Wall clock time and date at job start Wed Apr 1 2020 05:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 C 1.53000 * 109.46770 * 270.21487 * 7 6 5 9 9 C 1.50707 * 109.47153 * 179.97438 * 8 7 6 10 10 O 1.21275 * 119.99549 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99954 * 180.02562 * 9 8 7 12 12 C 1.46503 * 119.99773 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46972 * 179.97438 * 12 11 9 14 14 N 1.46901 * 109.46748 * 179.97438 * 13 12 11 15 15 C 1.46899 * 110.99865 * 66.04876 * 14 13 12 16 16 C 1.46900 * 110.99613 * 189.99442 * 14 13 12 17 17 C 1.50703 * 109.46855 * 169.99992 * 16 14 13 18 18 O 1.21289 * 120.00305 * 0.02562 * 17 16 14 19 19 N 1.34778 * 119.99818 * 180.02562 * 17 16 14 20 20 C 1.37099 * 119.99882 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00016 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99895 * 179.97438 * 20 19 17 23 23 N 1.31407 * 119.99992 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99832 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46813 * 60.00002 * 24 22 20 26 26 H 1.48499 * 109.47224 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47187 * 300.00000 * 24 22 20 28 28 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 30 30 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 31 31 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 32 32 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 33 33 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 34 34 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 35 35 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 36 36 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 37 37 H 1.08997 * 109.47347 * 299.99738 * 8 7 6 38 38 H 1.09001 * 109.47565 * 60.00121 * 8 7 6 39 39 H 0.96997 * 119.99844 * 359.97438 * 11 9 8 40 40 H 1.08997 * 109.46945 * 299.99927 * 12 11 9 41 41 H 1.09000 * 109.47310 * 59.99464 * 12 11 9 42 42 H 1.09005 * 109.46608 * 299.99458 * 13 12 11 43 43 H 1.08995 * 109.46984 * 59.99845 * 13 12 11 44 44 H 1.09000 * 109.47637 * 59.99398 * 15 14 13 45 45 H 1.09003 * 109.47021 * 179.97438 * 15 14 13 46 46 H 1.09004 * 109.46961 * 299.99433 * 15 14 13 47 47 H 1.08992 * 109.47445 * 290.00274 * 16 14 13 48 48 H 1.09003 * 109.46703 * 50.00471 * 16 14 13 49 49 H 0.97002 * 120.00068 * 359.97438 * 19 17 16 50 50 H 0.97004 * 119.99743 * 180.02562 * 23 22 20 51 51 H 1.08001 * 119.99700 * 359.96970 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 6 4.5891 -2.9437 -1.4431 9 6 5.3431 -4.2486 -1.4432 10 8 5.6470 -4.7733 -0.3929 11 7 5.6806 -4.8318 -2.6104 12 6 6.4131 -6.1005 -2.6105 13 6 6.6682 -6.5420 -4.0530 14 7 7.4033 -7.8139 -4.0530 15 6 6.5815 -8.8968 -3.4962 16 6 7.8727 -8.1506 -5.4036 17 6 8.8219 -9.3187 -5.3289 18 8 9.0814 -9.8216 -4.2561 19 7 9.3825 -9.8046 -6.4541 20 6 10.2456 -10.8676 -6.3862 21 1 10.4766 -11.3154 -5.4309 22 6 10.8231 -11.3689 -7.5463 23 7 10.5416 -10.8243 -8.7086 24 14 11.9997 -12.8168 -7.4536 25 1 11.2988 -13.9873 -6.8670 26 1 12.4738 -13.1576 -8.8190 27 1 13.1612 -12.4571 -6.6012 28 6 2.1981 -1.1970 -0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5140 32 1 1.6583 2.1326 0.0004 33 1 4.1204 2.1326 0.0010 34 1 5.3517 -0.0001 -0.0091 35 1 5.2866 -2.3718 0.5133 36 1 3.7450 -3.2618 0.5132 37 1 3.6367 -3.0740 -1.9569 38 1 5.1782 -2.1841 -1.9569 39 1 5.4379 -4.4118 -3.4504 40 1 7.3652 -5.9703 -2.0961 41 1 5.8238 -6.8603 -2.0971 42 1 5.7158 -6.6723 -4.5669 43 1 7.2573 -5.7823 -4.5666 44 1 5.6796 -9.0143 -4.0970 45 1 7.1495 -9.8270 -3.5085 46 1 6.3054 -8.6527 -2.4704 47 1 7.0202 -8.4146 -6.0293 48 1 8.3871 -7.2914 -5.8341 49 1 9.1747 -9.4026 -7.3121 50 1 10.9445 -11.1745 -9.5186 51 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663239833.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:03 Heat of formation + Delta-G solvation = -56.944123 kcal Electronic energy + Delta-G solvation = -28284.449442 eV Core-core repulsion = 24183.133380 eV Total energy + Delta-G solvation = -4101.316062 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.20423 -39.57468 -38.65010 -36.83539 -34.85740 -34.55944 -33.80701 -32.72301 -31.26060 -30.64651 -29.21886 -27.70475 -27.31786 -25.68506 -24.81119 -23.55286 -22.38991 -21.24826 -20.90740 -20.28536 -19.17259 -17.85549 -17.39875 -16.77174 -16.34460 -16.31378 -15.98003 -15.73851 -15.21579 -15.12882 -14.71905 -14.62799 -14.31169 -14.18230 -13.89392 -13.63526 -13.57184 -13.39843 -13.31947 -13.12153 -12.88717 -12.81090 -12.61017 -12.13486 -12.00705 -11.84638 -11.65228 -11.52142 -11.40164 -11.31999 -11.27733 -11.19758 -11.05107 -10.92692 -10.43899 -10.21627 -10.08081 -9.47129 -9.20754 -9.16760 -8.96135 -8.48576 -7.99317 -7.89600 -6.41947 -3.82695 0.95284 1.00430 2.46263 2.88920 3.20320 3.26011 3.30584 3.36950 3.89721 4.03554 4.23478 4.33062 4.39003 4.49683 4.59713 4.73506 4.75271 4.78952 4.89045 4.92667 4.99766 5.10452 5.12255 5.16345 5.21923 5.24606 5.25060 5.36720 5.38497 5.49981 5.62615 5.64186 5.68251 5.76309 5.83263 5.83849 5.89430 5.92288 6.00377 6.09532 6.19509 6.23704 6.27364 6.27764 6.55120 6.64035 7.18115 7.28365 7.32705 7.55059 8.03778 8.05959 8.61619 9.17991 9.53939 10.05950 10.75724 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.033838 B = 0.001237 C = 0.001233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.269885 B =22620.986045 C =22703.312140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C -0.127 4.127 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.076 4.076 7 C -0.066 4.066 8 C -0.133 4.133 9 C 0.511 3.489 10 O -0.538 6.538 11 N -0.731 5.731 12 C 0.121 3.879 13 C 0.045 3.955 14 N -0.515 5.515 15 C 0.018 3.982 16 C 0.047 3.953 17 C 0.443 3.557 18 O -0.576 6.576 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.273 1.273 28 C -0.118 4.118 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.399 0.601 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.036 0.964 43 H 0.079 0.921 44 H 0.015 0.985 45 H 0.098 0.902 46 H 0.063 0.937 47 H 0.048 0.952 48 H 0.088 0.912 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.639 24.641 11.068 33.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.145 4.145 4 C -0.132 4.132 5 C -0.140 4.140 6 C -0.077 4.077 7 C -0.104 4.104 8 C -0.173 4.173 9 C 0.297 3.703 10 O -0.415 6.415 11 N -0.383 5.383 12 C -0.003 4.003 13 C -0.084 4.084 14 N -0.239 5.239 15 C -0.130 4.130 16 C -0.084 4.084 17 C 0.228 3.772 18 O -0.460 6.460 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.178 4.178 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.136 4.136 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.233 0.767 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.097 0.903 44 H 0.034 0.966 45 H 0.116 0.884 46 H 0.081 0.919 47 H 0.066 0.934 48 H 0.107 0.893 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.744 23.890 12.657 32.898 hybrid contribution -0.321 -0.264 -1.696 1.746 sum -19.065 23.626 10.961 32.277 Atomic orbital electron populations 1.20806 0.91216 1.02821 1.02392 1.19930 0.96075 0.93165 0.99356 1.21038 0.94338 0.97488 1.01639 1.21142 0.94295 0.98032 0.99745 1.21087 0.99975 0.91976 1.00994 1.19897 0.93667 0.94976 0.99115 1.20341 1.01029 0.93618 0.95388 1.21648 1.01445 0.95013 0.99241 1.20664 0.79497 0.86537 0.83602 1.90733 1.54404 1.65125 1.31218 1.45985 1.58787 1.24830 1.08687 1.21343 0.97271 0.84484 0.97196 1.22255 0.97097 0.93455 0.95632 1.61449 1.38795 1.01948 1.21740 1.22628 0.95003 0.96771 0.98557 1.21867 0.98211 0.99112 0.89215 1.19707 0.85658 0.86644 0.85154 1.90493 1.64945 1.62185 1.28415 1.41850 1.40580 1.30078 1.07519 1.19659 1.20277 1.07721 0.95264 0.87940 1.25247 0.98661 0.99292 0.94644 1.69603 1.44585 1.42075 0.98125 0.85922 0.80256 0.80952 0.77121 1.19922 1.20992 1.19867 1.20974 0.93581 0.97652 1.01368 0.91119 0.91477 0.91575 0.86262 0.86071 0.85994 0.89997 0.90088 0.88794 0.88697 0.76703 0.90260 0.91201 0.94598 0.90302 0.96646 0.88362 0.91854 0.93362 0.89330 0.77510 0.91840 0.86048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.54 10.01 36.01 0.36 -0.18 16 2 C -0.09 -0.58 5.88 -104.62 -0.62 -1.19 16 3 C -0.13 -0.83 9.70 -39.58 -0.38 -1.22 16 4 C -0.11 -0.75 10.05 -39.58 -0.40 -1.15 16 5 C -0.12 -0.87 9.70 -39.58 -0.38 -1.26 16 6 C -0.08 -0.57 5.13 -104.63 -0.54 -1.11 16 7 C -0.07 -0.51 4.63 -27.88 -0.13 -0.64 16 8 C -0.13 -0.91 5.68 -27.88 -0.16 -1.06 16 9 C 0.51 5.30 7.83 -10.98 -0.09 5.21 16 10 O -0.54 -7.97 15.98 5.56 0.09 -7.88 16 11 N -0.73 -6.64 5.56 -60.29 -0.33 -6.97 16 12 C 0.12 1.43 5.60 -4.04 -0.02 1.41 16 13 C 0.04 0.52 5.07 -3.82 -0.02 0.50 16 14 N -0.52 -8.39 4.50 -244.37 -1.10 -9.49 16 15 C 0.02 0.29 8.96 60.06 0.54 0.83 16 16 C 0.05 0.82 5.45 -4.97 -0.03 0.79 16 17 C 0.44 10.35 7.47 -10.98 -0.08 10.27 16 18 O -0.58 -15.46 13.91 5.55 0.08 -15.38 16 19 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 20 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -24.37 13.05 55.50 0.72 -23.64 16 24 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 C -0.12 -0.85 9.36 -39.58 -0.37 -1.22 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 31 H 0.07 0.26 8.09 -51.92 -0.42 -0.16 16 32 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.12 0.58 8.06 -52.49 -0.42 0.15 16 34 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 35 H 0.08 0.71 8.04 -51.93 -0.42 0.29 16 36 H 0.08 0.69 8.04 -51.93 -0.42 0.27 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.40 2.38 8.47 -40.82 -0.35 2.04 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.07 0.91 6.55 -51.93 -0.34 0.57 16 42 H 0.04 0.38 8.12 -51.93 -0.42 -0.05 16 43 H 0.08 0.83 7.93 -51.93 -0.41 0.42 16 44 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.10 1.94 5.82 -51.93 -0.30 1.64 16 46 H 0.06 0.93 6.47 -51.93 -0.34 0.59 16 47 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 48 H 0.09 1.37 7.93 -51.93 -0.41 0.96 16 49 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 50 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 51 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 422.86 15.07 6.37 6.37 Total: -1.00 -33.93 422.86 -10.11 -44.04 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -8.30 Total: 9.12 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -2.56 Total: 2.05 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.77 Total: -54.29 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: 0.17 Total: -23.26 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -33.93 -10.11 -44.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663239833.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.901 kcal (2) G-P(sol) polarization free energy of solvation -33.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds