Wall clock time and date at job start Wed Apr 1 2020 05:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.46436 * 2 1 4 4 C 1.53111 * 109.46605 * 119.98326 * 2 1 3 5 5 C 1.53428 * 109.73045 * 50.14814 * 4 2 1 6 6 C 1.50604 * 108.31202 * 50.01347 * 5 4 2 7 7 O 1.33185 * 129.60553 * 163.21244 * 6 5 4 8 8 N 1.21424 * 111.57274 * 180.19048 * 7 6 5 9 9 C 1.31497 * 111.52491 * 359.96146 * 8 7 6 10 10 C 1.48330 * 127.15218 * 179.97438 * 9 8 7 11 11 O 1.21493 * 119.99709 * 180.02562 * 10 9 8 12 12 N 1.34774 * 120.00180 * 0.02562 * 10 9 8 13 13 C 1.47419 * 125.65030 * 4.80476 * 12 10 9 14 14 C 1.54908 * 104.83411 * 204.09414 * 13 12 10 15 15 C 1.55157 * 101.58179 * 322.98909 * 14 13 12 16 16 C 1.47022 * 125.64792 * 184.76328 * 12 10 9 17 17 H 1.08992 * 109.88574 * 59.55662 * 16 12 10 18 18 C 1.53000 * 109.88126 * 298.39235 * 16 12 10 19 19 N 1.46500 * 109.47282 * 176.74755 * 18 16 12 20 20 C 1.36939 * 120.00475 * 184.97788 * 19 18 16 21 21 H 1.08002 * 119.99818 * 0.02562 * 20 19 18 22 22 C 1.38810 * 120.00083 * 179.97438 * 20 19 18 23 23 N 1.31616 * 120.00609 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99678 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47131 * 60.00176 * 24 22 20 26 26 H 1.48499 * 109.46909 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47034 * 300.00278 * 24 22 20 28 28 C 1.35383 * 123.76039 * 343.65807 * 6 5 4 29 29 C 1.50065 * 124.93500 * 359.04965 * 28 6 5 30 30 H 1.09000 * 109.47240 * 300.02035 * 1 2 3 31 31 H 1.09001 * 109.47203 * 60.02202 * 1 2 3 32 32 H 1.08999 * 109.47589 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47814 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47143 * 299.98330 * 3 2 1 35 35 H 1.09002 * 109.47267 * 59.97693 * 3 2 1 36 36 H 1.09001 * 109.42587 * 290.07254 * 4 2 1 37 37 H 1.08997 * 109.39207 * 170.20599 * 4 2 1 38 38 H 1.09005 * 109.69945 * 290.31042 * 5 4 2 39 39 H 1.08995 * 109.69991 * 169.71461 * 5 4 2 40 40 H 1.09002 * 110.36875 * 85.25225 * 13 12 10 41 41 H 1.09005 * 110.36751 * 322.92925 * 13 12 10 42 42 H 1.09001 * 111.00553 * 81.06088 * 14 13 12 43 43 H 1.09005 * 111.00726 * 204.91598 * 14 13 12 44 44 H 1.09000 * 110.71983 * 153.86826 * 15 14 13 45 45 H 1.09008 * 110.71903 * 277.14195 * 15 14 13 46 46 H 1.09001 * 109.46993 * 296.74515 * 18 16 12 47 47 H 1.08996 * 109.47326 * 56.75013 * 18 16 12 48 48 H 0.97008 * 119.99810 * 4.97850 * 19 18 16 49 49 H 0.96996 * 120.00495 * 180.02562 * 23 22 20 50 50 H 1.08995 * 109.87569 * 224.68118 * 29 28 6 51 51 H 1.08994 * 109.51448 * 104.10929 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 6 2.0402 -0.7214 1.2504 5 6 1.3402 -2.0800 1.3865 6 6 1.4417 -2.7988 0.0669 7 8 1.2603 -4.0880 -0.2138 8 7 1.4291 -4.3159 -1.3944 9 6 1.7418 -3.2238 -2.0567 10 6 2.0211 -3.1057 -3.5087 11 8 2.2997 -2.0245 -3.9877 12 7 1.9659 -4.1978 -4.2966 13 6 1.5456 -5.5448 -3.8698 14 6 2.2214 -6.5087 -4.8767 15 6 2.1230 -5.6994 -6.1968 16 6 2.3141 -4.2428 -5.7243 17 1 3.3524 -3.9415 -5.8623 18 6 1.3903 -3.3139 -6.5146 19 7 1.7942 -3.3060 -7.9228 20 6 1.1746 -2.4650 -8.8083 21 1 0.3884 -1.8071 -8.4683 22 6 1.5577 -2.4572 -10.1424 23 7 2.5162 -3.2585 -10.5567 24 14 0.7130 -1.3093 -11.3500 25 1 0.9051 0.0970 -10.9134 26 1 1.3004 -1.4931 -12.7014 27 1 -0.7385 -1.6196 -11.3953 28 6 1.7626 -2.1898 -1.0988 29 6 2.0417 -0.7235 -1.2540 30 1 -0.3634 0.5141 0.8898 31 1 -0.3634 0.5135 -0.8902 32 1 -0.3634 -1.0276 0.0005 33 1 3.1297 1.4428 0.0005 34 1 1.6766 1.9562 -0.8901 35 1 1.6760 1.9564 0.8898 36 1 1.8284 -0.1147 2.1308 37 1 3.1160 -0.8747 1.1661 38 1 0.2916 -1.9290 1.6428 39 1 1.8279 -2.6683 2.1636 40 1 0.4610 -5.6388 -3.9242 41 1 1.8945 -5.7481 -2.8574 42 1 3.2617 -6.6898 -4.6062 43 1 1.6698 -7.4459 -4.9509 44 1 2.9161 -5.9885 -6.8864 45 1 1.1435 -5.8302 -6.6572 46 1 0.3627 -3.6683 -6.4334 47 1 1.4592 -2.3037 -6.1113 48 1 2.5006 -3.8967 -8.2281 49 1 2.7841 -3.2528 -11.4889 50 1 1.5278 -0.3397 -2.1353 51 1 3.1153 -0.5661 -1.3569 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483937416.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:29 Heat of formation + Delta-G solvation = 33.105266 kcal Electronic energy + Delta-G solvation = -31617.667685 eV Core-core repulsion = 27520.256457 eV Total energy + Delta-G solvation = -4097.411228 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.25394 -40.00007 -39.33070 -37.39585 -34.58978 -34.04063 -33.16823 -31.70321 -31.29627 -30.48095 -28.68483 -27.66891 -27.50257 -25.38644 -24.68628 -24.01812 -22.63626 -22.06033 -21.82911 -20.61124 -19.31010 -18.46130 -17.95656 -17.33618 -17.03980 -16.57638 -16.22423 -15.42833 -14.99362 -14.87526 -14.71798 -14.44142 -14.30938 -13.79110 -13.69174 -13.53070 -13.45005 -13.28413 -13.19799 -12.72194 -12.60238 -12.43417 -12.28407 -12.22054 -12.08049 -11.98303 -11.65902 -11.55849 -11.04159 -10.97200 -10.95179 -10.85249 -10.78458 -10.71338 -10.53773 -10.40320 -10.31028 -10.04809 -9.97236 -9.64770 -9.28671 -8.80131 -8.47709 -6.86143 -5.70875 -2.99019 0.99986 1.54520 2.63623 2.88671 3.22197 3.49039 3.52517 3.54402 3.83077 4.15621 4.25286 4.34726 4.58264 4.64699 4.66305 4.70278 4.72884 4.87378 4.95042 4.96579 5.07113 5.20155 5.24060 5.35425 5.39179 5.41902 5.43982 5.45579 5.52815 5.57220 5.60639 5.63897 5.68431 5.74878 5.77616 5.83342 5.85126 5.97548 5.99933 6.06644 6.08185 6.09914 6.12908 6.19873 6.44685 6.54604 6.85079 7.01603 7.55403 7.76400 7.83157 8.18728 8.48148 9.59031 10.15221 10.51358 11.52215 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012613 B = 0.002806 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.316347 B = 9975.085230 C =11763.467394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.068 4.068 3 C -0.141 4.141 4 C -0.108 4.108 5 C -0.035 4.035 6 C -0.041 4.041 7 O 0.121 5.879 8 N -0.337 5.337 9 C -0.005 4.005 10 C 0.606 3.394 11 O -0.508 6.508 12 N -0.597 5.597 13 C 0.096 3.904 14 C -0.134 4.134 15 C -0.121 4.121 16 C 0.132 3.868 17 H 0.080 0.920 18 C 0.145 3.855 19 N -0.728 5.728 20 C -0.234 4.234 21 H 0.069 0.931 22 C -0.014 4.014 23 N -0.936 5.936 24 Si 0.908 3.092 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.146 4.146 29 C -0.036 4.036 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.015 0.985 47 H 0.041 0.959 48 H 0.383 0.617 49 H 0.255 0.745 50 H 0.092 0.908 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.322 -0.406 29.435 29.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.068 4.068 3 C -0.198 4.198 4 C -0.145 4.145 5 C -0.072 4.072 6 C -0.105 4.105 7 O 0.049 5.951 8 N -0.041 5.041 9 C -0.163 4.163 10 C 0.391 3.609 11 O -0.381 6.381 12 N -0.331 5.331 13 C -0.027 4.027 14 C -0.172 4.172 15 C -0.159 4.159 16 C 0.029 3.971 17 H 0.098 0.902 18 C 0.017 3.983 19 N -0.372 5.372 20 C -0.365 4.365 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.585 5.585 24 Si 0.739 3.261 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.151 4.151 29 C -0.073 4.073 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.102 0.898 46 H 0.033 0.967 47 H 0.059 0.941 48 H 0.217 0.783 49 H 0.065 0.935 50 H 0.111 0.889 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.424 -0.888 28.717 28.766 hybrid contribution -0.135 0.965 -0.902 1.327 sum -1.559 0.077 27.815 27.859 Atomic orbital electron populations 1.21971 0.94155 1.02076 1.02126 1.20723 0.96162 0.95655 0.94267 1.21837 1.01207 0.94516 1.02226 1.21730 1.00514 0.93964 0.98328 1.20276 1.03187 0.94478 0.89302 1.24071 1.03888 0.83597 0.98945 1.84671 1.64017 1.25806 1.20569 1.74612 1.16931 1.22648 0.89888 1.23042 1.06002 0.90325 0.96895 1.16455 0.78473 0.83610 0.82372 1.90841 1.47960 1.25842 1.73486 1.48333 1.65102 1.08920 1.10728 1.22537 0.99463 0.81203 0.99470 1.22810 1.01171 0.98000 0.95217 1.22697 1.04188 0.92419 0.96624 1.21914 1.00118 0.96875 0.78184 0.90243 1.20971 0.94390 0.97131 0.85803 1.42193 1.44729 1.48099 1.02219 1.19178 1.13935 1.14304 0.89131 0.91310 1.24713 0.99172 1.00030 0.97093 1.69642 1.31960 1.41181 1.15683 0.86248 0.78759 0.80606 0.80493 1.21254 1.21687 1.21322 1.20615 1.05554 0.98375 0.90574 1.20117 1.02194 0.86625 0.98404 0.92366 0.92214 0.92497 0.92347 0.92043 0.92372 0.89998 0.90971 0.88580 0.88993 0.91346 0.89291 0.90830 0.89842 0.89563 0.89766 0.96745 0.94121 0.78312 0.93521 0.88940 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 7.73 37.15 0.29 -0.80 16 2 C -0.07 -0.51 0.77 -154.17 -0.12 -0.63 16 3 C -0.14 -0.94 8.44 37.15 0.31 -0.62 16 4 C -0.11 -0.60 4.82 -26.45 -0.13 -0.73 16 5 C -0.03 -0.20 5.66 -27.71 -0.16 -0.35 16 6 C -0.04 -0.39 6.64 -35.37 -0.23 -0.63 16 7 O 0.12 1.36 11.18 19.20 0.21 1.57 16 8 N -0.34 -4.49 9.28 33.29 0.31 -4.18 16 9 C 0.00 -0.07 7.01 -82.82 -0.58 -0.65 16 10 C 0.61 10.73 7.69 -12.11 -0.09 10.64 16 11 O -0.51 -10.47 14.90 5.37 0.08 -10.39 16 12 N -0.60 -10.00 3.06 -163.94 -0.50 -10.50 16 13 C 0.10 1.29 6.34 -2.53 -0.02 1.28 16 14 C -0.13 -1.62 7.08 -24.58 -0.17 -1.79 16 15 C -0.12 -1.88 6.00 -24.90 -0.15 -2.03 16 16 C 0.13 2.44 3.00 -66.95 -0.20 2.23 16 17 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 18 C 0.15 3.31 5.63 -4.04 -0.02 3.28 16 19 N -0.73 -19.46 5.44 -59.91 -0.33 -19.79 16 20 C -0.23 -6.90 9.99 -15.06 -0.15 -7.06 16 21 H 0.07 2.00 7.83 -52.49 -0.41 1.58 16 22 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 23 N -0.94 -28.93 13.06 55.49 0.72 -28.20 16 24 Si 0.91 23.20 29.55 -169.99 -5.02 18.18 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 C -0.15 -1.78 5.61 -104.91 -0.59 -2.37 16 29 C -0.04 -0.39 4.41 -27.90 -0.12 -0.52 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.46 5.67 -51.93 -0.29 0.17 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.31 8.11 -51.93 -0.42 -0.11 16 37 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 38 H 0.10 0.43 6.99 -51.93 -0.36 0.07 16 39 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.09 1.14 5.97 -51.93 -0.31 0.83 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 45 H 0.08 1.39 7.80 -51.92 -0.40 0.99 16 46 H 0.01 0.34 8.06 -51.93 -0.42 -0.08 16 47 H 0.04 1.02 6.60 -51.93 -0.34 0.68 16 48 H 0.38 10.47 7.39 -40.82 -0.30 10.17 16 49 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 50 H 0.09 1.20 7.81 -51.93 -0.41 0.80 16 51 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 LS Contribution 396.47 15.07 5.97 5.97 Total: -1.00 -34.10 396.47 -9.08 -43.19 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -8.30 Total: 5.43 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -2.23 Total: -1.27 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: 0.21 Total: -62.68 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.29 Total: -8.82 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.02 Total: 18.18 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.10 -9.08 -43.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483937416.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.291 kcal (2) G-P(sol) polarization free energy of solvation -34.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds