Wall clock time and date at job start Wed Apr 1 2020 04:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00186 * 2 1 4 4 H 1.48498 * 109.47215 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46963 * 300.00302 * 3 2 1 6 6 H 1.48497 * 109.46598 * 59.99993 * 3 2 1 7 7 C 1.38816 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99843 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99782 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99865 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47114 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.43311 * 52.46729 * 11 10 9 13 13 C 1.54268 * 110.60235 * 289.84520 * 11 10 9 14 14 C 1.53870 * 106.59981 * 217.65581 * 13 11 10 15 15 C 1.54273 * 106.59893 * 0.02562 * 14 13 11 16 16 C 1.54887 * 104.19680 * 23.60636 * 15 14 13 17 17 H 1.09003 * 110.91108 * 80.44741 * 16 15 14 18 18 N 1.46499 * 110.75867 * 203.74666 * 16 15 14 19 19 C 1.34779 * 119.99872 * 268.33221 * 18 16 15 20 20 O 1.21286 * 120.00040 * 359.97438 * 19 18 16 21 21 C 1.50698 * 120.00201 * 179.97438 * 19 18 16 22 22 C 1.52992 * 109.47592 * 179.97438 * 21 19 18 23 23 C 1.52997 * 109.47482 * 179.97438 * 22 21 19 24 24 N 1.46505 * 109.47212 * 179.97438 * 23 22 21 25 25 C 1.35764 * 119.61995 * 90.00106 * 24 23 22 26 26 C 1.35351 * 120.69947 * 180.02562 * 25 24 23 27 27 C 1.40193 * 119.94598 * 359.97438 * 26 25 24 28 28 C 1.36404 * 119.27031 * 0.02562 * 27 26 25 29 29 C 1.34656 * 119.62335 * 269.73025 * 24 23 22 30 30 O 1.22061 * 119.98888 * 359.97438 * 29 24 23 31 31 H 0.97005 * 120.00153 * 359.97438 * 1 2 3 32 32 H 0.97003 * 120.00202 * 0.02562 * 9 7 2 33 33 H 1.09005 * 109.46893 * 60.00551 * 10 9 7 34 34 H 1.09001 * 109.47670 * 300.00484 * 10 9 7 35 35 H 1.09005 * 110.02419 * 336.94090 * 13 11 10 36 36 H 1.08993 * 110.03178 * 98.36885 * 13 11 10 37 37 H 1.09005 * 110.02973 * 119.28039 * 14 13 11 38 38 H 1.08998 * 110.03229 * 240.66639 * 14 13 11 39 39 H 1.09004 * 110.47898 * 264.93035 * 15 14 13 40 40 H 1.08998 * 110.48860 * 142.29114 * 15 14 13 41 41 H 0.96992 * 119.99793 * 88.32852 * 18 16 15 42 42 H 1.09002 * 109.47210 * 59.99599 * 21 19 18 43 43 H 1.09001 * 109.46665 * 299.99857 * 21 19 18 44 44 H 1.09002 * 109.47103 * 59.99616 * 22 21 19 45 45 H 1.08998 * 109.46862 * 300.00428 * 22 21 19 46 46 H 1.09002 * 109.47153 * 59.99783 * 23 22 21 47 47 H 1.09001 * 109.46832 * 299.99974 * 23 22 21 48 48 H 1.07993 * 119.65277 * 359.97438 * 25 24 23 49 49 H 1.08002 * 120.02597 * 179.97438 * 26 25 24 50 50 H 1.08002 * 120.36711 * 179.97438 * 27 26 25 51 51 H 1.07991 * 120.35004 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0637 -4.8197 -0.0008 12 1 0.3425 -4.7044 -0.8099 13 6 0.3399 -4.9140 1.3583 14 6 0.1735 -6.4127 1.6646 15 6 0.8026 -7.1769 0.4813 16 6 1.8106 -6.1710 -0.1277 17 1 2.7383 -6.1552 0.4444 18 7 2.0752 -6.4876 -1.5334 19 6 3.1018 -7.2975 -1.8600 20 8 3.8069 -7.7637 -0.9903 21 6 3.3737 -7.6237 -3.3059 22 6 4.5845 -8.5541 -3.4000 23 6 4.8601 -8.8858 -4.8679 24 7 6.0200 -9.7763 -4.9579 25 6 5.8379 -11.1212 -4.9214 26 6 6.8939 -11.9640 -5.0024 27 6 8.1921 -11.4494 -5.1259 28 6 8.3731 -10.0979 -5.1625 29 6 7.2540 -9.2516 -5.0815 30 8 7.4011 -8.0405 -5.1184 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3881 -0.0005 33 1 2.6853 -3.7150 0.8879 34 1 2.6840 -3.7142 -0.8921 35 1 0.9398 -4.4386 2.1344 36 1 -0.6371 -4.4351 1.2950 37 1 0.6925 -6.6647 2.5895 38 1 -0.8843 -6.6610 1.7508 39 1 0.0393 -7.4423 -0.2503 40 1 1.3199 -8.0688 0.8349 41 1 1.5115 -6.1145 -2.2289 42 1 3.5793 -6.7039 -3.8535 43 1 2.5022 -8.1162 -3.7373 44 1 4.3793 -9.4740 -2.8523 45 1 5.4558 -8.0613 -2.9686 46 1 5.0652 -7.9662 -5.4159 47 1 3.9887 -9.3789 -5.2988 48 1 4.8400 -11.5228 -4.8259 49 1 6.7365 -13.0320 -4.9718 50 1 9.0397 -12.1156 -5.1906 51 1 9.3654 -9.6826 -5.2577 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568532751.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:39 Heat of formation + Delta-G solvation = -72.843962 kcal Electronic energy + Delta-G solvation = -29607.191015 eV Core-core repulsion = 25505.185484 eV Total energy + Delta-G solvation = -4102.005531 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.29413 -41.05876 -39.27045 -37.96375 -36.51735 -36.28774 -34.73916 -33.71238 -33.32604 -30.78525 -30.22322 -29.39513 -27.80084 -26.31524 -24.93268 -24.30646 -23.83227 -22.70562 -21.59255 -21.55284 -20.59751 -19.27795 -18.63976 -18.26017 -17.79339 -17.58431 -17.18253 -16.75173 -16.66534 -16.58186 -16.06775 -15.67363 -15.29578 -15.20741 -15.06839 -14.99188 -14.94580 -14.68352 -14.23234 -13.93990 -13.57399 -13.33487 -13.20564 -13.13955 -13.01397 -12.86756 -12.81341 -12.69069 -12.56067 -12.34223 -12.13891 -12.07290 -11.91336 -11.82647 -11.67320 -11.60782 -11.27676 -11.10321 -10.98680 -10.98065 -10.84571 -9.99662 -9.02910 -8.94384 -7.98883 -5.27147 -0.04811 0.94761 1.44551 1.44668 1.55110 1.65753 1.68375 2.25749 2.52425 2.71698 3.33898 3.45690 3.66272 3.68115 3.69885 3.78963 3.87619 3.97023 4.01269 4.15286 4.17847 4.29228 4.32666 4.41781 4.43997 4.48169 4.49648 4.52550 4.55588 4.59362 4.66587 4.69023 4.73049 4.94767 5.01695 5.01717 5.09509 5.13678 5.17577 5.23173 5.24737 5.26931 5.30071 5.42694 5.44396 5.49035 5.62622 5.70660 6.13252 6.23955 6.59891 7.01778 7.29406 7.30921 8.05183 8.31359 9.24247 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011725 B = 0.001945 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.435897 B =14390.973138 C =16283.254206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.070 4.070 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.248 4.248 8 H 0.067 0.933 9 N -0.738 5.738 10 C 0.162 3.838 11 C -0.090 4.090 12 H 0.087 0.913 13 C -0.112 4.112 14 C -0.114 4.114 15 C -0.119 4.119 16 C 0.150 3.850 17 H 0.068 0.932 18 N -0.711 5.711 19 C 0.508 3.492 20 O -0.590 6.590 21 C -0.129 4.129 22 C -0.108 4.108 23 C 0.090 3.910 24 N -0.494 5.494 25 C 0.135 3.865 26 C -0.236 4.236 27 C 0.006 3.994 28 C -0.291 4.291 29 C 0.489 3.511 30 O -0.616 6.616 31 H 0.253 0.747 32 H 0.377 0.623 33 H 0.006 0.994 34 H 0.011 0.989 35 H 0.048 0.952 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.415 0.585 42 H 0.106 0.894 43 H 0.144 0.856 44 H 0.080 0.920 45 H 0.030 0.970 46 H 0.082 0.918 47 H 0.145 0.855 48 H 0.208 0.792 49 H 0.183 0.817 50 H 0.164 0.836 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.143 -32.704 -11.954 35.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.263 4.263 3 Si 0.800 3.200 4 H -0.197 1.197 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.380 4.380 8 H 0.085 0.915 9 N -0.381 5.381 10 C 0.036 3.964 11 C -0.110 4.110 12 H 0.106 0.894 13 C -0.150 4.150 14 C -0.152 4.152 15 C -0.157 4.157 16 C 0.044 3.956 17 H 0.087 0.913 18 N -0.362 5.362 19 C 0.297 3.703 20 O -0.471 6.471 21 C -0.169 4.169 22 C -0.147 4.147 23 C -0.031 4.031 24 N -0.202 5.202 25 C 0.008 3.992 26 C -0.258 4.258 27 C -0.016 4.016 28 C -0.313 4.313 29 C 0.294 3.706 30 O -0.505 6.505 31 H 0.061 0.939 32 H 0.210 0.790 33 H 0.024 0.976 34 H 0.029 0.971 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.252 0.748 42 H 0.124 0.876 43 H 0.162 0.838 44 H 0.098 0.902 45 H 0.049 0.951 46 H 0.101 0.899 47 H 0.163 0.837 48 H 0.225 0.775 49 H 0.200 0.800 50 H 0.181 0.819 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.857 -32.141 -11.366 34.436 hybrid contribution 0.341 1.962 0.079 1.993 sum 5.197 -30.179 -11.288 32.637 Atomic orbital electron populations 1.69798 1.06320 1.26059 1.59251 1.25504 0.96459 1.00821 1.03527 0.85120 0.77996 0.79998 0.76919 1.19722 1.21629 1.21756 1.19602 0.91241 0.85643 1.41546 0.91514 1.42461 1.05612 1.00739 1.89265 1.20770 0.93712 0.85253 0.96699 1.22267 0.96887 0.92499 0.99300 0.89430 1.22031 1.00143 0.97265 0.95604 1.22058 1.01868 0.93107 0.98159 1.22610 0.97817 0.97339 0.97958 1.21823 0.97958 0.93464 0.82399 0.91343 1.45950 1.32370 1.49254 1.08613 1.21286 0.79028 0.77517 0.92507 1.90691 1.49370 1.54270 1.52755 1.21597 1.01039 1.02633 0.91639 1.21499 0.97193 1.00345 0.95648 1.22191 0.87712 0.95919 0.97301 1.45619 1.08998 1.08277 1.57342 1.22852 1.03643 0.80699 0.91987 1.21213 0.90971 1.02309 1.11337 1.21874 0.99411 0.94074 0.86249 1.22114 0.98320 0.95274 1.15573 1.17661 0.84446 0.89050 0.79468 1.90935 1.85818 1.16908 1.56794 0.93856 0.79020 0.97559 0.97062 0.93328 0.91817 0.91556 0.89813 0.89495 0.91546 0.74836 0.87597 0.83840 0.90172 0.95120 0.89929 0.83705 0.77528 0.80015 0.81879 0.84522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.90 13.06 21.65 0.28 -58.62 16 2 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 3 Si 0.97 47.22 29.55 68.60 2.03 49.24 16 4 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 7 C -0.25 -14.33 9.99 84.03 0.84 -13.49 16 8 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 9 N -0.74 -38.02 5.49 -343.44 -1.89 -39.91 16 10 C 0.16 6.77 5.59 86.38 0.48 7.25 16 11 C -0.09 -2.79 2.51 -9.71 -0.02 -2.81 16 12 H 0.09 2.58 8.02 -2.39 -0.02 2.56 16 13 C -0.11 -3.33 6.23 31.32 0.20 -3.14 16 14 C -0.11 -2.54 6.80 31.32 0.21 -2.33 16 15 C -0.12 -2.55 6.51 31.67 0.21 -2.34 16 16 C 0.15 4.00 2.69 46.29 0.12 4.13 16 17 H 0.07 2.26 7.46 -2.39 -0.02 2.24 16 18 N -0.71 -15.75 5.18 -436.39 -2.26 -18.01 16 19 C 0.51 12.12 7.83 87.66 0.69 12.81 16 20 O -0.59 -19.66 15.63 -3.05 -0.05 -19.71 16 21 C -0.13 -1.83 5.70 29.84 0.17 -1.66 16 22 C -0.11 -1.86 4.83 30.59 0.15 -1.72 16 23 C 0.09 1.12 5.34 86.38 0.46 1.58 16 24 N -0.49 -7.70 2.58 -650.97 -1.68 -9.39 16 25 C 0.13 0.88 10.28 83.42 0.86 1.74 16 26 C -0.24 -1.30 10.01 22.08 0.22 -1.08 16 27 C 0.01 0.06 10.10 22.32 0.23 0.28 16 28 C -0.29 -5.58 9.99 22.40 0.22 -5.36 16 29 C 0.49 12.23 7.41 84.82 0.63 12.86 16 30 O -0.62 -21.91 16.63 -5.51 -0.09 -22.00 16 31 H 0.25 14.88 8.31 -92.70 -0.77 14.11 16 32 H 0.38 20.16 7.63 -92.71 -0.71 19.45 16 33 H 0.01 0.29 7.96 -2.38 -0.02 0.27 16 34 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.05 1.65 7.72 -2.38 -0.02 1.63 16 36 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.41 7.00 8.57 -92.71 -0.79 6.21 16 42 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.08 1.28 8.10 -2.39 -0.02 1.26 16 45 H 0.03 0.84 8.10 -2.39 -0.02 0.82 16 46 H 0.08 1.43 7.38 -2.39 -0.02 1.41 16 47 H 0.15 0.30 8.01 -2.39 -0.02 0.28 16 48 H 0.21 -0.62 8.04 -2.91 -0.02 -0.64 16 49 H 0.18 -0.32 8.06 -2.91 -0.02 -0.34 16 50 H 0.16 0.56 8.06 -2.91 -0.02 0.54 16 51 H 0.14 2.67 8.06 -2.92 -0.02 2.65 16 Total: -1.00 -89.06 419.19 1.89 -87.16 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: -0.57 Total: 28.14 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 6.13 Total: 3.09 kcal Atomic # 7 Polarization: -120.37 SS G_CDS: -5.55 Total: -125.91 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -0.14 Total: -41.72 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.24 kcal Total: -89.06 1.89 -87.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568532751.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.318 kcal (2) G-P(sol) polarization free energy of solvation -89.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds