Wall clock time and date at job start Wed Apr 1 2020 04:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99961 * 2 1 4 4 H 1.48499 * 109.47118 * 270.00159 * 3 2 1 5 5 H 1.48501 * 109.47035 * 30.00266 * 3 2 1 6 6 H 1.48502 * 109.46950 * 149.99928 * 3 2 1 7 7 C 1.38814 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99808 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99731 * 359.97438 * 7 2 1 10 10 C 1.47737 * 125.82543 * 346.80883 * 9 7 2 11 11 C 1.54909 * 104.84337 * 204.25388 * 10 9 7 12 12 C 1.55160 * 101.58051 * 322.90485 * 11 10 9 13 13 C 1.47026 * 125.64389 * 166.81671 * 9 7 2 14 14 H 1.08996 * 109.88694 * 59.32179 * 13 9 7 15 15 C 1.53001 * 109.88329 * 298.30671 * 13 9 7 16 16 C 1.52994 * 109.47284 * 176.68398 * 15 13 9 17 17 C 1.53006 * 109.47069 * 185.08783 * 16 15 13 18 18 N 1.46506 * 109.46896 * 179.97438 * 17 16 15 19 19 C 1.34773 * 119.99751 * 179.97438 * 18 17 16 20 20 O 1.21277 * 120.00075 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99874 * 180.02562 * 19 18 17 22 22 O 1.42898 * 109.47232 * 180.02562 * 21 19 18 23 23 C 1.42902 * 114.00246 * 179.97438 * 22 21 19 24 24 C 1.50697 * 109.46952 * 179.97438 * 23 22 21 25 25 C 1.38657 * 120.78903 * 90.00607 * 24 23 22 26 26 C 1.38197 * 119.16076 * 180.02562 * 25 24 23 27 27 N 1.31869 * 120.76935 * 0.25514 * 26 25 24 28 28 C 1.31867 * 121.71973 * 359.47556 * 27 26 25 29 29 C 1.38199 * 120.76881 * 0.52592 * 28 27 26 30 30 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 31 31 H 1.09002 * 110.43490 * 85.37617 * 10 9 7 32 32 H 1.09008 * 110.29426 * 323.06076 * 10 9 7 33 33 H 1.09002 * 111.00344 * 204.83216 * 11 10 9 34 34 H 1.08998 * 111.03959 * 80.99923 * 11 10 9 35 35 H 1.08999 * 110.72204 * 277.14140 * 12 11 10 36 36 H 1.09000 * 110.71514 * 153.86587 * 12 11 10 37 37 H 1.09005 * 109.46601 * 56.68336 * 15 13 9 38 38 H 1.09002 * 109.47135 * 296.68335 * 15 13 9 39 39 H 1.09004 * 109.47344 * 65.08346 * 16 15 13 40 40 H 1.09004 * 109.47100 * 305.08596 * 16 15 13 41 41 H 1.09000 * 109.46896 * 60.00147 * 17 16 15 42 42 H 1.08993 * 109.46658 * 299.99592 * 17 16 15 43 43 H 0.97001 * 120.00102 * 359.97438 * 18 17 16 44 44 H 1.08999 * 109.46969 * 60.00155 * 21 19 18 45 45 H 1.09004 * 109.47126 * 300.00148 * 21 19 18 46 46 H 1.09003 * 109.46578 * 60.00167 * 23 22 21 47 47 H 1.08995 * 109.46966 * 300.00025 * 23 22 21 48 48 H 1.08005 * 120.41579 * 0.04003 * 25 24 23 49 49 H 1.08005 * 119.61401 * 179.97438 * 26 25 24 50 50 H 1.08009 * 119.61592 * 180.26523 * 28 27 26 51 51 H 1.08003 * 120.41981 * 179.72498 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1167 -2.5538 0.2733 11 6 -0.2622 -4.0162 0.7630 12 6 0.7705 -4.7491 -0.1336 13 6 1.9044 -3.7117 -0.2736 14 1 2.6943 -3.9265 0.4462 15 6 2.4711 -3.7488 -1.6943 16 6 3.1438 -5.1008 -1.9399 17 6 3.8200 -5.0921 -3.3124 18 7 4.4647 -6.3866 -3.5473 19 6 5.1262 -6.6106 -4.6999 20 8 5.1882 -5.7404 -5.5424 21 6 5.7889 -7.9422 -4.9418 22 8 6.4205 -7.9342 -6.2236 23 6 7.0827 -9.1569 -6.5530 24 6 7.7092 -9.0368 -7.9183 25 6 9.0069 -8.5709 -8.0653 26 6 9.5479 -8.4738 -9.3333 27 7 8.8434 -8.8132 -10.3951 28 6 7.6088 -9.2649 -10.2927 29 6 7.0016 -9.3890 -9.0575 30 1 -0.4850 0.8400 0.0004 31 1 -0.6971 -2.3988 -0.6362 32 1 -0.4361 -1.8598 1.0509 33 1 -1.2703 -4.3899 0.5834 34 1 0.0029 -4.1043 1.8166 35 1 0.3392 -4.9826 -1.1070 36 1 1.1331 -5.6531 0.3557 37 1 3.2042 -2.9510 -1.8139 38 1 1.6624 -3.6097 -2.4118 39 1 2.3935 -5.8909 -1.9094 40 1 3.8918 -5.2801 -1.1675 41 1 4.5703 -4.3021 -3.3428 42 1 3.0720 -4.9129 -4.0847 43 1 4.4153 -7.0824 -2.8733 44 1 5.0386 -8.7323 -4.9110 45 1 6.5371 -8.1214 -4.1696 46 1 6.3595 -9.9724 -6.5559 47 1 7.8575 -9.3609 -5.8140 48 1 9.5875 -8.2878 -7.1998 49 1 10.5579 -8.1115 -9.4563 50 1 7.0642 -9.5371 -11.1849 51 1 5.9885 -9.7553 -8.9804 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663115566.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:42 Heat of formation + Delta-G solvation = -30.391543 kcal Electronic energy + Delta-G solvation = -28703.063924 eV Core-core repulsion = 24602.899268 eV Total energy + Delta-G solvation = -4100.164656 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.62279 -39.91329 -38.09889 -37.74548 -35.51396 -33.67565 -33.00848 -32.18903 -31.63780 -29.65092 -29.17469 -27.78415 -26.53528 -24.74358 -23.90363 -23.83099 -22.48433 -21.57236 -20.76452 -20.11776 -19.14822 -17.83061 -17.29683 -17.18956 -16.83013 -16.64951 -16.31735 -16.02217 -15.69880 -15.39586 -15.02184 -14.56026 -14.31809 -14.17375 -14.16024 -14.02086 -13.78616 -13.28969 -13.02732 -12.68314 -12.32266 -12.23267 -12.05759 -11.98378 -11.91491 -11.69536 -11.46323 -11.02754 -10.82374 -10.73090 -10.57290 -10.27676 -10.26035 -10.08310 -10.00299 -9.93648 -9.91043 -9.76720 -9.60704 -9.58343 -9.56846 -9.18625 -8.56703 -6.76206 -5.71826 -3.06657 0.67640 0.71962 2.43012 2.55188 3.33484 3.41055 3.46551 3.47675 3.69773 4.05673 4.20685 4.23031 4.46836 4.50803 4.57904 4.65547 4.66348 4.73058 4.81800 4.86890 4.99368 5.15875 5.17854 5.34881 5.35741 5.45554 5.50077 5.59938 5.60521 5.72453 5.83622 5.84889 5.94830 6.01600 6.09045 6.24873 6.25416 6.32071 6.34524 6.42149 6.48816 6.57094 6.70001 6.72603 6.95655 7.17464 7.31543 7.54449 7.57120 7.64116 7.82566 8.05262 8.31477 9.22542 9.84461 10.53612 11.40343 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017184 B = 0.001468 C = 0.001388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.992743 B =19071.593378 C =20171.597716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.908 3.092 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.074 0.926 9 N -0.597 5.597 10 C 0.171 3.829 11 C -0.150 4.150 12 C -0.124 4.124 13 C 0.162 3.838 14 H 0.030 0.970 15 C -0.123 4.123 16 C -0.126 4.126 17 C 0.119 3.881 18 N -0.727 5.727 19 C 0.509 3.491 20 O -0.518 6.518 21 C 0.044 3.956 22 O -0.355 6.355 23 C 0.099 3.901 24 C -0.046 4.046 25 C -0.150 4.150 26 C 0.096 3.904 27 N -0.482 5.482 28 C 0.096 3.904 29 C -0.150 4.150 30 H 0.252 0.748 31 H 0.023 0.977 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.400 0.600 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.137 0.863 49 H 0.158 0.842 50 H 0.158 0.842 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.044 -25.188 -10.605 30.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.092 0.908 9 N -0.321 5.321 10 C 0.046 3.954 11 C -0.189 4.189 12 C -0.162 4.162 13 C 0.055 3.945 14 H 0.048 0.952 15 C -0.163 4.163 16 C -0.165 4.165 17 C -0.003 4.003 18 N -0.381 5.381 19 C 0.293 3.707 20 O -0.392 6.392 21 C -0.036 4.036 22 O -0.273 6.273 23 C 0.023 3.977 24 C -0.054 4.054 25 C -0.170 4.170 26 C -0.061 4.061 27 N -0.191 5.191 28 C -0.061 4.061 29 C -0.170 4.170 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.233 0.767 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.155 0.845 49 H 0.175 0.825 50 H 0.175 0.825 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 13.399 -24.037 -12.158 30.086 hybrid contribution -0.005 0.289 1.297 1.329 sum 13.395 -23.748 -10.860 29.349 Atomic orbital electron populations 1.69931 1.04963 1.25068 1.56602 1.24874 0.95662 0.97726 1.02018 0.86176 0.78679 0.83631 0.77634 1.21534 1.21722 1.20684 1.18966 0.90314 0.82352 1.43769 0.90775 1.44618 1.05361 1.01002 1.81118 1.21486 0.85018 0.90210 0.98644 1.23009 0.97401 0.99779 0.98704 1.22590 0.97134 0.97090 0.99387 1.20918 0.93806 0.86987 0.92822 0.95201 1.22039 1.00091 0.94289 0.99873 1.21837 0.99670 1.00256 0.94723 1.21537 0.96857 0.83834 0.98119 1.45983 1.55414 1.17743 1.18953 1.20171 0.79275 0.89009 0.82244 1.90769 1.58783 1.45693 1.43986 1.22250 0.97708 0.96429 0.87231 1.88108 1.71076 1.34548 1.33574 1.21374 0.96081 0.87417 0.92841 1.19951 0.94028 0.96789 0.94647 1.22107 0.95816 0.99512 0.99573 1.22802 0.99833 0.95638 0.87783 1.67680 1.07644 1.09937 1.33880 1.22802 0.91129 0.94959 0.97173 1.22103 1.01030 1.00821 0.93061 0.93751 0.95933 0.91004 0.92574 0.92496 0.92059 0.92670 0.91668 0.92169 0.91663 0.91717 0.91275 0.91345 0.76657 0.90032 0.90030 0.91583 0.91572 0.84515 0.82457 0.82459 0.84521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.93 10.54 55.49 0.59 -26.35 16 2 C -0.01 -0.18 5.47 -17.43 -0.10 -0.27 16 3 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.23 -6.18 9.75 -15.06 -0.15 -6.33 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.60 -14.86 3.14 -162.32 -0.51 -15.37 16 10 C 0.17 4.12 5.46 -2.36 -0.01 4.10 16 11 C -0.15 -2.78 7.09 -24.58 -0.17 -2.96 16 12 C -0.12 -2.05 5.61 -24.89 -0.14 -2.19 16 13 C 0.16 3.17 3.18 -66.95 -0.21 2.95 16 14 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 15 C -0.12 -2.12 4.69 -26.73 -0.13 -2.25 16 16 C -0.13 -1.55 5.07 -26.73 -0.14 -1.69 16 17 C 0.12 1.50 5.67 -4.04 -0.02 1.47 16 18 N -0.73 -7.15 5.56 -60.29 -0.33 -7.48 16 19 C 0.51 6.02 7.91 -10.99 -0.09 5.93 16 20 O -0.52 -8.99 16.50 -14.35 -0.24 -9.23 16 21 C 0.04 0.33 6.42 36.01 0.23 0.56 16 22 O -0.36 -3.63 9.86 -55.14 -0.54 -4.17 16 23 C 0.10 0.64 6.11 36.00 0.22 0.86 16 24 C -0.05 -0.36 5.55 -104.32 -0.58 -0.94 16 25 C -0.15 -1.12 9.82 -39.44 -0.39 -1.51 16 26 C 0.10 0.77 11.18 -17.55 -0.20 0.57 16 27 N -0.48 -4.62 10.36 -13.25 -0.14 -4.76 16 28 C 0.10 0.76 11.18 -17.55 -0.20 0.57 16 29 C -0.15 -1.12 9.82 -39.44 -0.39 -1.50 16 30 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.02 0.59 8.10 -51.93 -0.42 0.17 16 32 H 0.07 1.93 6.83 -51.92 -0.35 1.58 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.97 7.79 -51.93 -0.40 0.56 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 1.25 7.90 -51.93 -0.41 0.84 16 38 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 39 H 0.06 0.71 7.57 -51.93 -0.39 0.32 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.40 2.49 8.47 -40.82 -0.35 2.14 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.29 8.10 -51.93 -0.42 -0.13 16 47 H 0.07 0.29 8.10 -51.93 -0.42 -0.13 16 48 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 49 H 0.16 0.84 8.06 -52.48 -0.42 0.42 16 50 H 0.16 0.83 8.06 -52.48 -0.42 0.41 16 51 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 LS Contribution 419.39 15.07 6.32 6.32 Total: -1.00 -36.37 419.39 -10.96 -47.33 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -8.63 Total: -0.82 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -2.45 Total: -2.61 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.40 Total: -53.96 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.78 Total: -13.40 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -36.37 -10.96 -47.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663115566.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.936 kcal (2) G-P(sol) polarization free energy of solvation -36.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds