Wall clock time and date at job start Wed Apr 1 2020 04:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99521 * 2 1 4 4 H 1.48496 * 109.47091 * 271.21572 * 3 2 1 5 5 H 1.48500 * 109.47568 * 31.21883 * 3 2 1 6 6 H 1.48499 * 109.46734 * 151.21726 * 3 2 1 7 7 C 1.38805 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00531 * 351.02396 * 7 2 1 9 9 N 1.36936 * 119.99834 * 171.02571 * 7 2 1 10 10 C 1.47420 * 125.65046 * 305.58222 * 9 7 2 11 11 C 1.54908 * 104.83790 * 155.90808 * 10 9 7 12 12 C 1.55161 * 101.57985 * 37.00978 * 11 10 9 13 13 C 1.47020 * 125.64934 * 125.62746 * 9 7 2 14 14 H 1.09010 * 109.88297 * 300.44050 * 13 9 7 15 15 C 1.52998 * 109.88606 * 61.45093 * 13 9 7 16 16 C 1.53007 * 109.47051 * 289.66938 * 15 13 9 17 17 C 1.52995 * 109.47164 * 185.63597 * 16 15 13 18 18 N 1.46504 * 109.46954 * 180.02562 * 17 16 15 19 19 C 1.34777 * 119.99843 * 179.97438 * 18 17 16 20 20 O 1.21278 * 120.00196 * 0.02562 * 19 18 17 21 21 C 1.50698 * 119.99845 * 180.02562 * 19 18 17 22 22 O 1.42899 * 109.47241 * 180.02562 * 21 19 18 23 23 C 1.42901 * 114.00191 * 180.02562 * 22 21 19 24 24 C 1.50703 * 109.46999 * 180.02562 * 23 22 21 25 25 C 1.38656 * 120.78781 * 269.71367 * 24 23 22 26 26 C 1.38205 * 119.16173 * 179.79814 * 25 24 23 27 27 N 1.31871 * 120.76128 * 0.49078 * 26 25 24 28 28 C 1.31869 * 121.72912 * 359.74321 * 27 26 25 29 29 C 1.38209 * 120.76329 * 0.02562 * 28 27 26 30 30 H 0.96998 * 120.00496 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.36487 * 37.06722 * 10 9 7 32 32 H 1.08999 * 110.46308 * 274.79708 * 10 9 7 33 33 H 1.08996 * 111.01009 * 155.08257 * 11 10 9 34 34 H 1.09006 * 111.00197 * 278.93985 * 11 10 9 35 35 H 1.08997 * 110.72044 * 82.86067 * 12 11 10 36 36 H 1.08999 * 110.72247 * 206.14021 * 12 11 10 37 37 H 1.08998 * 109.46981 * 49.66743 * 15 13 9 38 38 H 1.09004 * 109.47583 * 169.67402 * 15 13 9 39 39 H 1.08999 * 109.47518 * 305.64078 * 16 15 13 40 40 H 1.09008 * 109.46733 * 65.63404 * 16 15 13 41 41 H 1.08999 * 109.47192 * 299.99837 * 17 16 15 42 42 H 1.09000 * 109.46872 * 60.00487 * 17 16 15 43 43 H 0.96994 * 119.99998 * 0.02562 * 18 17 16 44 44 H 1.08999 * 109.47529 * 300.00392 * 21 19 18 45 45 H 1.09000 * 109.47025 * 60.00498 * 21 19 18 46 46 H 1.08997 * 109.47032 * 299.99561 * 23 22 21 47 47 H 1.08995 * 109.47360 * 60.00001 * 23 22 21 48 48 H 1.07998 * 120.41779 * 0.02562 * 25 24 23 49 49 H 1.07992 * 119.62049 * 180.20809 * 26 25 24 50 50 H 1.07998 * 119.62058 * 180.02562 * 28 27 26 51 51 H 1.07997 * 120.41787 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4718 2.0613 -1.3997 5 1 1.4607 2.6452 0.7256 6 1 3.5603 1.4330 0.6741 7 6 2.0102 -1.2021 -0.0005 8 1 1.4803 -2.1318 0.1450 9 7 3.3670 -1.2092 -0.1855 10 6 4.0830 -0.5943 -1.3180 11 6 5.5117 -0.3234 -0.7840 12 6 5.7489 -1.5655 0.1151 13 6 4.3509 -1.8322 0.7119 14 1 4.2808 -1.3877 1.7048 15 6 4.0969 -3.3385 0.7974 16 6 2.8035 -3.5943 1.5739 17 6 2.6223 -5.0993 1.7811 18 7 1.3836 -5.3442 2.5241 19 6 1.0158 -6.6057 2.8238 20 8 1.7105 -7.5381 2.4788 21 6 -0.2586 -6.8577 3.5875 22 8 -0.4279 -8.2634 3.7812 23 6 -1.6134 -8.6127 4.4987 24 6 -1.6892 -10.1107 4.6445 25 6 -2.3307 -10.8852 3.6899 26 6 -2.3766 -12.2565 3.8552 27 7 -1.8280 -12.8275 4.9098 28 6 -1.2141 -12.1222 5.8396 29 6 -1.1244 -10.7466 5.7395 30 1 -0.4851 0.8400 -0.0004 31 1 3.6028 0.3403 -1.6079 32 1 4.1181 -1.2803 -2.1643 33 1 6.2336 -0.2881 -1.5999 34 1 5.5419 0.5949 -0.1975 35 1 6.0822 -2.4151 -0.4810 36 1 6.4678 -1.3399 0.9027 37 1 4.0042 -3.7489 -0.2081 38 1 4.9298 -3.8190 1.3107 39 1 2.8572 -3.0980 2.5428 40 1 1.9575 -3.2006 1.0104 41 1 2.5685 -5.5956 0.8121 42 1 3.4682 -5.4929 2.3446 43 1 0.8279 -4.5986 2.7996 44 1 -0.2057 -6.3616 4.5566 45 1 -1.1041 -6.4639 3.0235 46 1 -1.5890 -8.1526 5.4865 47 1 -2.4868 -8.2557 3.9530 48 1 -2.7855 -10.4229 2.8263 49 1 -2.8713 -12.8671 3.1146 50 1 -0.7763 -12.6252 6.6891 51 1 -0.6207 -10.1744 6.5044 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663115565.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:38 Heat of formation + Delta-G solvation = -50.102839 kcal Electronic energy + Delta-G solvation = -29216.802858 eV Core-core repulsion = 25115.783456 eV Total energy + Delta-G solvation = -4101.019402 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.17586 -40.77893 -39.62658 -38.63121 -36.55686 -34.59550 -34.24650 -33.87526 -32.16128 -31.69868 -30.56250 -28.98534 -27.28805 -26.35847 -25.24157 -24.43497 -23.00055 -22.82592 -21.83500 -21.48601 -20.84153 -18.90220 -18.47367 -17.86832 -17.82412 -17.71526 -17.40599 -16.99619 -16.55445 -16.51843 -16.32406 -16.05536 -15.45394 -15.14984 -14.96401 -14.75906 -14.68346 -14.52951 -14.09434 -14.03990 -13.91424 -13.63240 -13.38645 -13.21156 -13.02135 -12.95930 -12.79011 -12.49648 -12.43588 -12.41173 -12.13274 -11.89396 -11.62869 -11.39089 -11.35005 -11.10907 -10.93999 -10.79602 -10.68749 -10.60371 -10.48548 -10.11441 -10.10303 -8.37873 -8.02808 -5.77820 0.11961 0.18388 1.33142 1.40265 1.53269 1.54758 1.86099 2.45301 2.73806 3.12650 3.14088 3.46278 3.57026 3.66716 3.77406 3.83844 3.92003 4.05256 4.11202 4.17620 4.18071 4.19114 4.21558 4.26642 4.29166 4.42555 4.44149 4.49751 4.59536 4.68944 4.74740 4.82122 4.85273 4.87348 4.95093 4.97371 5.00461 5.05358 5.20070 5.24118 5.31146 5.32960 5.43870 5.45683 5.57836 5.67943 5.73984 5.95335 6.05159 6.46146 6.54254 6.98473 6.99743 7.19261 7.57409 8.37463 9.01793 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019603 B = 0.001646 C = 0.001561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.996328 B =17004.492593 C =17935.389194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.010 4.010 3 Si 0.943 3.057 4 H -0.286 1.286 5 H -0.310 1.310 6 H -0.254 1.254 7 C -0.236 4.236 8 H 0.065 0.935 9 N -0.619 5.619 10 C 0.107 3.893 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.146 3.854 14 H 0.029 0.971 15 C -0.107 4.107 16 C -0.128 4.128 17 C 0.132 3.868 18 N -0.716 5.716 19 C 0.506 3.494 20 O -0.580 6.580 21 C 0.047 3.953 22 O -0.390 6.390 23 C 0.096 3.904 24 C -0.062 4.062 25 C -0.159 4.159 26 C 0.083 3.917 27 N -0.511 5.511 28 C 0.083 3.917 29 C -0.156 4.156 30 H 0.262 0.738 31 H 0.019 0.981 32 H 0.030 0.970 33 H 0.094 0.906 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.047 0.953 42 H 0.064 0.936 43 H 0.415 0.585 44 H 0.116 0.884 45 H 0.109 0.891 46 H 0.089 0.911 47 H 0.084 0.916 48 H 0.152 0.848 49 H 0.177 0.823 50 H 0.179 0.821 51 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.072 -14.300 11.268 18.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.208 4.208 3 Si 0.773 3.227 4 H -0.213 1.213 5 H -0.238 1.238 6 H -0.177 1.177 7 C -0.366 4.366 8 H 0.082 0.918 9 N -0.346 5.346 10 C -0.017 4.017 11 C -0.169 4.169 12 C -0.154 4.154 13 C 0.041 3.959 14 H 0.047 0.953 15 C -0.147 4.147 16 C -0.166 4.166 17 C 0.008 3.992 18 N -0.369 5.369 19 C 0.293 3.707 20 O -0.459 6.459 21 C -0.032 4.032 22 O -0.309 6.309 23 C 0.021 3.979 24 C -0.070 4.070 25 C -0.178 4.178 26 C -0.073 4.073 27 N -0.221 5.221 28 C -0.073 4.073 29 C -0.176 4.176 30 H 0.071 0.929 31 H 0.037 0.963 32 H 0.048 0.952 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.252 0.748 44 H 0.134 0.866 45 H 0.126 0.874 46 H 0.107 0.893 47 H 0.102 0.898 48 H 0.169 0.831 49 H 0.194 0.806 50 H 0.196 0.804 51 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.432 -15.900 11.062 19.374 hybrid contribution -0.565 2.434 -0.264 2.513 sum -0.132 -13.466 10.797 17.261 Atomic orbital electron populations 1.69881 1.07374 1.27314 1.54503 1.26505 0.95667 1.01435 0.97187 0.85753 0.79453 0.80232 0.77299 1.21339 1.23849 1.17743 1.18596 0.81201 0.91977 1.44801 0.91753 1.44743 1.01672 1.66262 1.21911 1.22002 0.92724 0.95351 0.91623 1.22765 0.95840 0.98274 1.00037 1.22587 0.95587 0.97819 0.99426 1.21329 0.89166 0.92209 0.93228 0.95287 1.21773 0.96543 0.96939 0.99410 1.21969 1.00722 0.92694 1.01167 1.21298 0.85898 0.96772 0.95214 1.45936 1.25848 1.07865 1.57271 1.20930 0.87573 0.82538 0.79642 1.90695 1.56054 1.44142 1.55032 1.22337 0.95248 0.83695 1.01884 1.88028 1.43637 1.22092 1.77181 1.21567 0.87934 0.90418 0.97998 1.20291 0.96137 0.95849 0.94699 1.22368 1.00222 0.95356 0.99886 1.23172 0.95959 0.93005 0.95177 1.67688 1.09260 1.42031 1.03129 1.23207 0.95075 0.91454 0.97558 1.22369 0.99495 0.96389 0.99325 0.92930 0.96298 0.95176 0.88705 0.92523 0.89949 0.89421 0.93275 0.90441 0.91796 0.90755 0.93465 0.91740 0.74834 0.86633 0.87375 0.89337 0.89773 0.83054 0.80624 0.80440 0.82707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.98 13.97 21.65 0.30 -55.68 16 2 C -0.01 -0.58 5.49 84.86 0.47 -0.11 16 3 Si 0.94 45.14 25.33 68.60 1.74 46.88 16 4 H -0.29 -13.55 6.89 99.48 0.69 -12.86 16 5 H -0.31 -15.07 7.11 99.48 0.71 -14.36 16 6 H -0.25 -11.50 6.81 99.48 0.68 -10.82 16 7 C -0.24 -12.33 9.27 84.03 0.78 -11.55 16 8 H 0.07 3.60 5.25 -2.91 -0.02 3.58 16 9 N -0.62 -27.16 2.34 -668.27 -1.56 -28.72 16 10 C 0.11 4.26 6.25 86.86 0.54 4.80 16 11 C -0.13 -3.98 7.09 31.99 0.23 -3.75 16 12 C -0.12 -3.19 6.48 31.79 0.21 -2.99 16 13 C 0.15 5.13 3.21 45.34 0.15 5.27 16 14 H 0.03 1.09 8.11 -2.38 -0.02 1.07 16 15 C -0.11 -3.33 4.71 30.60 0.14 -3.19 16 16 C -0.13 -4.10 4.87 30.59 0.15 -3.96 16 17 C 0.13 3.87 5.67 86.38 0.49 4.36 16 18 N -0.72 -18.66 5.56 -463.07 -2.57 -21.24 16 19 C 0.51 14.19 7.91 87.66 0.69 14.88 16 20 O -0.58 -22.12 16.50 16.01 0.26 -21.85 16 21 C 0.05 0.88 6.42 71.24 0.46 1.33 16 22 O -0.39 -8.92 9.86 -129.94 -1.28 -10.20 16 23 C 0.10 1.40 6.11 71.24 0.44 1.84 16 24 C -0.06 -1.07 5.55 -19.67 -0.11 -1.18 16 25 C -0.16 -2.67 9.82 22.36 0.22 -2.45 16 26 C 0.08 1.46 11.18 84.68 0.95 2.41 16 27 N -0.51 -10.53 10.36 -195.85 -2.03 -12.56 16 28 C 0.08 1.42 11.18 84.68 0.95 2.36 16 29 C -0.16 -2.50 9.82 22.36 0.22 -2.28 16 30 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 31 H 0.02 0.82 4.82 -2.39 -0.01 0.81 16 32 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.06 1.80 7.85 -2.38 -0.02 1.78 16 35 H 0.08 2.01 7.86 -2.39 -0.02 1.99 16 36 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 39 H 0.06 1.98 8.12 -2.39 -0.02 1.96 16 40 H 0.07 2.97 4.48 -2.38 -0.01 2.96 16 41 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.42 9.04 8.47 -92.71 -0.79 8.25 16 44 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.09 0.85 8.10 -2.39 -0.02 0.84 16 47 H 0.08 0.90 8.10 -2.39 -0.02 0.88 16 48 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 49 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 50 H 0.18 1.99 8.06 -2.91 -0.02 1.96 16 51 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -76.50 410.71 1.91 -74.59 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.09 Total: 22.96 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 6.96 Total: 5.82 kcal Atomic # 7 Polarization: -112.33 SS G_CDS: -5.86 Total: -118.19 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -1.02 Total: -32.05 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.74 Total: 46.88 kcal Total: -76.50 1.91 -74.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663115565.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.485 kcal (2) G-P(sol) polarization free energy of solvation -76.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds