Wall clock time and date at job start Wed Apr 1 2020 05:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 C 1.53000 * 109.46770 * 270.21487 * 7 6 5 9 9 C 1.50707 * 109.47153 * 179.97438 * 8 7 6 10 10 O 1.21275 * 119.99549 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99954 * 180.02562 * 9 8 7 12 12 C 1.46503 * 119.99773 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46972 * 179.97438 * 12 11 9 14 14 N 1.46901 * 109.46748 * 179.97438 * 13 12 11 15 15 C 1.46899 * 110.99865 * 66.04876 * 14 13 12 16 16 C 1.46900 * 110.99613 * 189.99442 * 14 13 12 17 17 C 1.50703 * 109.46855 * 169.99992 * 16 14 13 18 18 O 1.21289 * 120.00305 * 0.02562 * 17 16 14 19 19 N 1.34778 * 119.99818 * 180.02562 * 17 16 14 20 20 C 1.37099 * 119.99882 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00016 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99895 * 179.97438 * 20 19 17 23 23 N 1.31407 * 119.99992 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99832 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46813 * 60.00002 * 24 22 20 26 26 H 1.48499 * 109.47224 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47187 * 300.00000 * 24 22 20 28 28 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 30 30 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 31 31 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 32 32 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 33 33 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 34 34 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 35 35 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 36 36 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 37 37 H 1.08997 * 109.47347 * 299.99738 * 8 7 6 38 38 H 1.09001 * 109.47565 * 60.00121 * 8 7 6 39 39 H 0.96997 * 119.99844 * 359.97438 * 11 9 8 40 40 H 1.08997 * 109.46945 * 299.99927 * 12 11 9 41 41 H 1.09000 * 109.47310 * 59.99464 * 12 11 9 42 42 H 1.09005 * 109.46608 * 299.99458 * 13 12 11 43 43 H 1.08995 * 109.46984 * 59.99845 * 13 12 11 44 44 H 1.09000 * 109.47637 * 59.99398 * 15 14 13 45 45 H 1.09003 * 109.47021 * 179.97438 * 15 14 13 46 46 H 1.09004 * 109.46961 * 299.99433 * 15 14 13 47 47 H 1.08992 * 109.47445 * 290.00274 * 16 14 13 48 48 H 1.09003 * 109.46703 * 50.00471 * 16 14 13 49 49 H 0.97002 * 120.00068 * 359.97438 * 19 17 16 50 50 H 0.97004 * 119.99743 * 180.02562 * 23 22 20 51 51 H 1.08001 * 119.99700 * 359.96970 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 6 4.5891 -2.9437 -1.4431 9 6 5.3431 -4.2486 -1.4432 10 8 5.6470 -4.7733 -0.3929 11 7 5.6806 -4.8318 -2.6104 12 6 6.4131 -6.1005 -2.6105 13 6 6.6682 -6.5420 -4.0530 14 7 7.4033 -7.8139 -4.0530 15 6 6.5815 -8.8968 -3.4962 16 6 7.8727 -8.1506 -5.4036 17 6 8.8219 -9.3187 -5.3289 18 8 9.0814 -9.8216 -4.2561 19 7 9.3825 -9.8046 -6.4541 20 6 10.2456 -10.8676 -6.3862 21 1 10.4766 -11.3154 -5.4309 22 6 10.8231 -11.3689 -7.5463 23 7 10.5416 -10.8243 -8.7086 24 14 11.9997 -12.8168 -7.4536 25 1 11.2988 -13.9873 -6.8670 26 1 12.4738 -13.1576 -8.8190 27 1 13.1612 -12.4571 -6.6012 28 6 2.1981 -1.1970 -0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5140 32 1 1.6583 2.1326 0.0004 33 1 4.1204 2.1326 0.0010 34 1 5.3517 -0.0001 -0.0091 35 1 5.2866 -2.3718 0.5133 36 1 3.7450 -3.2618 0.5132 37 1 3.6367 -3.0740 -1.9569 38 1 5.1782 -2.1841 -1.9569 39 1 5.4379 -4.4118 -3.4504 40 1 7.3652 -5.9703 -2.0961 41 1 5.8238 -6.8603 -2.0971 42 1 5.7158 -6.6723 -4.5669 43 1 7.2573 -5.7823 -4.5666 44 1 5.6796 -9.0143 -4.0970 45 1 7.1495 -9.8270 -3.5085 46 1 6.3054 -8.6527 -2.4704 47 1 7.0202 -8.4146 -6.0293 48 1 8.3871 -7.2914 -5.8341 49 1 9.1747 -9.4026 -7.3121 50 1 10.9445 -11.1745 -9.5186 51 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663239833.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:02 Heat of formation + Delta-G solvation = -80.270385 kcal Electronic energy + Delta-G solvation = -28285.460945 eV Core-core repulsion = 24183.133380 eV Total energy + Delta-G solvation = -4102.327565 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.96146 -40.38738 -40.12680 -38.19313 -36.02576 -35.51376 -35.27282 -33.26933 -33.18684 -31.40283 -30.18036 -29.04440 -27.74068 -27.06734 -26.02863 -24.71736 -22.88744 -22.31971 -21.60081 -21.02294 -20.90984 -19.84373 -18.22587 -17.67102 -17.33289 -17.20280 -17.08467 -16.61286 -16.54350 -16.18399 -15.99821 -15.65512 -15.62231 -15.21856 -15.01142 -14.66915 -14.61485 -14.44924 -14.01109 -13.80693 -13.77847 -13.70392 -13.43833 -13.38134 -13.03162 -13.01309 -12.91128 -12.57277 -12.55562 -12.47239 -12.40855 -12.17797 -12.13884 -12.07948 -11.82362 -11.71606 -11.44579 -10.97112 -10.28264 -10.09852 -9.98362 -9.66854 -9.45322 -9.23796 -8.45189 -5.93448 0.45106 0.51177 1.40392 1.42367 1.52837 1.65151 2.04255 2.07742 2.31554 2.84422 2.94706 3.21988 3.43302 3.68060 3.86009 3.90199 4.01354 4.06009 4.08221 4.23085 4.26119 4.29083 4.33935 4.37276 4.47143 4.52379 4.53634 4.62516 4.63553 4.64208 4.69148 4.78592 4.84951 4.88310 4.93286 4.97087 5.04542 5.13043 5.20922 5.26097 5.34525 5.41173 5.42645 5.61326 5.72413 5.75911 5.85811 6.05321 6.16752 6.17447 6.56601 6.63045 7.15094 7.27836 7.58761 8.15351 8.71901 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.033838 B = 0.001237 C = 0.001233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.269885 B =22620.986045 C =22703.312140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.094 4.094 3 C -0.136 4.136 4 C -0.121 4.121 5 C -0.135 4.135 6 C -0.083 4.083 7 C -0.062 4.062 8 C -0.121 4.121 9 C 0.508 3.492 10 O -0.589 6.589 11 N -0.715 5.715 12 C 0.129 3.871 13 C 0.053 3.947 14 N -0.540 5.540 15 C 0.025 3.975 16 C 0.061 3.939 17 C 0.438 3.562 18 O -0.617 6.617 19 N -0.573 5.573 20 C -0.334 4.334 21 H 0.077 0.923 22 C -0.010 4.010 23 N -0.920 5.920 24 Si 0.990 3.010 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.273 1.273 28 C -0.131 4.131 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.129 0.871 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.418 0.582 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.099 0.901 44 H 0.035 0.965 45 H 0.055 0.945 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.115 0.885 49 H 0.397 0.603 50 H 0.277 0.723 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.972 26.563 9.678 35.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.154 4.154 4 C -0.138 4.138 5 C -0.153 4.153 6 C -0.083 4.083 7 C -0.100 4.100 8 C -0.161 4.161 9 C 0.296 3.704 10 O -0.469 6.469 11 N -0.369 5.369 12 C 0.004 3.996 13 C -0.075 4.075 14 N -0.265 5.265 15 C -0.123 4.123 16 C -0.070 4.070 17 C 0.226 3.774 18 O -0.503 6.503 19 N -0.211 5.211 20 C -0.464 4.464 21 H 0.095 0.905 22 C -0.210 4.210 23 N -0.560 5.560 24 Si 0.814 3.186 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.199 1.199 28 C -0.149 4.149 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.147 0.853 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.256 0.744 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.117 0.883 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.133 0.867 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -20.107 25.855 11.217 34.620 hybrid contribution 0.048 -0.801 -1.196 1.440 sum -20.058 25.055 10.021 33.623 Atomic orbital electron populations 1.20839 0.89888 1.03400 1.03017 1.20219 0.97222 0.93082 0.98887 1.21329 0.94576 0.98206 1.01287 1.21404 0.94614 0.98558 0.99260 1.21264 1.00539 0.92146 1.01311 1.19874 0.93854 0.94755 0.99797 1.20241 1.00151 0.93658 0.95916 1.21628 1.02229 0.93215 0.98989 1.21318 0.78853 0.87246 0.82959 1.90718 1.56486 1.66639 1.33089 1.45809 1.57817 1.23788 1.09462 1.21071 0.96081 0.85361 0.97083 1.22254 0.98142 0.91456 0.95640 1.61336 1.40446 1.03504 1.21232 1.22458 0.94941 0.95172 0.99735 1.21733 0.97673 0.97111 0.90493 1.20846 0.85308 0.87338 0.83916 1.90475 1.66225 1.63720 1.29864 1.41907 1.40857 1.29996 1.08313 1.19614 1.22392 1.09561 0.94813 0.90475 1.25974 0.99626 1.01371 0.94037 1.69657 1.45015 1.42889 0.98488 0.85033 0.78103 0.77812 0.77655 1.19810 1.19424 1.19862 1.21142 0.93638 0.98308 1.01763 0.90390 0.91214 0.90728 0.84641 0.84436 0.85282 0.91395 0.91389 0.86530 0.86555 0.74421 0.92894 0.92630 0.92020 0.88309 0.94627 0.92573 0.90948 0.90913 0.86705 0.76943 0.91322 0.85443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.01 71.24 0.71 -0.17 16 2 C -0.09 -1.14 5.88 -19.87 -0.12 -1.26 16 3 C -0.14 -1.56 9.70 22.27 0.22 -1.35 16 4 C -0.12 -1.41 10.05 22.27 0.22 -1.19 16 5 C -0.13 -1.78 9.70 22.27 0.22 -1.56 16 6 C -0.08 -1.17 5.13 -19.87 -0.10 -1.27 16 7 C -0.06 -0.94 4.63 29.85 0.14 -0.80 16 8 C -0.12 -1.42 5.68 29.85 0.17 -1.25 16 9 C 0.51 10.02 7.83 87.66 0.69 10.71 16 10 O -0.59 -17.78 15.98 -3.02 -0.05 -17.82 16 11 N -0.72 -11.53 5.56 -463.05 -2.57 -14.10 16 12 C 0.13 2.89 5.60 86.38 0.48 3.38 16 13 C 0.05 1.09 5.07 86.30 0.44 1.53 16 14 N -0.54 -16.82 4.50 -927.04 -4.17 -21.00 16 15 C 0.02 0.80 8.96 127.69 1.14 1.94 16 16 C 0.06 2.00 5.45 85.56 0.47 2.47 16 17 C 0.44 20.67 7.47 87.66 0.66 21.32 16 18 O -0.62 -34.19 13.91 -3.06 -0.04 -34.24 16 19 N -0.57 -29.10 5.29 -306.98 -1.62 -30.72 16 20 C -0.33 -18.96 9.68 84.04 0.81 -18.15 16 21 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 22 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 23 N -0.92 -49.19 13.05 21.66 0.28 -48.90 16 24 Si 0.99 42.95 29.55 68.60 2.03 44.97 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 28 C -0.13 -1.75 9.36 22.27 0.21 -1.54 16 29 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.49 8.09 -2.39 -0.02 0.47 16 31 H 0.07 0.44 8.09 -2.38 -0.02 0.42 16 32 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 33 H 0.14 1.06 8.06 -2.91 -0.02 1.04 16 34 H 0.13 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.07 1.21 8.04 -2.38 -0.02 1.19 16 36 H 0.07 1.19 8.04 -2.39 -0.02 1.17 16 37 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.42 3.55 8.47 -92.71 -0.79 2.76 16 40 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.06 1.42 6.55 -2.39 -0.02 1.40 16 42 H 0.06 1.02 8.12 -2.38 -0.02 1.00 16 43 H 0.10 1.69 7.93 -2.39 -0.02 1.67 16 44 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.06 2.29 5.82 -2.39 -0.01 2.27 16 46 H 0.07 2.13 6.47 -2.38 -0.02 2.12 16 47 H 0.07 2.07 8.12 -2.39 -0.02 2.05 16 48 H 0.11 3.20 7.93 -2.39 -0.02 3.18 16 49 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16 50 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 51 H 0.13 1.45 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -76.31 422.86 0.09 -76.21 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: -0.58 Total: 32.86 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 6.82 Total: 12.73 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -8.08 Total: -114.72 kcal Atomic # 8 Polarization: -51.97 SS G_CDS: -0.09 Total: -52.06 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -76.31 0.09 -76.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663239833.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.056 kcal (2) G-P(sol) polarization free energy of solvation -76.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds