Wall clock time and date at job start Wed Apr 1 2020 04:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86802 * 120.00089 * 2 1 4 4 H 1.48505 * 109.46954 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46874 * 299.99321 * 3 2 1 6 6 H 1.48493 * 109.47567 * 59.99586 * 3 2 1 7 7 C 1.38956 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99878 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99691 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99750 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00241 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00005 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47275 * 179.97438 * 12 10 9 14 14 C 1.48716 * 111.01374 * 80.19583 * 13 12 10 15 15 C 1.54380 * 104.51579 * 158.96837 * 14 13 12 16 16 C 1.54257 * 105.14971 * 336.26490 * 15 14 13 17 17 C 1.48567 * 110.99998 * 195.70798 * 13 12 10 18 18 H 1.08998 * 110.50928 * 319.78617 * 17 13 12 19 19 C 1.52998 * 110.41344 * 82.18040 * 17 13 12 20 20 C 1.53003 * 109.46744 * 180.77756 * 19 17 13 21 21 C 1.52999 * 109.46524 * 184.65535 * 20 19 17 22 22 N 1.46500 * 109.46775 * 180.02562 * 21 20 19 23 23 C 1.34778 * 120.00205 * 179.97438 * 22 21 20 24 24 O 1.21614 * 119.99607 * 0.02562 * 23 22 21 25 25 C 1.43203 * 120.00480 * 179.97438 * 23 22 21 26 26 C 9.67960 * 121.58027 * 227.03035 * 13 1 2 27 27 C 9.69862 * 114.09012 * 228.91852 * 16 1 2 28 28 C 1.53003 * 117.50214 * 218.62130 * 27 26 25 29 29 C 1.53010 * 117.50010 * 149.96256 * 27 26 25 30 30 H 0.97006 * 119.99632 * 0.02562 * 1 2 3 31 31 H 0.97004 * 120.00475 * 359.97438 * 9 7 2 32 32 H 1.09008 * 109.47082 * 59.99563 * 12 10 9 33 33 H 1.08999 * 109.47484 * 299.99818 * 12 10 9 34 34 H 1.09004 * 110.39126 * 40.24605 * 14 13 12 35 35 H 1.08992 * 110.51134 * 277.75056 * 14 13 12 36 36 H 1.09010 * 110.32375 * 217.32146 * 15 14 13 37 37 H 1.08996 * 110.32645 * 95.21821 * 15 14 13 38 38 H 1.09006 * 110.32293 * 118.84673 * 16 15 14 39 39 H 1.08998 * 110.32595 * 241.05359 * 16 15 14 40 40 H 1.08997 * 109.47250 * 300.77872 * 19 17 13 41 41 H 1.08993 * 109.46809 * 60.77886 * 19 17 13 42 42 H 1.08995 * 109.47298 * 304.65477 * 20 19 17 43 43 H 1.08996 * 109.47098 * 64.65711 * 20 19 17 44 44 H 1.09002 * 109.47212 * 299.99559 * 21 20 19 45 45 H 1.08996 * 109.47290 * 60.00293 * 21 20 19 46 46 H 0.97003 * 120.00515 * 0.02562 * 22 21 20 47 47 H 1.09004 * 115.55258 * 4.29671 * 27 26 25 48 48 H 1.09001 * 117.49330 * 0.02562 * 28 27 26 49 49 H 1.08995 * 117.50032 * 145.02065 * 28 27 26 50 50 H 1.08996 * 117.49978 * 214.98089 * 29 27 26 51 51 H 1.09002 * 117.49394 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8894 2.3965 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8629 0.0011 13 7 2.1983 -5.9795 0.0004 14 6 2.7255 -6.2312 1.3680 15 6 3.2421 -7.6853 1.3219 16 6 2.4565 -8.3561 0.1763 17 6 1.5290 -7.2518 -0.3746 18 1 0.5444 -7.3163 0.0885 19 6 1.4104 -7.3642 -1.8958 20 6 0.7018 -8.6713 -2.2569 21 6 0.6862 -8.8396 -3.7775 22 7 0.0072 -10.0909 -4.1232 23 6 -0.1271 -10.4500 -5.4153 24 8 0.3159 -9.7356 -6.2942 25 6 -0.7903 -11.6734 -5.7534 26 6 -1.3281 -12.6771 -6.0330 27 6 -2.0093 -13.9344 -6.3814 28 6 -1.4995 -15.2194 -5.7256 29 6 -1.2266 -14.9563 -7.2087 30 1 -0.4850 0.8401 -0.0004 31 1 0.3533 -2.3906 0.0005 32 1 0.6166 -4.9208 -0.8886 33 1 0.6174 -4.9205 0.8913 34 1 1.9292 -6.1339 2.1059 35 1 3.5413 -5.5451 1.5950 36 1 3.0383 -8.1896 2.2666 37 1 4.3107 -7.7009 1.1081 38 1 3.1395 -8.6994 -0.6009 39 1 1.8672 -9.1896 0.5586 40 1 0.8351 -6.5213 -2.2787 41 1 2.4060 -7.3560 -2.3394 42 1 1.2320 -9.5091 -1.8040 43 1 -0.3219 -8.6447 -1.8837 44 1 0.1559 -8.0018 -4.2303 45 1 1.7099 -8.8662 -4.1507 46 1 -0.3465 -10.6606 -3.4223 47 1 -3.0808 -13.8536 -6.5643 48 1 -0.6599 -15.1334 -5.0359 49 1 -2.2356 -15.9839 -5.4774 50 1 -1.7833 -15.5478 -7.9354 51 1 -0.2074 -14.6971 -7.4953 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663060243.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:47 Heat of formation + Delta-G solvation = 0.191673 kcal Electronic energy + Delta-G solvation = -28554.840334 eV Core-core repulsion = 24456.001865 eV Total energy + Delta-G solvation = -4098.838468 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.99425 -39.31942 -38.15623 -37.64547 -35.97426 -33.90467 -33.55864 -32.84123 -31.95056 -31.07610 -29.11327 -26.69172 -25.99355 -24.51442 -24.04264 -23.05676 -22.35312 -21.92262 -20.88710 -19.91457 -19.15126 -18.95671 -17.82322 -17.15143 -16.55265 -16.19242 -15.88939 -15.74068 -15.54623 -15.12540 -14.71687 -14.57452 -14.42534 -14.33468 -13.76753 -13.59819 -13.18684 -13.09866 -12.79438 -12.66222 -12.49088 -12.19561 -12.15680 -12.07978 -11.81147 -11.65783 -11.60030 -11.39187 -11.15728 -11.11130 -11.05175 -10.80531 -10.69632 -10.63328 -10.48022 -10.38662 -10.30860 -10.21742 -10.17838 -9.46111 -9.45704 -8.47993 -7.95619 -7.89741 -6.37186 -3.77542 1.16949 1.70064 2.63757 3.14846 3.19479 3.29648 3.32527 3.37046 3.67979 3.96070 4.01308 4.14705 4.26228 4.30031 4.41531 4.57693 4.62951 4.81173 4.84464 4.96461 4.98760 5.01620 5.07599 5.21032 5.24610 5.30421 5.32314 5.38049 5.43786 5.46894 5.49418 5.51195 5.66132 5.70908 5.79242 5.81057 5.84899 5.91611 5.99903 6.06071 6.15513 6.24870 6.27755 6.37171 6.42216 6.76995 7.04477 7.18212 7.28447 7.59760 7.75971 8.11819 8.67779 9.23761 9.60477 10.13114 10.80881 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014269 B = 0.001534 C = 0.001423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.791534 B =18243.950888 C =19667.570547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.296 4.296 8 H 0.103 0.897 9 N -0.568 5.568 10 C 0.447 3.553 11 O -0.575 6.575 12 C 0.034 3.966 13 N -0.479 5.479 14 C 0.038 3.962 15 C -0.124 4.124 16 C -0.117 4.117 17 C 0.061 3.939 18 H 0.049 0.951 19 C -0.102 4.102 20 C -0.129 4.129 21 C 0.118 3.882 22 N -0.717 5.717 23 C 0.631 3.369 24 O -0.520 6.520 25 C -0.217 4.217 26 C -0.052 4.052 27 C -0.067 4.067 28 C -0.159 4.159 29 C -0.160 4.160 30 H 0.270 0.730 31 H 0.391 0.609 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.037 0.963 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.404 0.596 47 H 0.137 0.863 48 H 0.101 0.899 49 H 0.109 0.891 50 H 0.109 0.891 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.338 -30.692 -5.320 31.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.755 3.245 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.426 4.426 8 H 0.121 0.879 9 N -0.206 5.206 10 C 0.232 3.768 11 O -0.458 6.458 12 C -0.098 4.098 13 N -0.203 5.203 14 C -0.089 4.089 15 C -0.162 4.162 16 C -0.155 4.155 17 C -0.048 4.048 18 H 0.067 0.933 19 C -0.141 4.141 20 C -0.167 4.167 21 C -0.005 4.005 22 N -0.368 5.368 23 C 0.418 3.582 24 O -0.396 6.396 25 C -0.220 4.220 26 C -0.055 4.055 27 C -0.085 4.085 28 C -0.196 4.196 29 C -0.197 4.197 30 H 0.080 0.920 31 H 0.224 0.776 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.238 0.762 47 H 0.155 0.845 48 H 0.119 0.881 49 H 0.127 0.873 50 H 0.127 0.873 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.864 -29.804 -6.312 30.851 hybrid contribution -1.280 0.571 0.921 1.677 sum -6.144 -29.233 -5.391 30.354 Atomic orbital electron populations 1.69622 1.05917 1.27915 1.51083 1.25238 0.95613 0.99632 0.97523 0.85820 0.79733 0.81266 0.77647 1.19238 1.20793 1.20843 1.19740 0.93357 0.82244 1.47234 0.87931 1.41873 1.09111 1.04593 1.65000 1.19731 0.88420 0.84436 0.84199 1.90513 1.13672 1.86989 1.54602 1.22068 0.94137 0.92070 1.01517 1.65027 1.30591 1.01332 1.23369 1.23144 1.00006 0.96485 0.89293 1.22292 1.00677 0.95323 0.97953 1.22335 0.98065 0.96878 0.98213 1.22648 0.96115 0.90574 0.95473 0.93329 1.21409 1.01726 0.96038 0.94908 1.21799 1.01747 0.99412 0.93765 1.21528 0.98001 0.85137 0.95857 1.45873 1.59345 1.24812 1.06737 1.14652 0.78640 0.81901 0.83054 1.90895 1.48196 1.52509 1.48041 1.20596 1.02273 0.95418 1.03712 1.21301 0.93905 0.92794 0.97489 1.18935 0.98697 0.83553 1.07316 1.23130 1.03719 0.96604 0.96177 1.23139 1.01775 1.00256 0.94551 0.92028 0.77609 0.89536 0.93190 0.94484 0.89049 0.91847 0.91077 0.90943 0.91817 0.91279 0.90402 0.90983 0.91264 0.90701 0.90689 0.76182 0.84514 0.88071 0.87276 0.87276 0.88020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.36 29.55 -169.99 -5.02 16.34 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 9 N -0.57 -14.61 5.29 -10.97 -0.06 -14.67 16 10 C 0.45 10.72 7.69 -10.98 -0.08 10.63 16 11 O -0.57 -15.84 15.28 5.55 0.08 -15.75 16 12 C 0.03 0.61 5.31 -4.98 -0.03 0.58 16 13 N -0.48 -7.87 4.56 -223.43 -1.02 -8.89 16 14 C 0.04 0.59 6.09 -2.09 -0.01 0.58 16 15 C -0.12 -1.45 6.99 -25.35 -0.18 -1.63 16 16 C -0.12 -1.20 5.56 -25.35 -0.14 -1.34 16 17 C 0.06 0.73 2.30 -66.07 -0.15 0.57 16 18 H 0.05 0.55 8.00 -51.93 -0.42 0.14 16 19 C -0.10 -1.10 4.83 -26.73 -0.13 -1.23 16 20 C -0.13 -0.99 5.23 -26.73 -0.14 -1.13 16 21 C 0.12 1.06 5.67 -4.04 -0.02 1.04 16 22 N -0.72 -6.10 5.55 -62.77 -0.35 -6.45 16 23 C 0.63 7.34 7.65 -14.33 -0.11 7.23 16 24 O -0.52 -8.18 17.09 5.26 0.09 -8.09 16 25 C -0.22 -2.21 13.61 -38.85 -0.53 -2.74 16 26 C -0.05 -0.44 13.46 -37.15 -0.50 -0.94 16 27 C -0.07 -0.34 6.21 -93.41 -0.58 -0.92 16 28 C -0.16 -0.53 10.21 -26.69 -0.27 -0.81 16 29 C -0.16 -0.61 10.21 -26.69 -0.27 -0.88 16 30 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 32 H 0.09 1.41 7.06 -51.92 -0.37 1.04 16 33 H 0.05 0.82 7.64 -51.93 -0.40 0.43 16 34 H 0.04 0.54 7.68 -51.93 -0.40 0.14 16 35 H 0.09 1.66 7.66 -51.93 -0.40 1.26 16 36 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.72 7.81 -51.93 -0.41 0.32 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.82 7.25 -51.93 -0.38 0.44 16 41 H 0.08 0.92 8.07 -51.93 -0.42 0.51 16 42 H 0.07 0.47 7.31 -51.93 -0.38 0.09 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.40 2.29 8.44 -40.82 -0.34 1.95 16 47 H 0.14 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 50 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 51 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 427.74 15.07 6.45 6.45 Total: -1.00 -35.12 427.74 -10.88 -46.00 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -8.38 Total: 8.23 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -3.39 Total: 0.99 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.70 Total: -54.16 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: 0.17 Total: -23.84 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.45 Total: 6.45 kcal Total: -35.12 -10.88 -46.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663060243.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.189 kcal (2) G-P(sol) polarization free energy of solvation -35.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds