Wall clock time and date at job start Wed Apr 1 2020 04:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00395 * 2 1 4 4 H 1.48506 * 109.47173 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47310 * 300.00136 * 3 2 1 6 6 H 1.48499 * 109.47056 * 60.00497 * 3 2 1 7 7 C 1.38813 * 119.99363 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00112 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00390 * 359.97438 * 7 2 1 10 10 C 1.47746 * 125.82344 * 346.81204 * 9 7 2 11 11 C 1.54909 * 104.84438 * 204.24617 * 10 9 7 12 12 C 1.55156 * 101.58498 * 322.91096 * 11 10 9 13 13 C 1.47031 * 125.65189 * 166.81482 * 9 7 2 14 14 H 1.09001 * 109.88006 * 59.32397 * 13 9 7 15 15 C 1.53002 * 109.87631 * 298.31415 * 13 9 7 16 16 C 1.53006 * 109.46485 * 176.67721 * 15 13 9 17 17 C 1.53006 * 109.46819 * 185.08237 * 16 15 13 18 18 N 1.46501 * 109.46939 * 179.97438 * 17 16 15 19 19 C 1.34776 * 119.99945 * 180.27733 * 18 17 16 20 20 O 1.21619 * 119.99670 * 359.72681 * 19 18 17 21 21 C 1.47412 * 120.00022 * 179.72548 * 19 18 17 22 22 C 1.36095 * 126.44847 * 180.02562 * 21 19 18 23 23 O 1.34251 * 106.95007 * 180.02562 * 22 21 19 24 24 C 1.34055 * 108.23001 * 0.02562 * 23 22 21 25 25 C 1.50698 * 125.38163 * 179.97438 * 24 23 22 26 26 C 1.53780 * 113.61500 * 39.16385 * 25 24 23 27 27 C 1.53944 * 87.02246 * 220.04916 * 26 25 24 28 28 C 1.53778 * 87.11436 * 25.36281 * 27 26 25 29 29 N 1.29941 * 109.23909 * 359.72649 * 24 23 22 30 30 H 0.96998 * 119.99635 * 359.97438 * 1 2 3 31 31 H 1.09001 * 110.43345 * 85.37185 * 10 9 7 32 32 H 1.08999 * 110.29066 * 323.05527 * 10 9 7 33 33 H 1.08995 * 111.00387 * 204.82995 * 11 10 9 34 34 H 1.09009 * 111.03330 * 80.99641 * 11 10 9 35 35 H 1.09008 * 110.71737 * 277.13904 * 12 11 10 36 36 H 1.08992 * 110.72349 * 153.86231 * 12 11 10 37 37 H 1.08998 * 109.47227 * 56.68001 * 15 13 9 38 38 H 1.08994 * 109.47427 * 296.67914 * 15 13 9 39 39 H 1.09004 * 109.47127 * 65.08670 * 16 15 13 40 40 H 1.08995 * 109.47093 * 305.08082 * 16 15 13 41 41 H 1.09004 * 109.46918 * 60.00304 * 17 16 15 42 42 H 1.09003 * 109.47131 * 300.00471 * 17 16 15 43 43 H 0.97003 * 120.00006 * 0.02562 * 18 17 16 44 44 H 1.08003 * 126.52535 * 0.02664 * 22 21 19 45 45 H 1.09000 * 112.84913 * 170.36090 * 25 24 23 46 46 H 1.09008 * 113.61101 * 334.57122 * 26 25 24 47 47 H 1.09000 * 113.61390 * 105.46672 * 26 25 24 48 48 H 1.09002 * 113.53926 * 270.81507 * 27 26 25 49 49 H 1.09001 * 113.74682 * 139.94178 * 27 26 25 50 50 H 1.09000 * 113.61703 * 220.09458 * 28 27 26 51 51 H 1.08997 * 113.61704 * 89.18467 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3963 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2024 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1170 -2.5538 0.2733 11 6 -0.2625 -4.0162 0.7628 12 6 0.7702 -4.7491 -0.1336 13 6 1.9042 -3.7118 -0.2736 14 1 2.6940 -3.9267 0.4462 15 6 2.4709 -3.7488 -1.6943 16 6 3.1436 -5.1009 -1.9398 17 6 3.8197 -5.0923 -3.3124 18 7 4.4644 -6.3868 -3.5473 19 6 5.1311 -6.6087 -4.6973 20 8 5.1934 -5.7361 -5.5422 21 6 5.7849 -7.9090 -4.9311 22 6 6.4890 -8.2727 -6.0376 23 8 6.9084 -9.5323 -5.8381 24 6 6.4715 -9.9344 -4.6362 25 6 6.7227 -11.2887 -4.0247 26 6 8.1379 -11.8302 -4.2871 27 6 7.4851 -13.2089 -4.4940 28 6 6.2001 -12.4565 -4.8781 29 7 5.8017 -8.9701 -4.0795 30 1 -0.4849 0.8401 0.0004 31 1 -0.6972 -2.3987 -0.6363 32 1 -0.4362 -1.8599 1.0509 33 1 -1.2706 -4.3898 0.5832 34 1 0.0026 -4.1044 1.8165 35 1 0.3389 -4.9826 -1.1071 36 1 1.1328 -5.6531 0.3556 37 1 3.2040 -2.9512 -1.8139 38 1 1.6623 -3.6096 -2.4118 39 1 2.3932 -5.8910 -1.9094 40 1 3.8915 -5.2802 -1.1675 41 1 4.5701 -4.3023 -3.3428 42 1 3.0718 -4.9129 -4.0847 43 1 4.4144 -7.0828 -2.8735 44 1 6.6749 -7.6639 -6.9100 45 1 6.4213 -11.3432 -2.9786 46 1 8.5999 -11.4262 -5.1880 47 1 8.7922 -11.7820 -3.4167 48 1 7.3933 -13.7893 -3.5759 49 1 7.9180 -13.7808 -5.3147 50 1 5.2923 -12.9131 -4.4840 51 1 6.1313 -12.2240 -5.9407 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663118855.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:43 Heat of formation + Delta-G solvation = 14.316512 kcal Electronic energy + Delta-G solvation = -29379.984568 eV Core-core repulsion = 25281.758599 eV Total energy + Delta-G solvation = -4098.225969 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.82968 -39.65322 -39.12730 -37.79309 -35.52433 -35.21390 -32.89902 -32.09956 -31.07357 -29.36985 -28.14957 -26.65878 -26.27926 -25.25252 -24.44208 -23.33440 -22.07700 -21.46976 -20.98154 -20.11049 -19.73655 -19.10515 -18.33916 -17.17962 -16.96148 -16.70823 -16.22054 -15.96519 -15.67758 -15.56603 -15.02784 -14.43366 -14.25567 -14.18878 -13.83120 -13.63580 -13.38466 -13.16782 -13.01354 -12.85716 -12.31190 -12.01621 -11.87755 -11.74645 -11.60339 -11.58461 -11.42116 -11.19845 -11.11535 -11.07505 -10.99378 -10.79886 -10.72541 -10.51802 -10.31022 -10.01502 -9.94735 -9.72808 -9.57287 -9.55800 -9.39607 -9.06729 -8.54097 -6.72945 -5.69149 -3.03672 0.77307 1.63716 2.15108 2.95932 3.11168 3.42087 3.44414 3.48403 3.50343 3.89891 3.99000 4.21459 4.26140 4.48248 4.52954 4.58909 4.99133 5.05220 5.06712 5.11012 5.19287 5.22204 5.28426 5.33856 5.34096 5.41418 5.43631 5.49022 5.64217 5.65821 5.67038 5.77348 5.79697 5.89889 6.00451 6.06536 6.16055 6.31476 6.39209 6.39934 6.47613 6.61655 6.74892 6.77427 7.00341 7.06834 7.22401 7.44495 7.60696 7.67546 7.85734 8.03243 8.34372 9.25491 9.87364 10.56868 11.43144 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017691 B = 0.001704 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.381411 B =16425.300505 C =17408.009739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.223 4.223 8 H 0.075 0.925 9 N -0.597 5.597 10 C 0.171 3.829 11 C -0.150 4.150 12 C -0.124 4.124 13 C 0.162 3.838 14 H 0.031 0.969 15 C -0.121 4.121 16 C -0.127 4.127 17 C 0.117 3.883 18 N -0.709 5.709 19 C 0.598 3.402 20 O -0.538 6.538 21 C -0.069 4.069 22 C 0.010 3.990 23 O -0.194 6.194 24 C 0.209 3.791 25 C -0.021 4.021 26 C -0.133 4.133 27 C -0.139 4.139 28 C -0.131 4.131 29 N -0.459 5.459 30 H 0.251 0.749 31 H 0.023 0.977 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.408 0.592 44 H 0.232 0.768 45 H 0.134 0.866 46 H 0.089 0.911 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.076 0.924 50 H 0.081 0.919 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.402 -27.877 -9.382 32.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.352 4.352 8 H 0.093 0.907 9 N -0.321 5.321 10 C 0.047 3.953 11 C -0.189 4.189 12 C -0.162 4.162 13 C 0.055 3.945 14 H 0.048 0.952 15 C -0.162 4.162 16 C -0.166 4.166 17 C -0.006 4.006 18 N -0.359 5.359 19 C 0.382 3.618 20 O -0.415 6.415 21 C -0.189 4.189 22 C -0.064 4.064 23 O -0.080 6.080 24 C 0.000 4.000 25 C -0.040 4.040 26 C -0.171 4.171 27 C -0.177 4.177 28 C -0.169 4.169 29 N -0.188 5.188 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.244 0.756 44 H 0.248 0.752 45 H 0.152 0.848 46 H 0.108 0.892 47 H 0.099 0.901 48 H 0.106 0.894 49 H 0.095 0.905 50 H 0.099 0.901 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 13.096 -27.001 -9.359 31.435 hybrid contribution 0.656 0.845 -0.479 1.172 sum 13.752 -26.156 -9.838 31.146 Atomic orbital electron populations 1.69948 1.04950 1.24895 1.56822 1.24874 0.95668 0.97712 1.02143 0.86099 0.78866 0.83961 0.77195 1.20471 1.21766 1.21837 1.19022 0.90353 0.82351 1.43437 0.90713 1.44630 1.05360 1.01014 1.81103 1.21483 0.85021 0.90212 0.98625 1.23009 0.97402 0.99767 0.98711 1.22590 0.97109 0.97123 0.99408 1.20921 0.93830 0.86936 0.92859 0.95159 1.22028 1.00051 0.94252 0.99843 1.21841 0.99764 1.00232 0.94730 1.21597 0.96917 0.83739 0.98305 1.45912 1.53359 1.17685 1.18928 1.16754 0.78321 0.84223 0.82469 1.90845 1.61469 1.44393 1.44810 1.21867 1.06832 0.96324 0.93903 1.25313 0.97103 0.82761 1.01178 1.84341 1.60370 1.27582 1.35728 1.26082 0.95047 0.97719 0.81191 1.21348 0.99322 0.82911 1.00417 1.23062 0.94666 0.96196 1.03187 1.22850 0.96136 0.96191 1.02490 1.23027 0.98840 0.94712 1.00318 1.70773 1.18508 0.99364 1.30204 0.93839 0.95943 0.91016 0.92584 0.92502 0.92048 0.92620 0.91670 0.92168 0.91598 0.91653 0.91095 0.91156 0.75641 0.75222 0.84813 0.89220 0.90142 0.89372 0.90536 0.90075 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.22 10.54 55.49 0.59 -26.63 16 2 C -0.01 -0.21 5.47 -17.43 -0.10 -0.31 16 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.22 -6.20 9.75 -15.06 -0.15 -6.34 16 8 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 9 N -0.60 -15.13 3.14 -162.31 -0.51 -15.64 16 10 C 0.17 4.20 5.46 -2.35 -0.01 4.19 16 11 C -0.15 -2.87 7.08 -24.58 -0.17 -3.04 16 12 C -0.12 -2.16 5.61 -24.90 -0.14 -2.30 16 13 C 0.16 3.28 3.18 -66.95 -0.21 3.07 16 14 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 15 C -0.12 -2.19 4.69 -26.73 -0.13 -2.32 16 16 C -0.13 -1.74 5.07 -26.72 -0.14 -1.88 16 17 C 0.12 1.62 5.67 -4.04 -0.02 1.60 16 18 N -0.71 -9.05 5.55 -61.38 -0.34 -9.39 16 19 C 0.60 8.34 7.81 -12.53 -0.10 8.24 16 20 O -0.54 -8.99 16.89 5.26 0.09 -8.90 16 21 C -0.07 -0.82 6.99 -83.02 -0.58 -1.40 16 22 C 0.01 0.10 11.95 29.96 0.36 0.45 16 23 O -0.19 -1.71 10.43 6.51 0.07 -1.64 16 24 C 0.21 1.85 7.32 -13.08 -0.10 1.76 16 25 C -0.02 -0.12 4.28 -90.96 -0.39 -0.51 16 26 C -0.13 -0.55 7.64 -25.83 -0.20 -0.75 16 27 C -0.14 -0.43 8.09 -25.83 -0.21 -0.64 16 28 C -0.13 -0.56 7.63 -25.92 -0.20 -0.75 16 29 N -0.46 -5.09 11.06 -7.65 -0.08 -5.17 16 30 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.02 0.60 8.10 -51.93 -0.42 0.17 16 32 H 0.07 1.96 6.83 -51.93 -0.35 1.60 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 35 H 0.06 1.02 7.79 -51.92 -0.40 0.62 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.06 1.29 7.89 -51.93 -0.41 0.88 16 38 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 39 H 0.07 0.83 7.57 -51.93 -0.39 0.44 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.41 4.58 8.20 -40.82 -0.33 4.24 16 44 H 0.23 1.50 8.06 -52.48 -0.42 1.08 16 45 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 0.41 7.85 -51.92 -0.41 0.01 16 47 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 49 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 50 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 51 H 0.09 0.42 8.09 -51.93 -0.42 0.00 16 LS Contribution 414.50 15.07 6.25 6.25 Total: -1.00 -33.38 414.50 -10.05 -43.44 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -8.61 Total: 1.28 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -2.48 Total: -0.93 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.35 Total: -56.84 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.16 Total: -10.54 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.38 -10.05 -43.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663118855.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.752 kcal (2) G-P(sol) polarization free energy of solvation -33.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds