Wall clock time and date at job start Wed Apr 1 2020 04:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00395 * 2 1 4 4 H 1.48506 * 109.47173 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47310 * 300.00136 * 3 2 1 6 6 H 1.48499 * 109.47056 * 60.00497 * 3 2 1 7 7 C 1.38813 * 119.99363 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00112 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00390 * 359.97438 * 7 2 1 10 10 C 1.47746 * 125.82344 * 346.81204 * 9 7 2 11 11 C 1.54909 * 104.84438 * 204.24617 * 10 9 7 12 12 C 1.55156 * 101.58498 * 322.91096 * 11 10 9 13 13 C 1.47031 * 125.65189 * 166.81482 * 9 7 2 14 14 H 1.09001 * 109.88006 * 59.32397 * 13 9 7 15 15 C 1.53002 * 109.87631 * 298.31415 * 13 9 7 16 16 C 1.53006 * 109.46485 * 176.67721 * 15 13 9 17 17 C 1.53006 * 109.46819 * 185.08237 * 16 15 13 18 18 N 1.46501 * 109.46939 * 179.97438 * 17 16 15 19 19 C 1.34776 * 119.99945 * 180.27733 * 18 17 16 20 20 O 1.21619 * 119.99670 * 359.72681 * 19 18 17 21 21 C 1.47412 * 120.00022 * 179.72548 * 19 18 17 22 22 C 1.36095 * 126.44847 * 180.02562 * 21 19 18 23 23 O 1.34251 * 106.95007 * 180.02562 * 22 21 19 24 24 C 1.34055 * 108.23001 * 0.02562 * 23 22 21 25 25 C 1.50698 * 125.38163 * 179.97438 * 24 23 22 26 26 C 1.53780 * 113.61500 * 39.16385 * 25 24 23 27 27 C 1.53944 * 87.02246 * 220.04916 * 26 25 24 28 28 C 1.53778 * 87.11436 * 25.36281 * 27 26 25 29 29 N 1.29941 * 109.23909 * 359.72649 * 24 23 22 30 30 H 0.96998 * 119.99635 * 359.97438 * 1 2 3 31 31 H 1.09001 * 110.43345 * 85.37185 * 10 9 7 32 32 H 1.08999 * 110.29066 * 323.05527 * 10 9 7 33 33 H 1.08995 * 111.00387 * 204.82995 * 11 10 9 34 34 H 1.09009 * 111.03330 * 80.99641 * 11 10 9 35 35 H 1.09008 * 110.71737 * 277.13904 * 12 11 10 36 36 H 1.08992 * 110.72349 * 153.86231 * 12 11 10 37 37 H 1.08998 * 109.47227 * 56.68001 * 15 13 9 38 38 H 1.08994 * 109.47427 * 296.67914 * 15 13 9 39 39 H 1.09004 * 109.47127 * 65.08670 * 16 15 13 40 40 H 1.08995 * 109.47093 * 305.08082 * 16 15 13 41 41 H 1.09004 * 109.46918 * 60.00304 * 17 16 15 42 42 H 1.09003 * 109.47131 * 300.00471 * 17 16 15 43 43 H 0.97003 * 120.00006 * 0.02562 * 18 17 16 44 44 H 1.08003 * 126.52535 * 0.02664 * 22 21 19 45 45 H 1.09000 * 112.84913 * 170.36090 * 25 24 23 46 46 H 1.09008 * 113.61101 * 334.57122 * 26 25 24 47 47 H 1.09000 * 113.61390 * 105.46672 * 26 25 24 48 48 H 1.09002 * 113.53926 * 270.81507 * 27 26 25 49 49 H 1.09001 * 113.74682 * 139.94178 * 27 26 25 50 50 H 1.09000 * 113.61703 * 220.09458 * 28 27 26 51 51 H 1.08997 * 113.61704 * 89.18467 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3963 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2024 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1170 -2.5538 0.2733 11 6 -0.2625 -4.0162 0.7628 12 6 0.7702 -4.7491 -0.1336 13 6 1.9042 -3.7118 -0.2736 14 1 2.6940 -3.9267 0.4462 15 6 2.4709 -3.7488 -1.6943 16 6 3.1436 -5.1009 -1.9398 17 6 3.8197 -5.0923 -3.3124 18 7 4.4644 -6.3868 -3.5473 19 6 5.1311 -6.6087 -4.6973 20 8 5.1934 -5.7361 -5.5422 21 6 5.7849 -7.9090 -4.9311 22 6 6.4890 -8.2727 -6.0376 23 8 6.9084 -9.5323 -5.8381 24 6 6.4715 -9.9344 -4.6362 25 6 6.7227 -11.2887 -4.0247 26 6 8.1379 -11.8302 -4.2871 27 6 7.4851 -13.2089 -4.4940 28 6 6.2001 -12.4565 -4.8781 29 7 5.8017 -8.9701 -4.0795 30 1 -0.4849 0.8401 0.0004 31 1 -0.6972 -2.3987 -0.6363 32 1 -0.4362 -1.8599 1.0509 33 1 -1.2706 -4.3898 0.5832 34 1 0.0026 -4.1044 1.8165 35 1 0.3389 -4.9826 -1.1071 36 1 1.1328 -5.6531 0.3556 37 1 3.2040 -2.9512 -1.8139 38 1 1.6623 -3.6096 -2.4118 39 1 2.3932 -5.8910 -1.9094 40 1 3.8915 -5.2802 -1.1675 41 1 4.5701 -4.3023 -3.3428 42 1 3.0718 -4.9129 -4.0847 43 1 4.4144 -7.0828 -2.8735 44 1 6.6749 -7.6639 -6.9100 45 1 6.4213 -11.3432 -2.9786 46 1 8.5999 -11.4262 -5.1880 47 1 8.7922 -11.7820 -3.4167 48 1 7.3933 -13.7893 -3.5759 49 1 7.9180 -13.7808 -5.3147 50 1 5.2923 -12.9131 -4.4840 51 1 6.1313 -12.2240 -5.9407 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663118855.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:42 Heat of formation + Delta-G solvation = -8.087495 kcal Electronic energy + Delta-G solvation = -29380.956079 eV Core-core repulsion = 25281.758599 eV Total energy + Delta-G solvation = -4099.197480 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.55738 -40.71744 -39.51987 -39.43366 -36.77307 -35.99964 -34.68170 -33.63580 -31.81740 -31.23972 -29.59827 -27.18598 -26.72852 -26.58024 -26.12934 -24.50731 -22.86267 -22.56827 -21.85897 -21.84179 -20.78833 -20.27305 -19.11587 -18.68991 -17.91769 -17.71278 -17.11778 -17.00123 -16.69182 -16.62406 -16.15444 -16.01759 -15.70208 -15.48559 -15.13127 -14.62665 -14.35365 -13.92784 -13.75356 -13.70407 -13.58271 -13.53269 -13.33351 -13.16112 -13.00790 -12.77720 -12.67580 -12.42384 -12.28697 -11.97913 -11.96429 -11.93513 -11.86148 -11.69760 -11.55664 -11.43303 -11.41140 -11.34417 -11.28751 -11.13534 -10.66515 -10.32142 -9.99119 -8.78303 -7.84618 -5.19923 -0.00940 0.85115 1.43853 1.44959 1.48119 1.54819 1.98362 2.13010 2.49823 2.74714 3.33536 3.54751 3.58730 3.64937 3.69051 3.78182 3.92533 3.92704 3.99124 4.04857 4.15472 4.24797 4.34738 4.41198 4.42181 4.53960 4.61463 4.73252 4.74092 4.79721 4.80908 4.83337 4.87608 4.95160 4.98412 5.03066 5.06121 5.12121 5.12166 5.15103 5.23132 5.27909 5.34372 5.50897 5.51437 5.51456 5.68707 5.70038 5.80336 6.22506 6.28079 6.52746 6.99994 7.13011 7.82566 8.50222 9.26927 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017691 B = 0.001704 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.381411 B =16425.300505 C =17408.009739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.068 4.068 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.295 1.295 6 H -0.292 1.292 7 C -0.228 4.228 8 H 0.076 0.924 9 N -0.619 5.619 10 C 0.173 3.827 11 C -0.137 4.137 12 C -0.112 4.112 13 C 0.151 3.849 14 H 0.034 0.966 15 C -0.111 4.111 16 C -0.108 4.108 17 C 0.124 3.876 18 N -0.700 5.700 19 C 0.596 3.404 20 O -0.573 6.573 21 C -0.099 4.099 22 C 0.026 3.974 23 O -0.191 6.191 24 C 0.214 3.786 25 C -0.028 4.028 26 C -0.131 4.131 27 C -0.130 4.130 28 C -0.130 4.130 29 N -0.480 5.480 30 H 0.245 0.755 31 H -0.009 1.009 32 H 0.033 0.967 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.039 0.961 38 H 0.043 0.957 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.418 0.582 44 H 0.255 0.745 45 H 0.143 0.857 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.100 0.900 49 H 0.082 0.918 50 H 0.087 0.913 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.845 -31.150 -9.267 35.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.800 3.200 4 H -0.191 1.191 5 H -0.222 1.222 6 H -0.219 1.219 7 C -0.357 4.357 8 H 0.094 0.906 9 N -0.344 5.344 10 C 0.048 3.952 11 C -0.175 4.175 12 C -0.149 4.149 13 C 0.045 3.955 14 H 0.052 0.948 15 C -0.151 4.151 16 C -0.146 4.146 17 C 0.001 3.999 18 N -0.350 5.350 19 C 0.383 3.617 20 O -0.454 6.454 21 C -0.218 4.218 22 C -0.048 4.048 23 O -0.077 6.077 24 C 0.005 3.995 25 C -0.047 4.047 26 C -0.170 4.170 27 C -0.167 4.167 28 C -0.168 4.168 29 N -0.210 5.210 30 H 0.055 0.945 31 H 0.009 0.991 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.114 0.886 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.255 0.745 44 H 0.271 0.729 45 H 0.161 0.839 46 H 0.102 0.898 47 H 0.106 0.894 48 H 0.119 0.881 49 H 0.101 0.899 50 H 0.106 0.894 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.559 -30.328 -9.220 34.882 hybrid contribution 0.250 1.788 -0.522 1.879 sum 14.809 -28.541 -9.742 33.597 Atomic orbital electron populations 1.70157 1.06278 1.25016 1.58482 1.25654 0.96522 1.00910 1.02961 0.85112 0.78306 0.79978 0.76619 1.19104 1.22213 1.21881 1.19343 0.90704 0.83730 1.41972 0.90581 1.44937 1.05803 1.02248 1.81378 1.21291 0.84506 0.93261 0.96153 1.22881 0.99630 0.95751 0.99283 1.22587 0.95129 0.97257 0.99970 1.21208 0.95070 0.85431 0.93760 0.94776 1.21814 0.99050 0.96136 0.98131 1.21633 1.00251 0.97944 0.94816 1.21390 0.96347 0.84030 0.98178 1.45775 1.52869 1.17369 1.19006 1.17033 0.77933 0.84689 0.82086 1.90818 1.62894 1.45764 1.45900 1.21666 1.08725 0.96009 0.95426 1.25772 0.95263 0.82782 1.00974 1.84384 1.60182 1.27269 1.35833 1.26813 0.93656 0.98250 0.80817 1.21692 1.00667 0.81448 1.00912 1.23074 0.93946 0.96674 1.03265 1.22838 0.94901 0.95670 1.03270 1.23040 0.99811 0.94220 0.99733 1.70732 1.19823 0.99695 1.30700 0.94544 0.99085 0.94880 0.90068 0.91797 0.91043 0.88646 0.94219 0.93788 0.89373 0.90258 0.92525 0.92115 0.74519 0.72931 0.83934 0.89800 0.89380 0.88124 0.89907 0.89413 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.55 10.54 21.65 0.23 -58.32 16 2 C -0.07 -3.94 5.47 84.86 0.46 -3.48 16 3 Si 0.97 47.15 29.55 68.60 2.03 49.18 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 7 C -0.23 -12.94 9.75 84.03 0.82 -12.12 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.62 -31.85 3.14 -667.42 -2.09 -33.94 16 10 C 0.17 8.68 5.46 86.79 0.47 9.15 16 11 C -0.14 -4.97 7.08 31.99 0.23 -4.75 16 12 C -0.11 -3.52 5.61 31.78 0.18 -3.34 16 13 C 0.15 5.94 3.18 45.34 0.14 6.08 16 14 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 15 C -0.11 -3.95 4.69 30.60 0.14 -3.81 16 16 C -0.11 -2.74 5.07 30.60 0.16 -2.58 16 17 C 0.12 3.35 5.67 86.38 0.49 3.84 16 18 N -0.70 -17.17 5.55 -466.35 -2.59 -19.76 16 19 C 0.60 16.42 7.81 86.66 0.68 17.10 16 20 O -0.57 -19.32 16.89 -4.09 -0.07 -19.39 16 21 C -0.10 -2.27 6.99 40.41 0.28 -1.98 16 22 C 0.03 0.46 11.95 67.32 0.80 1.26 16 23 O -0.19 -3.06 10.43 0.39 0.00 -3.05 16 24 C 0.21 3.47 7.32 88.39 0.65 4.12 16 25 C -0.03 -0.25 4.28 -11.01 -0.05 -0.30 16 26 C -0.13 -0.80 7.64 31.18 0.24 -0.57 16 27 C -0.13 -0.46 8.09 31.18 0.25 -0.21 16 28 C -0.13 -0.82 7.63 31.12 0.24 -0.59 16 29 N -0.48 -10.04 11.06 -293.03 -3.24 -13.28 16 30 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 31 H -0.01 -0.49 8.10 -2.39 -0.02 -0.51 16 32 H 0.03 1.88 6.83 -2.39 -0.02 1.86 16 33 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.07 2.13 7.79 -2.38 -0.02 2.12 16 36 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.04 1.59 7.89 -2.39 -0.02 1.57 16 38 H 0.04 1.69 8.07 -2.39 -0.02 1.67 16 39 H 0.09 1.90 7.57 -2.38 -0.02 1.89 16 40 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.42 8.63 8.20 -92.71 -0.76 7.87 16 44 H 0.25 2.92 8.06 -2.91 -0.02 2.89 16 45 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.08 0.62 7.85 -2.38 -0.02 0.61 16 47 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 49 H 0.08 0.22 8.14 -2.39 -0.02 0.21 16 50 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 51 H 0.08 0.63 8.09 -2.39 -0.02 0.61 16 Total: -1.00 -75.51 414.50 0.62 -74.89 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.16 Total: 15.85 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 6.19 Total: 7.83 kcal Atomic # 7 Polarization: -117.62 SS G_CDS: -7.69 Total: -125.31 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.07 Total: -22.44 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -75.51 0.62 -74.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663118855.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.803 kcal (2) G-P(sol) polarization free energy of solvation -75.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds