Wall clock time and date at job start Wed Apr 1 2020 05:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46814 * 2 1 4 4 C 1.53113 * 109.46508 * 240.01665 * 2 1 3 5 5 C 1.53615 * 109.55793 * 169.94408 * 4 2 1 6 6 C 1.50593 * 108.24975 * 50.29321 * 5 4 2 7 7 O 1.33195 * 129.60468 * 162.69151 * 6 5 4 8 8 N 1.21424 * 111.56828 * 180.19500 * 7 6 5 9 9 C 1.31497 * 111.53168 * 359.96344 * 8 7 6 10 10 C 1.48327 * 127.15411 * 179.97438 * 9 8 7 11 11 O 1.21502 * 119.99525 * 180.02562 * 10 9 8 12 12 N 1.34770 * 120.00334 * 0.02562 * 10 9 8 13 13 C 1.47420 * 125.64905 * 355.25611 * 12 10 9 14 14 C 1.54913 * 104.83654 * 155.60483 * 13 12 10 15 15 C 1.55161 * 101.57960 * 37.00827 * 14 13 12 16 16 C 1.47025 * 125.64677 * 174.94141 * 12 10 9 17 17 H 1.08992 * 109.88642 * 300.74310 * 16 12 10 18 18 C 1.53001 * 109.88389 * 61.91070 * 16 12 10 19 19 N 1.46499 * 109.47215 * 185.36291 * 18 16 12 20 20 C 1.36941 * 119.99693 * 185.01543 * 19 18 16 21 21 H 1.07991 * 120.00318 * 359.97438 * 20 19 18 22 22 C 1.38807 * 119.99730 * 179.97438 * 20 19 18 23 23 N 1.31624 * 119.99946 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00199 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46892 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.47553 * 120.00026 * 24 22 20 27 27 H 1.48500 * 109.47241 * 240.00297 * 24 22 20 28 28 C 1.35382 * 123.76181 * 343.10124 * 6 5 4 29 29 C 1.50057 * 124.93743 * 359.70824 * 28 6 5 30 30 H 1.09005 * 109.47030 * 300.01508 * 1 2 3 31 31 H 1.08998 * 109.47028 * 60.01102 * 1 2 3 32 32 H 1.08997 * 109.47279 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47006 * 179.97438 * 3 2 1 34 34 H 1.09010 * 109.46896 * 299.98729 * 3 2 1 35 35 H 1.08997 * 109.47600 * 59.98617 * 3 2 1 36 36 H 1.08995 * 109.42895 * 290.21171 * 4 2 1 37 37 H 1.08999 * 109.42357 * 50.10499 * 4 2 1 38 38 H 1.09003 * 110.16664 * 290.34648 * 5 4 2 39 39 H 1.09007 * 109.28352 * 169.72387 * 5 4 2 40 40 H 1.09003 * 110.36815 * 274.44456 * 13 12 10 41 41 H 1.08997 * 110.36842 * 36.65122 * 13 12 10 42 42 H 1.09000 * 111.00568 * 155.08035 * 14 13 12 43 43 H 1.08993 * 110.99919 * 278.93792 * 14 13 12 44 44 H 1.08999 * 110.72052 * 82.86108 * 15 14 13 45 45 H 1.09000 * 110.72043 * 205.96040 * 15 14 13 46 46 H 1.09000 * 109.47060 * 305.36441 * 18 16 12 47 47 H 1.09004 * 109.46635 * 65.35895 * 18 16 12 48 48 H 0.96993 * 120.00174 * 5.01117 * 19 18 16 49 49 H 0.97007 * 119.99850 * 180.02562 * 23 22 20 50 50 H 1.09002 * 109.71554 * 103.76379 * 29 28 6 51 51 H 1.09008 * 109.71079 * 224.35305 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0402 -0.7214 -1.2504 5 6 3.5554 -0.5075 -1.3853 6 6 4.1988 -0.8461 -0.0665 7 8 5.4739 -1.1104 0.2132 8 7 5.6323 -1.3469 1.3936 9 6 4.4992 -1.2732 2.0568 10 6 4.2948 -1.4971 3.5087 11 8 3.1833 -1.3950 3.9886 12 7 5.3420 -1.8139 4.2957 13 6 6.7190 -2.0660 3.8334 14 6 7.6120 -1.7605 5.0618 15 6 6.7343 -2.2930 6.2252 16 6 5.3018 -1.9590 5.7582 17 1 4.9714 -1.0258 6.2144 18 6 4.3512 -3.0946 6.1426 19 7 4.2188 -3.1482 7.6006 20 6 3.4963 -4.1536 8.1859 21 1 3.0239 -4.9066 7.5727 22 6 3.3713 -4.2048 9.5674 23 7 3.9467 -3.2867 10.3147 24 14 2.3853 -5.5757 10.3659 25 1 1.8435 -6.4730 9.3140 26 1 3.2651 -6.3538 11.2745 27 1 1.2639 -4.9906 11.1439 28 6 3.5182 -0.9426 1.0998 29 6 2.0417 -0.7236 1.2539 30 1 -0.3633 0.5141 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9562 -0.8902 35 1 1.6764 1.9564 0.8898 36 1 1.8262 -1.7869 -1.1670 37 1 1.5394 -0.3189 -2.1309 38 1 3.7670 0.5307 -1.6415 39 1 3.9440 -1.1649 -2.1632 40 1 6.8330 -3.1070 3.5310 41 1 6.9689 -1.4020 3.0060 42 1 8.5553 -2.3035 5.0038 43 1 7.7853 -0.6890 5.1619 44 1 6.8607 -3.3693 6.3421 45 1 6.9705 -1.7751 7.1547 46 1 3.3732 -2.9169 5.6952 47 1 4.7505 -4.0414 5.7788 48 1 4.6428 -2.4718 8.1513 49 1 3.8597 -3.3227 11.2802 50 1 1.5363 -1.6839 1.3563 51 1 1.8508 -0.1119 2.1357 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483937406.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:24 Heat of formation + Delta-G solvation = 12.443019 kcal Electronic energy + Delta-G solvation = -31592.883893 eV Core-core repulsion = 27494.576683 eV Total energy + Delta-G solvation = -4098.307210 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -46.24262 -41.38185 -39.99715 -38.79646 -36.53044 -35.18238 -33.90412 -33.47604 -32.72482 -31.31394 -30.40328 -28.40417 -28.14211 -26.88613 -26.25886 -24.69629 -24.34859 -23.36046 -22.74890 -21.93265 -20.57132 -19.49907 -19.04316 -18.90437 -18.28508 -17.81027 -17.55242 -16.62684 -16.36954 -15.98179 -15.70201 -15.55255 -15.39525 -15.30584 -15.13724 -15.04595 -14.43552 -14.30191 -14.26857 -14.01651 -13.97396 -13.69877 -13.15017 -13.08078 -12.99728 -12.94381 -12.82637 -12.69099 -12.60964 -12.37710 -12.18600 -12.01319 -11.99939 -11.86741 -11.71887 -11.68899 -11.61386 -11.49273 -11.26818 -11.19992 -10.98838 -10.14134 -9.90391 -9.09486 -8.01465 -5.31981 -0.05149 0.59088 1.42386 1.44630 1.50498 1.55552 1.88864 1.93778 2.51067 2.70891 3.29674 3.33131 3.50840 3.51318 3.61900 3.80108 3.82439 3.89931 3.91238 4.02554 4.10114 4.12440 4.19256 4.22517 4.37382 4.40675 4.44255 4.61598 4.64608 4.70952 4.76550 4.78730 4.80165 4.88269 4.90760 4.93067 5.00990 5.01955 5.02941 5.04637 5.12585 5.13907 5.22461 5.23997 5.29629 5.37276 5.41307 5.44960 5.53383 6.18651 6.22762 6.71025 6.97363 7.26431 7.95413 8.24668 9.21952 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013244 B = 0.002719 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.671225 B =10295.039438 C =11841.417667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.064 4.064 3 C -0.143 4.143 4 C -0.105 4.105 5 C -0.034 4.034 6 C -0.014 4.014 7 O 0.137 5.863 8 N -0.342 5.342 9 C -0.034 4.034 10 C 0.597 3.403 11 O -0.552 6.552 12 N -0.599 5.599 13 C 0.094 3.906 14 C -0.116 4.116 15 C -0.114 4.114 16 C 0.138 3.862 17 H 0.060 0.940 18 C 0.154 3.846 19 N -0.734 5.734 20 C -0.251 4.251 21 H 0.067 0.933 22 C -0.069 4.069 23 N -0.965 5.965 24 Si 0.977 3.023 25 H -0.271 1.271 26 H -0.285 1.285 27 H -0.290 1.290 28 C -0.169 4.169 29 C -0.035 4.035 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.068 0.932 37 H 0.115 0.885 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.073 0.927 41 H 0.101 0.899 42 H 0.116 0.884 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.005 0.995 47 H 0.019 0.981 48 H 0.377 0.623 49 H 0.254 0.746 50 H 0.069 0.931 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.299 9.455 -31.371 32.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.064 4.064 3 C -0.200 4.200 4 C -0.142 4.142 5 C -0.071 4.071 6 C -0.078 4.078 7 O 0.062 5.938 8 N -0.043 5.043 9 C -0.190 4.190 10 C 0.385 3.615 11 O -0.429 6.429 12 N -0.332 5.332 13 C -0.027 4.027 14 C -0.154 4.154 15 C -0.153 4.153 16 C 0.034 3.966 17 H 0.078 0.922 18 C 0.027 3.973 19 N -0.378 5.378 20 C -0.383 4.383 21 H 0.085 0.915 22 C -0.262 4.262 23 N -0.615 5.615 24 Si 0.806 3.194 25 H -0.195 1.195 26 H -0.211 1.211 27 H -0.217 1.217 28 C -0.174 4.174 29 C -0.073 4.073 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.091 0.909 41 H 0.119 0.881 42 H 0.134 0.866 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.105 0.895 46 H 0.023 0.977 47 H 0.037 0.963 48 H 0.210 0.790 49 H 0.063 0.937 50 H 0.088 0.912 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.801 9.077 -30.731 32.269 hybrid contribution -1.288 -0.493 1.729 2.212 sum 2.513 8.584 -29.002 30.350 Atomic orbital electron populations 1.21841 0.93068 1.02222 1.02580 1.20727 0.96482 0.95714 0.93444 1.21959 1.00896 0.94663 1.02508 1.21812 0.93063 1.01265 0.98099 1.20679 0.93900 1.05198 0.87345 1.24805 0.82177 1.01054 0.99800 1.84649 1.27876 1.61765 1.19467 1.74559 1.21869 1.17344 0.90567 1.22770 0.91833 1.08741 0.95618 1.16970 0.83532 0.77227 0.83797 1.90806 1.24384 1.53082 1.74630 1.48448 1.10386 1.67067 1.07264 1.22752 0.78887 1.02173 0.98886 1.22822 0.98356 1.02830 0.91403 1.22595 0.90773 1.02368 0.99524 1.21674 0.98024 0.97670 0.79208 0.92151 1.20907 0.96163 0.95406 0.84858 1.42288 1.62600 1.32006 1.00894 1.19566 1.24274 1.03911 0.90538 0.91512 1.25582 1.02542 1.01552 0.96498 1.69819 1.49975 1.37314 1.04397 0.85026 0.77782 0.78452 0.78178 1.19527 1.21143 1.21703 1.20809 0.98940 1.06590 0.91101 1.20096 0.87021 1.00818 0.99337 0.93617 0.90006 0.92560 0.92973 0.89673 0.94116 0.91338 0.86714 0.86043 0.86066 0.90858 0.88149 0.86609 0.89563 0.90807 0.89544 0.97681 0.96306 0.79038 0.93675 0.91241 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.45 71.98 0.61 -1.13 16 2 C -0.06 -0.87 0.77 -51.96 -0.04 -0.91 16 3 C -0.14 -1.81 7.73 71.98 0.56 -1.25 16 4 C -0.11 -0.82 4.84 30.84 0.15 -0.67 16 5 C -0.03 -0.24 5.64 30.02 0.17 -0.07 16 6 C -0.01 -0.24 6.64 24.99 0.17 -0.07 16 7 O 0.14 2.79 11.18 78.66 0.88 3.67 16 8 N -0.34 -8.85 9.27 -48.95 -0.45 -9.31 16 9 C -0.03 -1.03 7.01 42.55 0.30 -0.73 16 10 C 0.60 22.65 7.69 86.93 0.67 23.32 16 11 O -0.55 -25.04 14.89 -3.72 -0.06 -25.10 16 12 N -0.60 -20.88 3.06 -790.88 -2.42 -23.30 16 13 C 0.09 2.47 6.35 86.86 0.55 3.02 16 14 C -0.12 -2.60 7.09 31.99 0.23 -2.37 16 15 C -0.11 -3.58 6.24 31.79 0.20 -3.38 16 16 C 0.14 5.36 2.94 45.34 0.13 5.49 16 17 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 18 C 0.15 7.45 5.66 86.38 0.49 7.94 16 19 N -0.73 -41.09 5.42 -343.46 -1.86 -42.95 16 20 C -0.25 -15.21 9.99 84.03 0.84 -14.37 16 21 H 0.07 3.99 7.83 -2.92 -0.02 3.97 16 22 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 23 N -0.96 -60.78 13.06 21.65 0.28 -60.50 16 24 Si 0.98 48.22 29.55 68.60 2.03 50.24 16 25 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 26 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 27 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 28 C -0.17 -4.18 5.60 -20.06 -0.11 -4.29 16 29 C -0.04 -0.82 4.41 29.83 0.13 -0.69 16 30 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.05 0.70 5.65 -2.39 -0.01 0.69 16 34 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.04 0.65 8.14 -2.39 -0.02 0.64 16 36 H 0.07 0.64 8.12 -2.39 -0.02 0.62 16 37 H 0.11 0.25 8.11 -2.39 -0.02 0.23 16 38 H 0.12 0.41 7.00 -2.39 -0.02 0.39 16 39 H 0.12 0.30 8.14 -2.38 -0.02 0.28 16 40 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.10 2.44 5.95 -2.39 -0.01 2.43 16 42 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.07 2.46 7.76 -2.39 -0.02 2.45 16 45 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 46 H 0.01 0.29 6.56 -2.39 -0.02 0.27 16 47 H 0.02 0.91 8.01 -2.38 -0.02 0.90 16 48 H 0.38 21.71 7.62 -92.71 -0.71 21.00 16 49 H 0.25 15.33 8.31 -92.70 -0.77 14.56 16 50 H 0.07 1.77 8.12 -2.39 -0.02 1.75 16 51 H 0.06 1.73 7.80 -2.38 -0.02 1.71 16 Total: -1.00 -78.60 396.71 4.13 -74.47 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: 0.23 Total: 26.63 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 5.50 Total: 6.14 kcal Atomic # 7 Polarization: -131.59 SS G_CDS: -4.45 Total: -136.05 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: 0.82 Total: -21.43 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.24 kcal Total: -78.60 4.13 -74.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483937406.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.911 kcal (2) G-P(sol) polarization free energy of solvation -78.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds