Wall clock time and date at job start Wed Apr 1 2020 04:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99961 * 2 1 4 4 H 1.48499 * 109.47118 * 270.00159 * 3 2 1 5 5 H 1.48501 * 109.47035 * 30.00266 * 3 2 1 6 6 H 1.48502 * 109.46950 * 149.99928 * 3 2 1 7 7 C 1.38814 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99808 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99731 * 359.97438 * 7 2 1 10 10 C 1.47737 * 125.82543 * 346.80883 * 9 7 2 11 11 C 1.54909 * 104.84337 * 204.25388 * 10 9 7 12 12 C 1.55160 * 101.58051 * 322.90485 * 11 10 9 13 13 C 1.47026 * 125.64389 * 166.81671 * 9 7 2 14 14 H 1.08996 * 109.88694 * 59.32179 * 13 9 7 15 15 C 1.53001 * 109.88329 * 298.30671 * 13 9 7 16 16 C 1.52994 * 109.47284 * 176.68398 * 15 13 9 17 17 C 1.53006 * 109.47069 * 185.08783 * 16 15 13 18 18 N 1.46506 * 109.46896 * 179.97438 * 17 16 15 19 19 C 1.34773 * 119.99751 * 179.97438 * 18 17 16 20 20 O 1.21277 * 120.00075 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99874 * 180.02562 * 19 18 17 22 22 O 1.42898 * 109.47232 * 180.02562 * 21 19 18 23 23 C 1.42902 * 114.00246 * 179.97438 * 22 21 19 24 24 C 1.50697 * 109.46952 * 179.97438 * 23 22 21 25 25 C 1.38657 * 120.78903 * 90.00607 * 24 23 22 26 26 C 1.38197 * 119.16076 * 180.02562 * 25 24 23 27 27 N 1.31869 * 120.76935 * 0.25514 * 26 25 24 28 28 C 1.31867 * 121.71973 * 359.47556 * 27 26 25 29 29 C 1.38199 * 120.76881 * 0.52592 * 28 27 26 30 30 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 31 31 H 1.09002 * 110.43490 * 85.37617 * 10 9 7 32 32 H 1.09008 * 110.29426 * 323.06076 * 10 9 7 33 33 H 1.09002 * 111.00344 * 204.83216 * 11 10 9 34 34 H 1.08998 * 111.03959 * 80.99923 * 11 10 9 35 35 H 1.08999 * 110.72204 * 277.14140 * 12 11 10 36 36 H 1.09000 * 110.71514 * 153.86587 * 12 11 10 37 37 H 1.09005 * 109.46601 * 56.68336 * 15 13 9 38 38 H 1.09002 * 109.47135 * 296.68335 * 15 13 9 39 39 H 1.09004 * 109.47344 * 65.08346 * 16 15 13 40 40 H 1.09004 * 109.47100 * 305.08596 * 16 15 13 41 41 H 1.09000 * 109.46896 * 60.00147 * 17 16 15 42 42 H 1.08993 * 109.46658 * 299.99592 * 17 16 15 43 43 H 0.97001 * 120.00102 * 359.97438 * 18 17 16 44 44 H 1.08999 * 109.46969 * 60.00155 * 21 19 18 45 45 H 1.09004 * 109.47126 * 300.00148 * 21 19 18 46 46 H 1.09003 * 109.46578 * 60.00167 * 23 22 21 47 47 H 1.08995 * 109.46966 * 300.00025 * 23 22 21 48 48 H 1.08005 * 120.41579 * 0.04003 * 25 24 23 49 49 H 1.08005 * 119.61401 * 179.97438 * 26 25 24 50 50 H 1.08009 * 119.61592 * 180.26523 * 28 27 26 51 51 H 1.08003 * 120.41981 * 179.72498 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1167 -2.5538 0.2733 11 6 -0.2622 -4.0162 0.7630 12 6 0.7705 -4.7491 -0.1336 13 6 1.9044 -3.7117 -0.2736 14 1 2.6943 -3.9265 0.4462 15 6 2.4711 -3.7488 -1.6943 16 6 3.1438 -5.1008 -1.9399 17 6 3.8200 -5.0921 -3.3124 18 7 4.4647 -6.3866 -3.5473 19 6 5.1262 -6.6106 -4.6999 20 8 5.1882 -5.7404 -5.5424 21 6 5.7889 -7.9422 -4.9418 22 8 6.4205 -7.9342 -6.2236 23 6 7.0827 -9.1569 -6.5530 24 6 7.7092 -9.0368 -7.9183 25 6 9.0069 -8.5709 -8.0653 26 6 9.5479 -8.4738 -9.3333 27 7 8.8434 -8.8132 -10.3951 28 6 7.6088 -9.2649 -10.2927 29 6 7.0016 -9.3890 -9.0575 30 1 -0.4850 0.8400 0.0004 31 1 -0.6971 -2.3988 -0.6362 32 1 -0.4361 -1.8598 1.0509 33 1 -1.2703 -4.3899 0.5834 34 1 0.0029 -4.1043 1.8166 35 1 0.3392 -4.9826 -1.1070 36 1 1.1331 -5.6531 0.3557 37 1 3.2042 -2.9510 -1.8139 38 1 1.6624 -3.6097 -2.4118 39 1 2.3935 -5.8909 -1.9094 40 1 3.8918 -5.2801 -1.1675 41 1 4.5703 -4.3021 -3.3428 42 1 3.0720 -4.9129 -4.0847 43 1 4.4153 -7.0824 -2.8733 44 1 5.0386 -8.7323 -4.9110 45 1 6.5371 -8.1214 -4.1696 46 1 6.3595 -9.9724 -6.5559 47 1 7.8575 -9.3609 -5.8140 48 1 9.5875 -8.2878 -7.1998 49 1 10.5579 -8.1115 -9.4563 50 1 7.0642 -9.5371 -11.1849 51 1 5.9885 -9.7553 -8.9804 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663115566.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:41 Heat of formation + Delta-G solvation = -54.706326 kcal Electronic energy + Delta-G solvation = -28704.118292 eV Core-core repulsion = 24602.899268 eV Total energy + Delta-G solvation = -4101.219024 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.17256 -40.78060 -39.46358 -38.61584 -36.64745 -34.69558 -34.22903 -33.67202 -32.16040 -31.27062 -30.36406 -28.79494 -27.24335 -26.55277 -25.25072 -24.43618 -22.99595 -22.72386 -21.85065 -21.71040 -20.68886 -18.73474 -18.48654 -17.89736 -17.72563 -17.42771 -17.06983 -16.91690 -16.60039 -16.52730 -16.26435 -15.98427 -15.68147 -15.26741 -15.07624 -14.76106 -14.56865 -14.35281 -13.99734 -13.92226 -13.68770 -13.57014 -13.28145 -13.05619 -12.98759 -12.78265 -12.74892 -12.65388 -12.45947 -12.23579 -11.99707 -11.81967 -11.66250 -11.51972 -11.29730 -11.15229 -10.97184 -10.76255 -10.69589 -10.65772 -10.48376 -10.13964 -10.10475 -8.77832 -7.84822 -5.19937 0.12719 0.18393 1.43524 1.45400 1.53215 1.57154 1.84757 2.49604 2.73548 3.15561 3.33594 3.57140 3.65865 3.73443 3.78335 3.85588 3.97203 4.01966 4.11880 4.17579 4.19352 4.23757 4.26280 4.32032 4.36969 4.43574 4.44819 4.46219 4.63401 4.69565 4.80180 4.83941 4.87178 4.87408 4.97792 5.00642 5.05493 5.15490 5.25594 5.32637 5.34687 5.40653 5.51280 5.53793 5.69360 5.72274 5.74369 5.80958 5.99364 6.28205 6.58202 6.98979 7.13042 7.25647 7.83188 8.50322 9.26461 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017184 B = 0.001468 C = 0.001388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.992743 B =19071.593378 C =20171.597716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.067 4.067 3 Si 0.969 3.031 4 H -0.290 1.290 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.229 4.229 8 H 0.076 0.924 9 N -0.620 5.620 10 C 0.172 3.828 11 C -0.137 4.137 12 C -0.110 4.110 13 C 0.151 3.849 14 H 0.037 0.963 15 C -0.114 4.114 16 C -0.106 4.106 17 C 0.125 3.875 18 N -0.709 5.709 19 C 0.501 3.499 20 O -0.585 6.585 21 C 0.049 3.951 22 O -0.396 6.396 23 C 0.099 3.901 24 C -0.062 4.062 25 C -0.157 4.157 26 C 0.081 3.919 27 N -0.513 5.513 28 C 0.081 3.919 29 C -0.157 4.157 30 H 0.245 0.755 31 H -0.010 1.010 32 H 0.031 0.969 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.034 0.966 38 H 0.039 0.961 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.045 0.955 42 H 0.049 0.951 43 H 0.422 0.578 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.155 0.845 49 H 0.175 0.825 50 H 0.176 0.824 51 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.061 -28.833 -9.399 33.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.798 3.202 4 H -0.218 1.218 5 H -0.221 1.221 6 H -0.193 1.193 7 C -0.359 4.359 8 H 0.094 0.906 9 N -0.345 5.345 10 C 0.047 3.953 11 C -0.176 4.176 12 C -0.148 4.148 13 C 0.045 3.955 14 H 0.055 0.945 15 C -0.155 4.155 16 C -0.144 4.144 17 C 0.001 3.999 18 N -0.363 5.363 19 C 0.288 3.712 20 O -0.465 6.465 21 C -0.029 4.029 22 O -0.315 6.315 23 C 0.024 3.976 24 C -0.070 4.070 25 C -0.177 4.177 26 C -0.075 4.075 27 N -0.223 5.223 28 C -0.075 4.075 29 C -0.176 4.176 30 H 0.054 0.946 31 H 0.008 0.992 32 H 0.050 0.950 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.260 0.740 44 H 0.136 0.864 45 H 0.135 0.865 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.172 0.828 49 H 0.192 0.808 50 H 0.193 0.807 51 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 14.441 -27.765 -10.909 33.143 hybrid contribution -0.301 1.394 0.924 1.699 sum 14.141 -26.372 -9.985 31.545 Atomic orbital electron populations 1.70145 1.06265 1.25066 1.58424 1.25644 0.96500 1.00892 1.02977 0.85206 0.77895 0.79779 0.77281 1.21775 1.22085 1.19299 1.19303 0.90700 0.83793 1.42064 0.90585 1.44942 1.05813 1.02333 1.81402 1.21295 0.84516 0.93427 0.96075 1.22877 0.99715 0.95617 0.99353 1.22589 0.94972 0.97292 0.99928 1.21232 0.95166 0.85349 0.93734 0.94535 1.21843 0.98936 0.96618 0.98075 1.21626 1.00387 0.97610 0.94765 1.21237 0.95950 0.84850 0.97868 1.45742 1.54248 1.17123 1.19217 1.21115 0.78485 0.90101 0.81452 1.90744 1.61307 1.48200 1.46206 1.22376 0.99220 0.94014 0.87332 1.88049 1.71851 1.36679 1.34932 1.21555 0.97088 0.86684 0.92319 1.20338 0.94320 0.96592 0.95795 1.22376 0.96185 0.99182 0.99950 1.23183 1.00691 0.95725 0.87947 1.67681 1.08645 1.11091 1.34918 1.23191 0.91009 0.94948 0.98385 1.22376 1.01852 1.00557 0.92859 0.94566 0.99244 0.95003 0.90113 0.91755 0.91045 0.88233 0.94669 0.94224 0.88833 0.89693 0.93632 0.93247 0.73980 0.86357 0.86493 0.89236 0.89308 0.82766 0.80755 0.80711 0.82696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.18 10.54 21.65 0.23 -57.95 16 2 C -0.07 -3.89 5.47 84.86 0.46 -3.42 16 3 Si 0.97 46.84 29.55 68.60 2.03 48.87 16 4 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 5 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.23 -12.85 9.75 84.03 0.82 -12.03 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.62 -31.30 3.14 -667.45 -2.09 -33.39 16 10 C 0.17 8.47 5.46 86.79 0.47 8.94 16 11 C -0.14 -4.77 7.09 31.99 0.23 -4.54 16 12 C -0.11 -3.22 5.61 31.78 0.18 -3.04 16 13 C 0.15 5.65 3.18 45.34 0.14 5.79 16 14 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 15 C -0.11 -3.88 4.69 30.59 0.14 -3.74 16 16 C -0.11 -2.28 5.07 30.59 0.16 -2.12 16 17 C 0.13 3.00 5.67 86.38 0.49 3.49 16 18 N -0.71 -11.94 5.56 -463.05 -2.57 -14.52 16 19 C 0.50 10.94 7.91 87.66 0.69 11.63 16 20 O -0.59 -20.56 16.50 16.02 0.26 -20.29 16 21 C 0.05 0.56 6.42 71.24 0.46 1.02 16 22 O -0.40 -7.15 9.86 -129.94 -1.28 -8.44 16 23 C 0.10 0.97 6.11 71.23 0.44 1.40 16 24 C -0.06 -0.88 5.55 -19.67 -0.11 -0.99 16 25 C -0.16 -2.20 9.82 22.36 0.22 -1.98 16 26 C 0.08 1.27 11.18 84.68 0.95 2.22 16 27 N -0.51 -9.91 10.36 -195.84 -2.03 -11.94 16 28 C 0.08 1.27 11.18 84.68 0.95 2.21 16 29 C -0.16 -2.17 9.82 22.36 0.22 -1.95 16 30 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 31 H -0.01 -0.57 8.10 -2.39 -0.02 -0.59 16 32 H 0.03 1.79 6.83 -2.38 -0.02 1.77 16 33 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.07 1.97 7.79 -2.39 -0.02 1.95 16 36 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.03 1.37 7.90 -2.38 -0.02 1.36 16 38 H 0.04 1.48 8.07 -2.39 -0.02 1.46 16 39 H 0.09 1.57 7.57 -2.39 -0.02 1.55 16 40 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.42 3.27 8.47 -92.71 -0.79 2.48 16 44 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.12 0.51 8.14 -2.38 -0.02 0.49 16 46 H 0.09 0.42 8.10 -2.39 -0.02 0.41 16 47 H 0.09 0.43 8.10 -2.39 -0.02 0.42 16 48 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 49 H 0.18 1.83 8.06 -2.91 -0.02 1.80 16 50 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16 51 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -86.44 419.39 1.57 -84.86 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 0.12 Total: 9.90 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 6.90 Total: 2.89 kcal Atomic # 7 Polarization: -111.33 SS G_CDS: -6.47 Total: -117.79 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -1.02 Total: -28.73 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -86.44 1.57 -84.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663115566.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.158 kcal (2) G-P(sol) polarization free energy of solvation -86.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds