01612 0.98288 1.20311 0.94490 1.03110 0.89325 1.24073 0.83494 1.04026 0.98921 1.84675 1.27055 1.62810 1.20530 1.74608 1.22455 1.17150 0.89870 1.23045 0.90095 1.06232 0.96897 1.16457 0.83987 0.78094 0.82378 1.90844 1.22663 1.51191 1.73402 1.48327 1.09024 1.67582 1.08155 1.22539 0.80693 1.01572 0.97889 1.22814 0.98206 1.01721 0.94497 1.22678 0.92186 1.02847 0.98034 1.21901 0.97087 1.00407 0.77674 0.90320 1.20979 0.96473 0.93754 0.87078 1.42199 1.62939 1.32666 0.99451 1.19257 1.23840 1.03351 0.89922 0.91223 1.24719 1.01319 0.98958 0.96104 1.69673 1.48832 1.35634 1.04241 0.86102 0.79434 0.81380 0.79235 1.20589 1.21919 1.21867 1.20614 0.98598 1.05304 0.90581 1.20120 0.87212 1.01690 0.98328 0.92083 0.92378 0.92298 0.92510 0.92372 0.92293 0.90870 0.90019 0.88541 0.89040 0.91359 0.89274 0.89855 0.90845 0.89812 0.89588 0.94689 0.96137 0.78329 0.93633 0.89674 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.45 37.16 0.31 -0.62 16 2 C -0.07 -0.50 0.77 -154.17 -0.12 -0.62 16 3 C -0.15 -1.03 7.73 37.16 0.29 -0.75 16 4 C -0.11 -0.60 4.84 -26.35 -0.13 -0.73 16 5 C -0.03 -0.19 5.64 -27.62 -0.16 -0.35 16 6 C -0.04 -0.40 6.64 -35.38 -0.23 -0.63 16 7 O 0.12 1.35 11.18 19.18 0.21 1.57 16 8 N -0.34 -4.49 9.27 33.29 0.31 -4.18 16 9 C 0.00 -0.07 7.01 -82.82 -0.58 -0.65 16 10 C 0.61 10.72 7.69 -12.11 -0.09 10.63 16 11 O -0.51 -10.46 14.89 5.36 0.08 -10.38 16 12 N -0.60 -9.98 3.06 -163.94 -0.50 -10.49 16 13 C 0.10 1.29 6.35 -2.53 -0.02 1.27 16 14 C -0.13 -1.62 7.09 -24.58 -0.17 -1.80 16 15 C -0.12 -1.86 6.24 -24.89 -0.16 -2.01 16 16 C 0.13 2.43 2.94 -66.95 -0.20 2.24 16 17 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 18 C 0.15 3.30 5.66 -4.04 -0.02 3.28 16 19 N -0.73 -19.45 5.42 -59.91 -0.32 -19.77 16 20 C -0.23 -6.82 9.99 -15.06 -0.15 -6.98 16 21 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 22 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 23 N -0.93 -28.90 13.06 55.49 0.72 -28.18 16 24 Si 0.91 23.16 29.55 -169.99 -5.02 18.14 16 25 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 27 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 28 C -0.15 -1.78 5.60 -104.92 -0.59 -2.36 16 29 C -0.04 -0.39 4.41 -27.91 -0.12 -0.52 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.44 5.65 -51.93 -0.29 0.14 16 34 H 0.06 0.32 8.14 -51.92 -0.42 -0.11 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 37 H 0.08 0.31 8.11 -51.93 -0.42 -0.11 16 38 H 0.10 0.42 7.00 -51.93 -0.36 0.05 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.09 1.14 5.95 -51.93 -0.31 0.83 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.08 1.39 7.76 -51.93 -0.40 0.99 16 45 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 46 H 0.04 0.88 6.56 -51.93 -0.34 0.54 16 47 H 0.02 0.47 8.01 -51.93 -0.42 0.06 16 48 H 0.38 10.53 7.62 -40.82 -0.31 10.21 16 49 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 50 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 51 H 0.09 1.17 7.80 -51.92 -0.41 0.76 16 LS Contribution 396.71 15.07 5.98 5.98 Total: -1.00 -34.09 396.71 -9.08 -43.17 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -8.30 Total: 5.31 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -2.23 Total: -1.16 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: 0.21 Total: -62.62 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.29 Total: -8.81 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.09 -9.08 -43.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483937406.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.379 kcal (2) G-P(sol) polarization free energy of solvation -34.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds