Wall clock time and date at job start Wed Apr 1 2020 04:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99592 * 2 1 4 4 H 1.48494 * 109.47299 * 270.00167 * 3 2 1 5 5 H 1.48505 * 109.47054 * 30.00016 * 3 2 1 6 6 H 1.48507 * 109.46930 * 149.99822 * 3 2 1 7 7 C 1.38950 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99639 * 0.02562 * 7 2 1 9 9 N 1.37093 * 120.00034 * 180.02562 * 7 2 1 10 10 C 1.34769 * 119.99923 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00192 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99929 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47354 * 174.43103 * 12 10 9 14 14 C 1.46818 * 110.99576 * 300.18507 * 13 12 10 15 15 C 1.53260 * 109.44305 * 189.19807 * 14 13 12 16 16 C 1.53216 * 108.61912 * 304.39413 * 15 14 13 17 17 C 1.52761 * 117.80108 * 266.02246 * 16 15 14 18 18 C 1.52735 * 117.84840 * 197.01067 * 16 15 14 19 19 H 1.08999 * 117.50104 * 215.22004 * 18 16 15 20 20 N 1.46496 * 117.50558 * 0.27214 * 18 16 15 21 21 C 1.34769 * 120.00315 * 204.99787 * 20 18 16 22 22 O 1.21284 * 120.00143 * 0.02562 * 21 20 18 23 23 C 1.50701 * 120.00200 * 179.97438 * 21 20 18 24 24 C 1.54627 * 111.04042 * 292.02671 * 23 21 20 25 25 C 1.51104 * 104.72864 * 217.33052 * 24 23 21 26 26 C 1.30526 * 111.10104 * 16.43826 * 25 24 23 27 27 C 1.51111 * 111.10616 * 0.02562 * 26 25 24 28 28 C 1.53221 * 114.73229 * 51.42493 * 16 15 14 29 29 C 1.46807 * 111.00067 * 64.86876 * 13 12 10 30 30 H 0.96995 * 120.00473 * 359.97438 * 1 2 3 31 31 H 0.97002 * 120.00004 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.47373 * 294.43072 * 12 10 9 33 33 H 1.09003 * 109.46997 * 54.42993 * 12 10 9 34 34 H 1.09004 * 109.47528 * 309.18526 * 14 13 12 35 35 H 1.08995 * 109.47590 * 69.20521 * 14 13 12 36 36 H 1.09002 * 109.61401 * 184.65610 * 15 14 13 37 37 H 1.09005 * 109.61473 * 64.13286 * 15 14 13 38 38 H 1.09007 * 117.50359 * 359.63655 * 17 16 15 39 39 H 1.08999 * 117.51157 * 144.66631 * 17 16 15 40 40 H 0.97007 * 119.99963 * 25.00142 * 20 18 16 41 41 H 1.09001 * 110.91136 * 56.03939 * 23 21 20 42 42 H 1.08993 * 110.38786 * 336.14828 * 24 23 21 43 43 H 1.09008 * 110.38397 * 98.52182 * 24 23 21 44 44 H 1.07990 * 124.45022 * 196.41634 * 25 24 23 45 45 H 1.07998 * 124.45141 * 180.02562 * 26 25 24 46 46 H 1.09004 * 110.38333 * 224.75499 * 27 26 25 47 47 H 1.08993 * 110.38778 * 102.37505 * 27 26 25 48 48 H 1.08997 * 109.61295 * 188.83116 * 28 16 15 49 49 H 1.09007 * 109.61081 * 68.31883 * 28 16 15 50 50 H 1.08998 * 109.47982 * 290.80116 * 29 13 12 51 51 H 1.09005 * 109.47562 * 50.81965 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4453 2.6527 0.7001 6 1 3.5456 1.4403 0.7001 7 6 2.0090 -1.2033 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0011 10 6 4.0538 -2.3703 0.0011 11 8 3.4474 -3.4208 0.0001 12 6 5.5608 -2.3703 0.0011 13 7 6.0506 -3.7487 0.1355 14 6 5.5763 -4.3560 1.3852 15 6 6.2861 -5.6969 1.6023 16 6 6.0561 -6.5774 0.3697 17 6 4.8826 -7.5550 0.4014 18 6 6.3180 -8.0761 0.5046 19 1 6.7284 -8.5952 -0.3615 20 7 6.7666 -8.5698 1.8088 21 6 7.4780 -9.7116 1.8889 22 8 7.7474 -10.3302 0.8810 23 6 7.9399 -10.2192 3.2305 24 6 9.0102 -9.2840 3.8394 25 6 9.9856 -10.2119 4.5257 26 6 9.8352 -11.4409 4.1125 27 6 8.7349 -11.5374 3.0812 28 6 6.3934 -5.9094 -0.9673 29 6 5.6773 -4.5559 -1.0325 30 1 -0.4850 0.8400 0.0004 31 1 3.8649 -0.3632 0.0007 32 1 5.9242 -1.9452 -0.9345 33 1 5.9241 -1.7724 0.8370 34 1 5.7956 -3.6895 2.2193 35 1 4.5005 -4.5200 1.3240 36 1 5.8769 -6.1888 2.4848 37 1 7.3545 -5.5277 1.7369 38 1 4.2721 -7.5795 1.3041 39 1 4.3485 -7.7309 -0.5323 40 1 6.5514 -8.0749 2.6150 41 1 7.0970 -10.3450 3.9101 42 1 9.5121 -8.7191 3.0539 43 1 8.5559 -8.6077 4.5636 44 1 10.7119 -9.8993 5.2612 45 1 10.4202 -12.2788 4.4617 46 1 8.0928 -12.3932 3.2900 47 1 9.1586 -11.6148 2.0800 48 1 6.0554 -6.5421 -1.7880 49 1 7.4704 -5.7573 -1.0389 50 1 4.5990 -4.7151 -1.0347 51 1 5.9696 -4.0338 -1.9436 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490585848.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:38 Heat of formation + Delta-G solvation = -44.150064 kcal Electronic energy + Delta-G solvation = -30555.298067 eV Core-core repulsion = 26454.536797 eV Total energy + Delta-G solvation = -4100.761270 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.57391 -40.97323 -39.82553 -38.44110 -37.28530 -35.83407 -34.32576 -33.77139 -31.90360 -31.51597 -30.26778 -29.06710 -28.03002 -25.73082 -24.50222 -24.20130 -23.06043 -22.05461 -21.29678 -20.93265 -20.36391 -19.68000 -19.41596 -18.39440 -17.70361 -17.46164 -17.00587 -16.86744 -16.45758 -16.17920 -15.87310 -15.67604 -15.49124 -15.33182 -15.19865 -14.73050 -14.50363 -14.29200 -13.91443 -13.80252 -13.49419 -13.28963 -13.19028 -13.03091 -13.02802 -12.92326 -12.79304 -12.63572 -12.49296 -12.42387 -12.18368 -12.05848 -12.01476 -11.92336 -11.59251 -11.46752 -11.29944 -11.00228 -10.96679 -10.67349 -10.21772 -9.79589 -9.68908 -8.97334 -8.42844 -6.02829 1.29562 1.34375 1.37353 1.43506 1.50337 1.93388 2.02419 2.21773 2.81350 2.99546 3.07436 3.14763 3.44630 3.61604 3.66049 3.73364 3.84837 3.88270 3.94720 4.22552 4.23324 4.27042 4.37677 4.42839 4.56376 4.58495 4.62318 4.65740 4.66793 4.78394 4.80211 4.82764 4.85734 4.90066 4.93215 4.96554 4.98555 5.09670 5.11178 5.18084 5.23278 5.32245 5.46640 5.48350 5.52475 5.63666 5.92849 5.99567 6.06185 6.15573 6.48420 6.57550 6.88164 7.17920 7.39350 7.95900 8.74680 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024289 B = 0.001905 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.507739 B =14693.387720 C =14924.843372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.017 4.017 3 Si 0.964 3.036 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.229 1.229 7 C -0.325 4.325 8 H 0.054 0.946 9 N -0.590 5.590 10 C 0.417 3.583 11 O -0.610 6.610 12 C 0.046 3.954 13 N -0.501 5.501 14 C 0.043 3.957 15 C -0.064 4.064 16 C -0.117 4.117 17 C -0.187 4.187 18 C 0.094 3.906 19 H 0.123 0.877 20 N -0.686 5.686 21 C 0.525 3.475 22 O -0.581 6.581 23 C -0.113 4.113 24 C -0.088 4.088 25 C -0.168 4.168 26 C -0.172 4.172 27 C -0.092 4.092 28 C -0.068 4.068 29 C 0.045 3.955 30 H 0.278 0.722 31 H 0.389 0.611 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.032 0.968 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.414 0.586 41 H 0.127 0.873 42 H 0.071 0.929 43 H 0.101 0.899 44 H 0.145 0.855 45 H 0.140 0.860 46 H 0.079 0.921 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.082 0.918 50 H 0.034 0.966 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.731 -13.868 8.968 28.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.215 4.215 3 Si 0.784 3.216 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.153 1.153 7 C -0.455 4.455 8 H 0.072 0.928 9 N -0.231 5.231 10 C 0.205 3.795 11 O -0.495 6.495 12 C -0.086 4.086 13 N -0.224 5.224 14 C -0.085 4.085 15 C -0.102 4.102 16 C -0.118 4.118 17 C -0.226 4.226 18 C -0.013 4.013 19 H 0.140 0.860 20 N -0.335 5.335 21 C 0.313 3.687 22 O -0.461 6.461 23 C -0.134 4.134 24 C -0.126 4.126 25 C -0.186 4.186 26 C -0.189 4.189 27 C -0.130 4.130 28 C -0.106 4.106 29 C -0.083 4.083 30 H 0.088 0.912 31 H 0.224 0.776 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.252 0.748 41 H 0.145 0.855 42 H 0.090 0.910 43 H 0.120 0.880 44 H 0.163 0.837 45 H 0.158 0.842 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.089 0.911 49 H 0.101 0.899 50 H 0.053 0.947 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 22.849 -14.906 8.286 28.512 hybrid contribution -1.772 1.160 -0.061 2.119 sum 21.076 -13.746 8.225 26.473 Atomic orbital electron populations 1.69807 1.08179 1.29197 1.50384 1.26135 0.96455 1.02780 0.96148 0.85373 0.79559 0.76781 0.79869 1.18333 1.20189 1.15269 1.18985 0.81764 0.94694 1.50055 0.92829 1.42264 1.05766 1.07975 1.67134 1.22378 0.92445 0.83398 0.81283 1.90488 1.71589 1.31977 1.55461 1.22313 0.87076 0.93099 1.06134 1.62382 1.56205 1.00854 1.02909 1.22233 0.98297 0.96319 0.91679 1.21083 1.01412 0.92900 0.94797 1.21985 1.01764 0.90084 0.97983 1.23589 0.91656 1.03677 1.03643 1.21572 0.97185 0.94617 0.87906 0.85971 1.45327 1.54519 1.24791 1.08889 1.20900 0.76435 0.79755 0.91576 1.90673 1.57871 1.58347 1.39210 1.22236 1.00549 0.97474 0.93158 1.21357 0.94267 0.97378 0.99569 1.23426 1.00144 0.94773 1.00262 1.23420 0.99144 0.98717 0.97657 1.21303 0.96106 0.96367 0.99217 1.21139 1.00999 0.94278 0.94220 1.22209 0.98887 0.94327 0.92925 0.91232 0.77577 0.86411 0.86257 0.90649 0.94950 0.90473 0.89545 0.88598 0.88842 0.74817 0.85492 0.91018 0.88034 0.83737 0.84213 0.90259 0.91159 0.91138 0.89943 0.94727 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.96 13.96 21.66 0.30 -55.65 16 2 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 3 Si 0.96 38.23 27.74 68.60 1.90 40.13 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.23 -7.58 6.52 99.48 0.65 -6.93 16 7 C -0.33 -18.67 10.16 84.04 0.85 -17.82 16 8 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 9 N -0.59 -26.86 5.09 -306.99 -1.56 -28.43 16 10 C 0.42 17.72 7.19 87.66 0.63 18.35 16 11 O -0.61 -31.14 11.30 -3.07 -0.03 -31.17 16 12 C 0.05 1.33 5.82 85.56 0.50 1.82 16 13 N -0.50 -14.13 4.78 -900.19 -4.30 -18.43 16 14 C 0.04 1.21 4.96 86.41 0.43 1.64 16 15 C -0.06 -1.35 5.30 30.75 0.16 -1.19 16 16 C -0.12 -2.65 2.02 -52.20 -0.11 -2.75 16 17 C -0.19 -4.48 9.85 30.53 0.30 -4.18 16 18 C 0.09 2.02 6.14 44.92 0.28 2.30 16 19 H 0.12 3.02 7.40 -2.39 -0.02 3.00 16 20 N -0.69 -12.06 5.35 -442.88 -2.37 -14.42 16 21 C 0.53 10.68 7.06 87.66 0.62 11.30 16 22 O -0.58 -16.89 15.07 -3.04 -0.05 -16.94 16 23 C -0.11 -1.56 3.55 -10.42 -0.04 -1.59 16 24 C -0.09 -0.96 6.37 30.53 0.19 -0.77 16 25 C -0.17 -1.79 10.78 26.26 0.28 -1.51 16 26 C -0.17 -2.07 10.77 26.27 0.28 -1.79 16 27 C -0.09 -1.43 6.18 30.54 0.19 -1.25 16 28 C -0.07 -1.63 5.87 30.75 0.18 -1.45 16 29 C 0.04 1.32 5.05 86.41 0.44 1.76 16 30 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 31 H 0.39 14.69 5.76 -92.71 -0.53 14.16 16 32 H 0.12 2.86 8.04 -2.39 -0.02 2.85 16 33 H 0.12 2.82 8.13 -2.39 -0.02 2.80 16 34 H 0.08 1.95 8.08 -2.39 -0.02 1.93 16 35 H 0.03 1.23 5.79 -2.39 -0.01 1.21 16 36 H 0.08 1.33 6.95 -2.39 -0.02 1.32 16 37 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 39 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.41 5.21 7.24 -92.70 -0.67 4.54 16 41 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.07 0.94 7.88 -2.39 -0.02 0.92 16 43 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 44 H 0.14 1.02 8.06 -2.92 -0.02 1.00 16 45 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 46 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 47 H 0.07 1.45 6.96 -2.39 -0.02 1.44 16 48 H 0.07 1.60 8.08 -2.39 -0.02 1.58 16 49 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 50 H 0.03 1.34 5.79 -2.39 -0.01 1.33 16 51 H 0.07 2.02 8.02 -2.38 -0.02 2.00 16 Total: -1.00 -77.63 399.51 -0.76 -78.40 By element: Atomic # 1 Polarization: 44.38 SS G_CDS: -0.31 Total: 44.07 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 5.66 Total: 2.45 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -7.93 Total: -116.94 kcal Atomic # 8 Polarization: -48.03 SS G_CDS: -0.08 Total: -48.11 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 1.90 Total: 40.13 kcal Total: -77.63 -0.76 -78.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490585848.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.245 kcal (2) G-P(sol) polarization free energy of solvation -77.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds