Wall clock time and date at job start Wed Apr 1 2020 05:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46138 * 2 1 4 4 C 1.53115 * 109.46543 * 119.97833 * 2 1 3 5 5 C 1.53433 * 109.72657 * 50.16308 * 4 2 1 6 6 C 1.50603 * 108.31045 * 50.02881 * 5 4 2 7 7 O 1.33180 * 129.60354 * 163.25385 * 6 5 4 8 8 N 1.21435 * 111.57594 * 180.09471 * 7 6 5 9 9 C 1.31504 * 111.51777 * 359.95868 * 8 7 6 10 10 C 1.48327 * 127.14982 * 180.02562 * 9 8 7 11 11 O 1.21495 * 120.00006 * 179.97438 * 10 9 8 12 12 N 1.34779 * 120.00247 * 359.97438 * 10 9 8 13 13 C 1.46502 * 120.00174 * 179.97438 * 12 10 9 14 14 C 1.52993 * 109.47409 * 179.97438 * 13 12 10 15 15 H 1.09000 * 109.47251 * 294.99962 * 14 13 12 16 16 N 1.46503 * 109.46923 * 54.99850 * 14 13 12 17 17 C 1.36936 * 119.99970 * 205.00225 * 16 14 13 18 18 H 1.07997 * 120.00248 * 359.97438 * 17 16 14 19 19 C 1.38813 * 120.00009 * 180.02562 * 17 16 14 20 20 N 1.31619 * 119.99926 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00258 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47210 * 59.99374 * 21 19 17 23 23 H 1.48494 * 109.47420 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.47184 * 300.00075 * 21 19 17 25 25 C 1.52995 * 109.47264 * 174.99852 * 14 13 12 26 26 C 1.53001 * 117.49874 * 248.74543 * 25 14 13 27 27 C 1.53006 * 117.49750 * 180.09147 * 25 14 13 28 28 C 1.35378 * 123.75986 * 343.28009 * 6 5 4 29 29 C 1.50064 * 124.94152 * 359.78305 * 28 6 5 30 30 H 1.08997 * 109.46652 * 300.02176 * 1 2 3 31 31 H 1.08997 * 109.47021 * 60.01999 * 1 2 3 32 32 H 1.08993 * 109.47121 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47485 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47255 * 299.98280 * 3 2 1 35 35 H 1.09005 * 109.46860 * 59.97592 * 3 2 1 36 36 H 1.09000 * 109.42555 * 290.08787 * 4 2 1 37 37 H 1.08993 * 109.38479 * 170.21650 * 4 2 1 38 38 H 1.08994 * 109.69929 * 290.32574 * 5 4 2 39 39 H 1.09001 * 109.69187 * 169.72823 * 5 4 2 40 40 H 0.97000 * 119.99691 * 359.97438 * 12 10 9 41 41 H 1.09005 * 109.46793 * 300.00019 * 13 12 10 42 42 H 1.09003 * 109.46817 * 59.99424 * 13 12 10 43 43 H 0.97001 * 119.99821 * 24.99874 * 16 14 13 44 44 H 0.97004 * 119.99885 * 179.97438 * 20 19 17 45 45 H 1.09002 * 115.55099 * 34.41833 * 25 14 13 46 46 H 1.09000 * 117.50282 * 0.02562 * 26 25 14 47 47 H 1.09001 * 117.49960 * 145.01735 * 26 25 14 48 48 H 1.09002 * 117.49278 * 214.98102 * 27 25 14 49 49 H 1.08996 * 117.50206 * 359.97333 * 27 25 14 50 50 H 1.08993 * 109.70933 * 103.58421 * 29 28 6 51 51 H 1.09006 * 109.71115 * 224.21925 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 6 2.0402 -0.7213 1.2505 5 6 1.3405 -2.0800 1.3864 6 6 1.4426 -2.7989 0.0669 7 8 1.2609 -4.0880 -0.2138 8 7 1.4287 -4.3158 -1.3948 9 6 1.7408 -3.2235 -2.0571 10 6 2.0178 -3.1049 -3.5095 11 8 2.2953 -2.0235 -3.9887 12 7 1.9618 -4.1968 -4.2976 13 6 2.2349 -4.0796 -5.7322 14 6 2.1061 -5.4549 -6.3899 15 1 2.8803 -6.1170 -6.0022 16 7 0.7871 -6.0178 -6.0904 17 6 0.6024 -7.3746 -6.1052 18 1 1.4288 -8.0296 -6.3380 19 6 -0.6475 -7.9079 -5.8220 20 7 -1.6549 -7.1096 -5.5387 21 14 -0.8998 -9.7586 -5.8428 22 1 -0.0043 -10.3916 -4.8415 23 1 -2.3130 -10.0694 -5.5088 24 1 -0.5825 -10.2864 -7.1942 25 6 2.2681 -5.3129 -7.9047 26 6 1.0330 -5.5598 -8.7734 27 6 2.1687 -6.5857 -8.7481 28 6 1.7566 -2.1886 -1.1000 29 6 2.0418 -0.7234 -1.2540 30 1 -0.3632 0.5142 0.8898 31 1 -0.3633 0.5135 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 3.1297 1.4428 0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6759 1.9565 0.8898 36 1 1.8281 -0.1147 2.1309 37 1 3.1161 -0.8744 1.1662 38 1 0.2918 -1.9292 1.6423 39 1 1.8281 -2.6682 2.1638 40 1 1.7407 -5.0603 -3.9149 41 1 1.5192 -3.3922 -6.1832 42 1 3.2459 -3.6998 -5.8797 43 1 0.0447 -5.4294 -5.8816 44 1 -2.5284 -7.4823 -5.3411 45 1 2.9688 -4.5452 -8.2327 46 1 0.1050 -5.8229 -8.2658 47 1 0.9214 -4.9546 -9.6731 48 1 2.8040 -6.6550 -9.6311 49 1 1.9885 -7.5241 -8.2238 50 1 3.1156 -0.5667 -1.3566 51 1 1.5278 -0.3394 -2.1353 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490689640.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:36 Heat of formation + Delta-G solvation = 31.351945 kcal Electronic energy + Delta-G solvation = -31277.350553 eV Core-core repulsion = 27179.863296 eV Total energy + Delta-G solvation = -4097.487258 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -46.22855 -40.85517 -39.94065 -39.17564 -36.05656 -35.19258 -35.03484 -33.83397 -32.67690 -31.35581 -29.98351 -28.34517 -28.10129 -26.30828 -25.32046 -24.60280 -23.65003 -22.95755 -22.83361 -21.53509 -20.61663 -19.57766 -19.15732 -18.97429 -18.41632 -17.66772 -17.11264 -16.86136 -16.36810 -16.20207 -15.97821 -15.60724 -15.47160 -15.34134 -15.25926 -14.77844 -14.57310 -14.33165 -14.21090 -14.01211 -13.78553 -13.08425 -12.99697 -12.91106 -12.86999 -12.69429 -12.67174 -12.65018 -12.55323 -12.25613 -12.18432 -12.00570 -11.71886 -11.62621 -11.60122 -11.50466 -11.24538 -11.19107 -11.05972 -10.88177 -10.65968 -10.21504 -10.11433 -9.04390 -7.92118 -5.20392 0.01324 0.62660 1.46254 1.47169 1.52615 1.79908 1.97806 2.04355 2.54913 2.87453 3.10303 3.41399 3.46463 3.58169 3.80024 3.82123 3.90788 3.92984 3.99889 4.11968 4.20495 4.24788 4.28639 4.41054 4.43399 4.47486 4.53701 4.59099 4.64568 4.73848 4.81576 4.84593 4.90563 4.92483 4.94942 5.01875 5.07983 5.12449 5.14526 5.15750 5.17298 5.24185 5.31303 5.39853 5.43460 5.48950 5.54780 5.62641 5.66857 6.26427 6.27143 6.84809 7.03051 7.35265 8.05314 8.30506 9.30166 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013634 B = 0.002776 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.225636 B =10082.294045 C =11451.176278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.064 4.064 3 C -0.137 4.137 4 C -0.103 4.103 5 C -0.035 4.035 6 C -0.026 4.026 7 O 0.132 5.868 8 N -0.358 5.358 9 C -0.044 4.044 10 C 0.593 3.407 11 O -0.552 6.552 12 N -0.698 5.698 13 C 0.126 3.874 14 C 0.192 3.808 15 H 0.058 0.942 16 N -0.721 5.721 17 C -0.222 4.222 18 H 0.076 0.924 19 C -0.068 4.068 20 N -0.965 5.965 21 Si 0.960 3.040 22 H -0.281 1.281 23 H -0.302 1.302 24 H -0.280 1.280 25 C -0.167 4.167 26 C -0.172 4.172 27 C -0.169 4.169 28 C -0.163 4.163 29 C -0.031 4.031 30 H 0.083 0.917 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.073 0.927 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.410 0.590 41 H 0.060 0.940 42 H 0.090 0.910 43 H 0.372 0.628 44 H 0.247 0.753 45 H 0.120 0.880 46 H 0.075 0.925 47 H 0.093 0.907 48 H 0.104 0.896 49 H 0.077 0.923 50 H 0.081 0.919 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.725 16.182 14.744 23.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 C -0.194 4.194 4 C -0.140 4.140 5 C -0.073 4.073 6 C -0.091 4.091 7 O 0.056 5.944 8 N -0.059 5.059 9 C -0.201 4.201 10 C 0.377 3.623 11 O -0.430 6.430 12 N -0.348 5.348 13 C 0.003 3.997 14 C 0.082 3.918 15 H 0.076 0.924 16 N -0.361 5.361 17 C -0.353 4.353 18 H 0.094 0.906 19 C -0.260 4.260 20 N -0.616 5.616 21 Si 0.790 3.210 22 H -0.208 1.208 23 H -0.229 1.229 24 H -0.206 1.206 25 C -0.188 4.188 26 C -0.209 4.209 27 C -0.206 4.206 28 C -0.168 4.168 29 C -0.068 4.068 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.132 0.868 37 H 0.092 0.908 38 H 0.132 0.868 39 H 0.137 0.863 40 H 0.246 0.754 41 H 0.078 0.922 42 H 0.108 0.892 43 H 0.205 0.795 44 H 0.056 0.944 45 H 0.138 0.862 46 H 0.094 0.906 47 H 0.111 0.889 48 H 0.122 0.878 49 H 0.095 0.905 50 H 0.099 0.901 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.816 15.461 13.914 23.000 hybrid contribution -0.959 -1.024 -0.478 1.482 sum 8.858 14.438 13.435 21.620 Atomic orbital electron populations 1.21978 0.94357 1.01435 1.02561 1.20733 0.95930 0.96227 0.93533 1.21814 1.01382 0.93531 1.02654 1.21771 1.00362 0.93556 0.98337 1.20644 1.04817 0.94549 0.87280 1.24968 1.01302 0.82484 1.00355 1.84665 1.63180 1.27201 1.19317 1.74681 1.16850 1.23464 0.90897 1.23121 1.08336 0.91730 0.96884 1.17074 0.77356 0.84305 0.83550 1.90713 1.50240 1.27305 1.74699 1.45930 1.68481 1.10918 1.09462 1.21648 1.01633 0.98027 0.78428 1.20137 0.88238 0.91609 0.91784 0.92432 1.42520 1.06969 1.03745 1.82915 1.19375 0.94437 0.84088 1.37421 0.90605 1.25364 0.96187 1.00847 1.03638 1.69805 1.01064 1.34699 1.55998 0.85415 0.75984 0.81727 0.77859 1.20758 1.22859 1.20637 1.23015 1.01366 1.00353 0.94098 1.22770 0.94057 1.03235 1.00872 1.22845 1.02151 0.93863 1.01753 1.20883 1.06655 0.98847 0.90459 1.20125 1.01602 0.85798 0.99293 0.89838 0.93776 0.93822 0.91987 0.93208 0.90323 0.86759 0.90840 0.86801 0.86330 0.75379 0.92183 0.89209 0.79541 0.94420 0.86248 0.90624 0.88855 0.87788 0.90488 0.90080 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 7.73 71.98 0.56 -1.63 16 2 C -0.06 -0.90 0.77 -51.96 -0.04 -0.94 16 3 C -0.14 -1.49 8.44 71.98 0.61 -0.88 16 4 C -0.10 -0.95 4.83 30.78 0.15 -0.80 16 5 C -0.04 -0.40 5.66 29.96 0.17 -0.23 16 6 C -0.03 -0.60 6.65 24.99 0.17 -0.43 16 7 O 0.13 3.81 11.18 78.77 0.88 4.69 16 8 N -0.36 -12.69 11.89 -48.94 -0.58 -13.27 16 9 C -0.04 -1.55 7.19 42.55 0.31 -1.24 16 10 C 0.59 22.59 7.85 86.93 0.68 23.27 16 11 O -0.55 -22.14 16.09 -3.70 -0.06 -22.20 16 12 N -0.70 -26.43 5.39 -465.50 -2.51 -28.94 16 13 C 0.13 4.43 5.21 86.38 0.45 4.88 16 14 C 0.19 7.22 2.86 44.99 0.13 7.35 16 15 H 0.06 2.20 8.08 -2.39 -0.02 2.18 16 16 N -0.72 -34.09 3.08 -322.95 -0.99 -35.08 16 17 C -0.22 -11.58 8.16 84.03 0.69 -10.89 16 18 H 0.08 3.84 6.91 -2.91 -0.02 3.82 16 19 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 20 N -0.96 -58.36 13.06 21.65 0.28 -58.08 16 21 Si 0.96 46.06 29.55 68.60 2.03 48.09 16 22 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 23 H -0.30 -14.88 7.11 99.48 0.71 -14.18 16 24 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 25 C -0.17 -5.62 5.71 -10.79 -0.06 -5.68 16 26 C -0.17 -6.40 9.74 30.62 0.30 -6.10 16 27 C -0.17 -5.83 9.87 30.62 0.30 -5.53 16 28 C -0.16 -4.47 5.59 -20.05 -0.11 -4.58 16 29 C -0.03 -0.69 4.41 29.83 0.13 -0.56 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.04 0.78 5.66 -2.39 -0.01 0.76 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 36 H 0.11 0.41 8.11 -2.39 -0.02 0.39 16 37 H 0.07 0.70 8.12 -2.39 -0.02 0.68 16 38 H 0.11 0.98 6.99 -2.39 -0.02 0.97 16 39 H 0.12 0.80 8.14 -2.39 -0.02 0.79 16 40 H 0.41 16.78 7.91 -92.71 -0.73 16.05 16 41 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 42 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 43 H 0.37 19.74 7.80 -92.71 -0.72 19.01 16 44 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 45 H 0.12 3.31 8.11 -2.39 -0.02 3.29 16 46 H 0.08 3.53 6.68 -2.39 -0.02 3.52 16 47 H 0.09 2.99 8.14 -2.39 -0.02 2.98 16 48 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 49 H 0.08 3.07 6.22 -2.39 -0.01 3.05 16 50 H 0.08 1.80 8.12 -2.39 -0.02 1.78 16 51 H 0.06 1.77 7.81 -2.38 -0.02 1.75 16 Total: -1.00 -68.20 403.96 3.44 -64.76 By element: Atomic # 1 Polarization: 47.84 SS G_CDS: -0.50 Total: 47.35 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 4.89 Total: -7.32 kcal Atomic # 7 Polarization: -131.57 SS G_CDS: -3.80 Total: -135.37 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: 0.82 Total: -17.51 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -68.20 3.44 -64.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490689640.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.111 kcal (2) G-P(sol) polarization free energy of solvation -68.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds