Wall clock time and date at job start Wed Apr 1 2020 04:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00186 * 2 1 4 4 H 1.48498 * 109.47215 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46963 * 300.00302 * 3 2 1 6 6 H 1.48497 * 109.46598 * 59.99993 * 3 2 1 7 7 C 1.38816 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99843 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99782 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99865 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47114 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.43311 * 52.46729 * 11 10 9 13 13 C 1.54268 * 110.60235 * 289.84520 * 11 10 9 14 14 C 1.53870 * 106.59981 * 217.65581 * 13 11 10 15 15 C 1.54273 * 106.59893 * 0.02562 * 14 13 11 16 16 C 1.54887 * 104.19680 * 23.60636 * 15 14 13 17 17 H 1.09003 * 110.91108 * 80.44741 * 16 15 14 18 18 N 1.46499 * 110.75867 * 203.74666 * 16 15 14 19 19 C 1.34779 * 119.99872 * 268.33221 * 18 16 15 20 20 O 1.21286 * 120.00040 * 359.97438 * 19 18 16 21 21 C 1.50698 * 120.00201 * 179.97438 * 19 18 16 22 22 C 1.52992 * 109.47592 * 179.97438 * 21 19 18 23 23 C 1.52997 * 109.47482 * 179.97438 * 22 21 19 24 24 N 1.46505 * 109.47212 * 179.97438 * 23 22 21 25 25 C 1.35764 * 119.61995 * 90.00106 * 24 23 22 26 26 C 1.35351 * 120.69947 * 180.02562 * 25 24 23 27 27 C 1.40193 * 119.94598 * 359.97438 * 26 25 24 28 28 C 1.36404 * 119.27031 * 0.02562 * 27 26 25 29 29 C 1.34656 * 119.62335 * 269.73025 * 24 23 22 30 30 O 1.22061 * 119.98888 * 359.97438 * 29 24 23 31 31 H 0.97005 * 120.00153 * 359.97438 * 1 2 3 32 32 H 0.97003 * 120.00202 * 0.02562 * 9 7 2 33 33 H 1.09005 * 109.46893 * 60.00551 * 10 9 7 34 34 H 1.09001 * 109.47670 * 300.00484 * 10 9 7 35 35 H 1.09005 * 110.02419 * 336.94090 * 13 11 10 36 36 H 1.08993 * 110.03178 * 98.36885 * 13 11 10 37 37 H 1.09005 * 110.02973 * 119.28039 * 14 13 11 38 38 H 1.08998 * 110.03229 * 240.66639 * 14 13 11 39 39 H 1.09004 * 110.47898 * 264.93035 * 15 14 13 40 40 H 1.08998 * 110.48860 * 142.29114 * 15 14 13 41 41 H 0.96992 * 119.99793 * 88.32852 * 18 16 15 42 42 H 1.09002 * 109.47210 * 59.99599 * 21 19 18 43 43 H 1.09001 * 109.46665 * 299.99857 * 21 19 18 44 44 H 1.09002 * 109.47103 * 59.99616 * 22 21 19 45 45 H 1.08998 * 109.46862 * 300.00428 * 22 21 19 46 46 H 1.09002 * 109.47153 * 59.99783 * 23 22 21 47 47 H 1.09001 * 109.46832 * 299.99974 * 23 22 21 48 48 H 1.07993 * 119.65277 * 359.97438 * 25 24 23 49 49 H 1.08002 * 120.02597 * 179.97438 * 26 25 24 50 50 H 1.08002 * 120.36711 * 179.97438 * 27 26 25 51 51 H 1.07991 * 120.35004 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0637 -4.8197 -0.0008 12 1 0.3425 -4.7044 -0.8099 13 6 0.3399 -4.9140 1.3583 14 6 0.1735 -6.4127 1.6646 15 6 0.8026 -7.1769 0.4813 16 6 1.8106 -6.1710 -0.1277 17 1 2.7383 -6.1552 0.4444 18 7 2.0752 -6.4876 -1.5334 19 6 3.1018 -7.2975 -1.8600 20 8 3.8069 -7.7637 -0.9903 21 6 3.3737 -7.6237 -3.3059 22 6 4.5845 -8.5541 -3.4000 23 6 4.8601 -8.8858 -4.8679 24 7 6.0200 -9.7763 -4.9579 25 6 5.8379 -11.1212 -4.9214 26 6 6.8939 -11.9640 -5.0024 27 6 8.1921 -11.4494 -5.1259 28 6 8.3731 -10.0979 -5.1625 29 6 7.2540 -9.2516 -5.0815 30 8 7.4011 -8.0405 -5.1184 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3881 -0.0005 33 1 2.6853 -3.7150 0.8879 34 1 2.6840 -3.7142 -0.8921 35 1 0.9398 -4.4386 2.1344 36 1 -0.6371 -4.4351 1.2950 37 1 0.6925 -6.6647 2.5895 38 1 -0.8843 -6.6610 1.7508 39 1 0.0393 -7.4423 -0.2503 40 1 1.3199 -8.0688 0.8349 41 1 1.5115 -6.1145 -2.2289 42 1 3.5793 -6.7039 -3.8535 43 1 2.5022 -8.1162 -3.7373 44 1 4.3793 -9.4740 -2.8523 45 1 5.4558 -8.0613 -2.9686 46 1 5.0652 -7.9662 -5.4159 47 1 3.9887 -9.3789 -5.2988 48 1 4.8400 -11.5228 -4.8259 49 1 6.7365 -13.0320 -4.9718 50 1 9.0397 -12.1156 -5.1906 51 1 9.3654 -9.6826 -5.2577 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568532751.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:40 Heat of formation + Delta-G solvation = -47.110761 kcal Electronic energy + Delta-G solvation = -29606.075140 eV Core-core repulsion = 25505.185484 eV Total energy + Delta-G solvation = -4100.889656 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.65994 -40.00593 -38.09214 -37.19137 -35.85869 -34.45780 -33.62534 -33.02165 -31.39775 -30.22508 -28.67716 -28.42936 -26.92137 -24.59528 -24.25538 -23.51266 -22.23000 -21.94633 -20.63338 -20.42443 -19.39521 -18.05463 -17.65573 -17.23861 -16.81187 -16.68202 -16.36489 -15.93847 -15.86501 -15.03977 -14.89643 -14.53759 -14.51342 -14.22048 -14.10069 -13.58673 -13.41062 -13.12845 -13.08718 -12.91915 -12.74045 -12.52503 -12.29827 -12.23133 -12.05650 -11.94879 -11.88231 -11.25027 -11.14450 -10.96583 -10.91480 -10.74130 -10.52666 -10.46826 -10.40995 -10.21894 -10.14176 -9.95166 -9.83866 -9.69150 -8.93024 -8.86566 -8.32840 -6.90638 -5.75995 -3.04085 0.46648 1.52976 2.25483 2.62493 3.16439 3.34368 3.44305 3.50590 3.52677 4.13382 4.21608 4.41959 4.48827 4.56752 4.60170 4.69598 4.74814 4.81535 4.85926 4.87651 4.97663 5.03559 5.08271 5.15144 5.28836 5.45068 5.55635 5.59757 5.63121 5.64462 5.67111 5.71348 5.73210 5.81641 5.89990 5.90994 5.92646 6.06349 6.15570 6.19797 6.27846 6.31087 6.48951 6.56213 6.61352 6.73343 6.79641 6.91798 7.52947 7.72572 7.74043 8.23383 8.43167 9.54665 10.12291 10.47439 11.46920 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011725 B = 0.001945 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.435897 B =14390.973138 C =16283.254206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.161 3.839 11 C -0.102 4.102 12 H 0.078 0.922 13 C -0.112 4.112 14 C -0.122 4.122 15 C -0.131 4.131 16 C 0.144 3.856 17 H 0.097 0.903 18 N -0.718 5.718 19 C 0.514 3.486 20 O -0.544 6.544 21 C -0.139 4.139 22 C -0.117 4.117 23 C 0.088 3.912 24 N -0.494 5.494 25 C 0.136 3.864 26 C -0.237 4.237 27 C -0.018 4.018 28 C -0.244 4.244 29 C 0.510 3.490 30 O -0.547 6.547 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.020 0.980 34 H 0.018 0.982 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.401 0.599 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.103 0.897 47 H 0.092 0.908 48 H 0.161 0.839 49 H 0.144 0.856 50 H 0.133 0.867 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.823 -29.330 -10.772 31.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.033 3.967 11 C -0.121 4.121 12 H 0.096 0.904 13 C -0.150 4.150 14 C -0.161 4.161 15 C -0.170 4.170 16 C 0.039 3.961 17 H 0.115 0.885 18 N -0.368 5.368 19 C 0.300 3.700 20 O -0.421 6.421 21 C -0.179 4.179 22 C -0.155 4.155 23 C -0.033 4.033 24 N -0.204 5.204 25 C 0.008 3.992 26 C -0.261 4.261 27 C -0.040 4.040 28 C -0.266 4.266 29 C 0.312 3.688 30 O -0.429 6.429 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.038 0.962 34 H 0.035 0.965 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.236 0.764 42 H 0.118 0.882 43 H 0.114 0.886 44 H 0.093 0.907 45 H 0.100 0.900 46 H 0.122 0.878 47 H 0.111 0.889 48 H 0.179 0.821 49 H 0.162 0.838 50 H 0.151 0.849 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.549 -28.709 -10.166 31.152 hybrid contribution -0.202 1.052 -0.323 1.119 sum 6.347 -27.657 -10.488 30.252 Atomic orbital electron populations 1.69667 1.05069 1.25464 1.58096 1.24729 0.95536 0.97660 1.03153 0.86125 0.78861 0.84135 0.77160 1.20555 1.21890 1.21879 1.19289 0.91081 0.84200 1.42248 0.91209 1.42337 1.05797 0.99896 1.89453 1.20688 0.92922 0.85195 0.97872 1.22417 0.97755 0.93517 0.98419 0.90365 1.22074 1.01148 0.95028 0.96793 1.22103 1.00394 0.95702 0.97857 1.22690 0.98171 0.98239 0.97871 1.22057 0.98885 0.93917 0.81211 0.88478 1.46007 1.32168 1.49490 1.09109 1.20521 0.79986 0.78402 0.91077 1.90707 1.47936 1.52433 1.51023 1.21561 0.99680 1.02042 0.94660 1.21627 0.98854 1.00542 0.94525 1.22090 0.86511 0.95883 0.98854 1.45572 1.09751 1.06624 1.58500 1.21986 1.01098 0.82379 0.93703 1.20658 0.91918 1.00409 1.13069 1.21446 0.97371 0.95287 0.89907 1.22166 0.99218 0.93812 1.11392 1.17209 0.82729 0.89495 0.79353 1.90997 1.84729 1.14406 1.52779 0.93632 0.78297 0.96233 0.96464 0.91002 0.91280 0.91920 0.91930 0.91608 0.91683 0.76413 0.88177 0.88638 0.90674 0.90026 0.87839 0.88922 0.82139 0.83824 0.84878 0.83515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.24 -6.72 9.99 -15.06 -0.15 -6.88 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -18.43 5.49 -59.91 -0.33 -18.76 16 10 C 0.16 3.26 5.59 -4.04 -0.02 3.24 16 11 C -0.10 -1.58 2.51 -88.94 -0.22 -1.80 16 12 H 0.08 1.20 8.02 -51.93 -0.42 0.78 16 13 C -0.11 -1.68 6.23 -25.61 -0.16 -1.84 16 14 C -0.12 -1.48 6.80 -25.61 -0.17 -1.65 16 15 C -0.13 -1.55 6.51 -25.07 -0.16 -1.72 16 16 C 0.14 1.97 2.69 -65.92 -0.18 1.80 16 17 H 0.10 1.55 7.46 -51.93 -0.39 1.17 16 18 N -0.72 -8.40 5.18 -51.86 -0.27 -8.67 16 19 C 0.51 6.33 7.83 -10.99 -0.09 6.24 16 20 O -0.54 -8.89 15.63 5.55 0.09 -8.80 16 21 C -0.14 -1.12 5.70 -27.89 -0.16 -1.28 16 22 C -0.12 -1.04 4.83 -26.74 -0.13 -1.17 16 23 C 0.09 0.61 5.34 -4.04 -0.02 0.59 16 24 N -0.49 -4.07 2.58 -119.77 -0.31 -4.38 16 25 C 0.14 0.69 10.28 -16.84 -0.17 0.52 16 26 C -0.24 -1.11 10.01 -39.88 -0.40 -1.51 16 27 C -0.02 -0.11 10.10 -39.51 -0.40 -0.51 16 28 C -0.24 -2.19 9.99 -39.38 -0.39 -2.58 16 29 C 0.51 5.91 7.41 -15.45 -0.11 5.80 16 30 O -0.55 -8.65 16.63 4.86 0.08 -8.57 16 31 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.38 10.05 7.63 -40.82 -0.31 9.74 16 33 H 0.02 0.42 7.96 -51.93 -0.41 0.01 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 1.19 7.72 -51.93 -0.40 0.78 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.40 3.83 8.57 -40.82 -0.35 3.48 16 42 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 45 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 46 H 0.10 0.87 7.38 -51.93 -0.38 0.49 16 47 H 0.09 0.32 8.01 -51.93 -0.42 -0.10 16 48 H 0.16 0.25 8.04 -52.49 -0.42 -0.17 16 49 H 0.14 0.30 8.06 -52.49 -0.42 -0.12 16 50 H 0.13 0.43 8.06 -52.49 -0.42 0.00 16 51 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 419.19 15.07 6.32 6.32 Total: -1.00 -37.50 419.19 -10.30 -47.80 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -8.54 Total: 8.14 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -3.04 Total: -3.29 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -0.18 Total: -59.35 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: 0.17 Total: -17.37 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -37.50 -10.30 -47.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568532751.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.693 kcal (2) G-P(sol) polarization free energy of solvation -37.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds