Wall clock time and date at job start Wed Apr 1 2020 04:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99521 * 2 1 4 4 H 1.48496 * 109.47091 * 271.21572 * 3 2 1 5 5 H 1.48500 * 109.47568 * 31.21883 * 3 2 1 6 6 H 1.48499 * 109.46734 * 151.21726 * 3 2 1 7 7 C 1.38805 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00531 * 351.02396 * 7 2 1 9 9 N 1.36936 * 119.99834 * 171.02571 * 7 2 1 10 10 C 1.47420 * 125.65046 * 305.58222 * 9 7 2 11 11 C 1.54908 * 104.83790 * 155.90808 * 10 9 7 12 12 C 1.55161 * 101.57985 * 37.00978 * 11 10 9 13 13 C 1.47020 * 125.64934 * 125.62746 * 9 7 2 14 14 H 1.09010 * 109.88297 * 300.44050 * 13 9 7 15 15 C 1.52998 * 109.88606 * 61.45093 * 13 9 7 16 16 C 1.53007 * 109.47051 * 289.66938 * 15 13 9 17 17 C 1.52995 * 109.47164 * 185.63597 * 16 15 13 18 18 N 1.46504 * 109.46954 * 180.02562 * 17 16 15 19 19 C 1.34777 * 119.99843 * 179.97438 * 18 17 16 20 20 O 1.21278 * 120.00196 * 0.02562 * 19 18 17 21 21 C 1.50698 * 119.99845 * 180.02562 * 19 18 17 22 22 O 1.42899 * 109.47241 * 180.02562 * 21 19 18 23 23 C 1.42901 * 114.00191 * 180.02562 * 22 21 19 24 24 C 1.50703 * 109.46999 * 180.02562 * 23 22 21 25 25 C 1.38656 * 120.78781 * 269.71367 * 24 23 22 26 26 C 1.38205 * 119.16173 * 179.79814 * 25 24 23 27 27 N 1.31871 * 120.76128 * 0.49078 * 26 25 24 28 28 C 1.31869 * 121.72912 * 359.74321 * 27 26 25 29 29 C 1.38209 * 120.76329 * 0.02562 * 28 27 26 30 30 H 0.96998 * 120.00496 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.36487 * 37.06722 * 10 9 7 32 32 H 1.08999 * 110.46308 * 274.79708 * 10 9 7 33 33 H 1.08996 * 111.01009 * 155.08257 * 11 10 9 34 34 H 1.09006 * 111.00197 * 278.93985 * 11 10 9 35 35 H 1.08997 * 110.72044 * 82.86067 * 12 11 10 36 36 H 1.08999 * 110.72247 * 206.14021 * 12 11 10 37 37 H 1.08998 * 109.46981 * 49.66743 * 15 13 9 38 38 H 1.09004 * 109.47583 * 169.67402 * 15 13 9 39 39 H 1.08999 * 109.47518 * 305.64078 * 16 15 13 40 40 H 1.09008 * 109.46733 * 65.63404 * 16 15 13 41 41 H 1.08999 * 109.47192 * 299.99837 * 17 16 15 42 42 H 1.09000 * 109.46872 * 60.00487 * 17 16 15 43 43 H 0.96994 * 119.99998 * 0.02562 * 18 17 16 44 44 H 1.08999 * 109.47529 * 300.00392 * 21 19 18 45 45 H 1.09000 * 109.47025 * 60.00498 * 21 19 18 46 46 H 1.08997 * 109.47032 * 299.99561 * 23 22 21 47 47 H 1.08995 * 109.47360 * 60.00001 * 23 22 21 48 48 H 1.07998 * 120.41779 * 0.02562 * 25 24 23 49 49 H 1.07992 * 119.62049 * 180.20809 * 26 25 24 50 50 H 1.07998 * 119.62058 * 180.02562 * 28 27 26 51 51 H 1.07997 * 120.41787 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4718 2.0613 -1.3997 5 1 1.4607 2.6452 0.7256 6 1 3.5603 1.4330 0.6741 7 6 2.0102 -1.2021 -0.0005 8 1 1.4803 -2.1318 0.1450 9 7 3.3670 -1.2092 -0.1855 10 6 4.0830 -0.5943 -1.3180 11 6 5.5117 -0.3234 -0.7840 12 6 5.7489 -1.5655 0.1151 13 6 4.3509 -1.8322 0.7119 14 1 4.2808 -1.3877 1.7048 15 6 4.0969 -3.3385 0.7974 16 6 2.8035 -3.5943 1.5739 17 6 2.6223 -5.0993 1.7811 18 7 1.3836 -5.3442 2.5241 19 6 1.0158 -6.6057 2.8238 20 8 1.7105 -7.5381 2.4788 21 6 -0.2586 -6.8577 3.5875 22 8 -0.4279 -8.2634 3.7812 23 6 -1.6134 -8.6127 4.4987 24 6 -1.6892 -10.1107 4.6445 25 6 -2.3307 -10.8852 3.6899 26 6 -2.3766 -12.2565 3.8552 27 7 -1.8280 -12.8275 4.9098 28 6 -1.2141 -12.1222 5.8396 29 6 -1.1244 -10.7466 5.7395 30 1 -0.4851 0.8400 -0.0004 31 1 3.6028 0.3403 -1.6079 32 1 4.1181 -1.2803 -2.1643 33 1 6.2336 -0.2881 -1.5999 34 1 5.5419 0.5949 -0.1975 35 1 6.0822 -2.4151 -0.4810 36 1 6.4678 -1.3399 0.9027 37 1 4.0042 -3.7489 -0.2081 38 1 4.9298 -3.8190 1.3107 39 1 2.8572 -3.0980 2.5428 40 1 1.9575 -3.2006 1.0104 41 1 2.5685 -5.5956 0.8121 42 1 3.4682 -5.4929 2.3446 43 1 0.8279 -4.5986 2.7996 44 1 -0.2057 -6.3616 4.5566 45 1 -1.1041 -6.4639 3.0235 46 1 -1.5890 -8.1526 5.4865 47 1 -2.4868 -8.2557 3.9530 48 1 -2.7855 -10.4229 2.8263 49 1 -2.8713 -12.8671 3.1146 50 1 -0.7763 -12.6252 6.6891 51 1 -0.6207 -10.1744 6.5044 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663115565.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:39 Heat of formation + Delta-G solvation = -28.010251 kcal Electronic energy + Delta-G solvation = -29215.844851 eV Core-core repulsion = 25115.783456 eV Total energy + Delta-G solvation = -4100.061396 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.51505 -39.69320 -38.15401 -37.75420 -35.27877 -33.55267 -32.66223 -32.58325 -31.54376 -29.95344 -29.43594 -27.93796 -26.47029 -24.72640 -23.80745 -23.79926 -22.36709 -21.35805 -20.58240 -20.21249 -19.29094 -17.64623 -17.22005 -17.04629 -16.85854 -16.55084 -16.23061 -16.04020 -15.91398 -15.39908 -15.04295 -14.56392 -14.20255 -14.14819 -14.06493 -13.93233 -13.42335 -13.11510 -12.97689 -12.60221 -12.57684 -12.35940 -12.10438 -12.04750 -11.97304 -11.84994 -11.35718 -11.21623 -10.94329 -10.82550 -10.61867 -10.31330 -10.16287 -10.09132 -10.03755 -9.99039 -9.90799 -9.82621 -9.60995 -9.47539 -9.40966 -8.90643 -8.57016 -6.49110 -6.02930 -3.74164 0.78222 0.81201 2.64852 2.77061 3.28017 3.39366 3.47102 3.47810 3.86721 4.14308 4.32850 4.39970 4.45713 4.66579 4.73608 4.77488 4.89302 4.92652 4.98025 5.02499 5.03406 5.12873 5.25645 5.27678 5.44439 5.45331 5.52185 5.56499 5.60259 5.63276 5.82376 5.94970 6.00964 6.04964 6.14768 6.18114 6.31527 6.34012 6.34475 6.43717 6.49516 6.58838 6.65271 6.71432 6.77144 6.89542 7.00441 7.09076 7.59360 7.62931 8.04456 8.28123 8.43285 8.81909 9.57204 10.30017 11.05083 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019603 B = 0.001646 C = 0.001561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.996328 B =17004.492593 C =17935.389194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.044 3.956 3 Si 0.892 3.108 4 H -0.286 1.286 5 H -0.302 1.302 6 H -0.264 1.264 7 C -0.255 4.255 8 H 0.085 0.915 9 N -0.602 5.602 10 C 0.118 3.882 11 C -0.139 4.139 12 C -0.126 4.126 13 C 0.154 3.846 14 H 0.039 0.961 15 C -0.112 4.112 16 C -0.142 4.142 17 C 0.122 3.878 18 N -0.722 5.722 19 C 0.511 3.489 20 O -0.527 6.527 21 C 0.042 3.958 22 O -0.356 6.356 23 C 0.098 3.902 24 C -0.044 4.044 25 C -0.150 4.150 26 C 0.096 3.904 27 N -0.483 5.483 28 C 0.095 3.905 29 C -0.151 4.151 30 H 0.264 0.736 31 H 0.040 0.960 32 H 0.027 0.973 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.060 0.940 40 H 0.109 0.891 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.405 0.595 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.138 0.862 49 H 0.158 0.842 50 H 0.157 0.843 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.662 -14.507 10.291 17.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.158 4.158 3 Si 0.722 3.278 4 H -0.213 1.213 5 H -0.230 1.230 6 H -0.189 1.189 7 C -0.383 4.383 8 H 0.102 0.898 9 N -0.329 5.329 10 C -0.007 4.007 11 C -0.177 4.177 12 C -0.164 4.164 13 C 0.048 3.952 14 H 0.057 0.943 15 C -0.152 4.152 16 C -0.179 4.179 17 C -0.001 4.001 18 N -0.375 5.375 19 C 0.295 3.705 20 O -0.403 6.403 21 C -0.038 4.038 22 O -0.274 6.274 23 C 0.022 3.978 24 C -0.052 4.052 25 C -0.170 4.170 26 C -0.061 4.061 27 N -0.193 5.193 28 C -0.062 4.062 29 C -0.171 4.171 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.127 0.873 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.239 0.761 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.155 0.845 49 H 0.175 0.825 50 H 0.175 0.825 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.319 -16.125 10.074 19.059 hybrid contribution -0.042 2.596 0.063 2.597 sum -1.361 -13.530 10.137 16.960 Atomic orbital electron populations 1.69772 1.06073 1.27029 1.51494 1.25924 0.95140 0.98660 0.96057 0.86589 0.80302 0.83407 0.77547 1.21292 1.22997 1.18885 1.18559 0.79385 0.92787 1.47608 0.89835 1.44559 1.02170 1.65883 1.20260 1.21870 0.90566 0.96420 0.91806 1.22792 0.97926 0.98044 0.98971 1.22578 0.97231 0.97788 0.98826 1.21123 0.88198 0.91571 0.94268 0.94272 1.21842 0.95573 0.98171 0.99631 1.22197 1.02001 0.91994 1.01691 1.21521 0.84829 0.98096 0.95618 1.45975 1.26241 1.07366 1.57931 1.20130 0.86702 0.83325 0.80307 1.90724 1.54096 1.42711 1.52768 1.22273 0.97148 0.83778 1.00558 1.88082 1.41801 1.21222 1.76280 1.21376 0.88638 0.90934 0.96893 1.19974 0.95909 0.94979 0.94337 1.22124 1.00179 0.95290 0.99394 1.22790 0.95923 0.92404 0.94981 1.67669 1.08276 1.41085 1.02242 1.22782 0.95257 0.90960 0.97166 1.22101 0.99720 0.96281 0.98956 0.92573 0.94217 0.95523 0.91979 0.91921 0.91727 0.92102 0.92206 0.93456 0.92159 0.87270 0.91864 0.92333 0.76094 0.90022 0.89767 0.91605 0.91492 0.84459 0.82487 0.82531 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.95 13.97 55.49 0.78 -25.17 16 2 C 0.04 1.21 5.49 -17.43 -0.10 1.11 16 3 Si 0.89 21.69 25.33 -169.99 -4.31 17.38 16 4 H -0.29 -6.91 6.89 56.52 0.39 -6.52 16 5 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.26 -6.28 6.81 56.52 0.38 -5.89 16 7 C -0.26 -6.57 9.27 -15.06 -0.14 -6.71 16 8 H 0.08 2.25 5.25 -52.49 -0.28 1.97 16 9 N -0.60 -13.46 2.34 -162.58 -0.38 -13.84 16 10 C 0.12 2.43 6.25 -2.53 -0.02 2.42 16 11 C -0.14 -2.36 7.09 -24.58 -0.17 -2.53 16 12 C -0.13 -1.99 6.48 -24.89 -0.16 -2.15 16 13 C 0.15 2.88 3.21 -66.95 -0.21 2.67 16 14 H 0.04 0.78 8.11 -51.92 -0.42 0.35 16 15 C -0.11 -1.85 4.71 -26.73 -0.13 -1.97 16 16 C -0.14 -2.30 4.87 -26.73 -0.13 -2.43 16 17 C 0.12 1.82 5.67 -4.04 -0.02 1.80 16 18 N -0.72 -9.64 5.56 -60.30 -0.33 -9.98 16 19 C 0.51 7.34 7.91 -10.99 -0.09 7.25 16 20 O -0.53 -9.99 16.50 -14.35 -0.24 -10.22 16 21 C 0.04 0.43 6.42 36.00 0.23 0.67 16 22 O -0.36 -4.32 9.86 -55.14 -0.54 -4.86 16 23 C 0.10 0.81 6.11 36.01 0.22 1.03 16 24 C -0.04 -0.40 5.55 -104.32 -0.58 -0.98 16 25 C -0.15 -1.31 9.82 -39.44 -0.39 -1.69 16 26 C 0.10 0.85 11.18 -17.55 -0.20 0.66 16 27 N -0.48 -5.02 10.36 -13.25 -0.14 -5.16 16 28 C 0.10 0.83 11.18 -17.55 -0.20 0.64 16 29 C -0.15 -1.28 9.82 -39.44 -0.39 -1.67 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.04 0.89 4.82 -51.93 -0.25 0.64 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.10 7.85 -51.93 -0.41 0.70 16 35 H 0.06 0.94 7.86 -51.93 -0.41 0.53 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 40 H 0.11 2.13 4.48 -51.92 -0.23 1.90 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.40 4.58 8.47 -40.82 -0.35 4.23 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 47 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 48 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 49 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 50 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 51 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 410.71 15.07 6.19 6.19 Total: -1.00 -34.12 410.71 -9.70 -43.82 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -8.26 Total: 3.74 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -2.46 Total: -1.90 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.08 Total: -54.15 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.78 Total: -15.08 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.31 Total: 17.38 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.12 -9.70 -43.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663115565.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.812 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds