Wall clock time and date at job start Wed Apr 1 2020 04:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 120.00078 * 2 1 4 4 H 1.48497 * 109.46972 * 269.99765 * 3 2 1 5 5 H 1.48503 * 109.46859 * 29.99798 * 3 2 1 6 6 H 1.48495 * 109.47011 * 149.99695 * 3 2 1 7 7 C 1.38814 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99706 * 174.14060 * 7 2 1 9 9 N 1.36931 * 119.99969 * 354.13972 * 7 2 1 10 10 C 1.46923 * 120.63409 * 321.84141 * 9 7 2 11 11 C 1.53197 * 108.77678 * 233.58557 * 10 9 7 12 12 C 1.53038 * 109.31104 * 305.36246 * 11 10 9 13 13 C 1.53047 * 109.53942 * 61.36170 * 12 11 10 14 14 C 1.52995 * 109.52454 * 178.66572 * 13 12 11 15 15 O 1.42901 * 109.47206 * 185.26472 * 14 13 12 16 16 N 1.46505 * 109.49015 * 58.58771 * 13 12 11 17 17 C 1.34769 * 119.99981 * 60.76479 * 16 13 12 18 18 O 1.21278 * 120.00529 * 355.58387 * 17 16 13 19 19 C 1.50707 * 119.99851 * 175.58963 * 17 16 13 20 20 C 1.52996 * 109.47242 * 179.97438 * 19 17 16 21 21 C 1.53004 * 109.47291 * 179.97438 * 20 19 17 22 22 C 1.50701 * 109.47168 * 179.97438 * 21 20 19 23 23 C 1.38232 * 119.61333 * 124.97813 * 22 21 20 24 24 C 1.38632 * 119.15359 * 180.02562 * 23 22 21 25 25 C 1.38664 * 118.42412 * 359.75486 * 24 23 22 26 26 C 1.38186 * 119.16185 * 0.48715 * 25 24 23 27 27 N 1.31851 * 119.61741 * 304.99824 * 22 21 20 28 28 C 1.46930 * 120.62987 * 141.81257 * 9 7 2 29 29 H 0.97005 * 120.00088 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.58862 * 353.37350 * 10 9 7 31 31 H 1.09003 * 109.58988 * 113.65071 * 10 9 7 32 32 H 1.08994 * 109.49635 * 65.31260 * 11 10 9 33 33 H 1.09001 * 109.49652 * 185.38049 * 11 10 9 34 34 H 1.08998 * 109.46125 * 301.34470 * 12 11 10 35 35 H 1.09002 * 109.46233 * 181.38653 * 12 11 10 36 36 H 1.09002 * 109.47514 * 305.26644 * 14 13 12 37 37 H 1.09005 * 109.47198 * 65.26248 * 14 13 12 38 38 H 0.96700 * 114.00205 * 180.02562 * 15 14 13 39 39 H 0.97007 * 119.99618 * 240.75621 * 16 13 12 40 40 H 1.08995 * 109.47615 * 59.98965 * 19 17 16 41 41 H 1.09005 * 109.46597 * 299.99434 * 19 17 16 42 42 H 1.09002 * 109.47097 * 59.99779 * 20 19 17 43 43 H 1.08999 * 109.47308 * 299.99828 * 20 19 17 44 44 H 1.08993 * 109.46665 * 59.99493 * 21 20 19 45 45 H 1.09005 * 109.46769 * 299.99891 * 21 20 19 46 46 H 1.07994 * 120.42052 * 359.97438 * 23 22 21 47 47 H 1.08004 * 120.78331 * 180.02562 * 24 23 22 48 48 H 1.08001 * 120.42002 * 180.24134 * 25 24 23 49 49 H 1.07999 * 119.61676 * 179.77727 * 26 25 24 50 50 H 1.08998 * 109.58347 * 6.63002 * 28 9 7 51 51 H 1.08996 * 109.71067 * 246.27416 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0860 -1.2046 -0.0949 9 7 1.3309 -2.3849 0.1221 10 6 0.1700 -2.4929 1.0161 11 6 0.3909 -3.6703 1.9711 12 6 0.6778 -4.9346 1.1579 13 6 1.9521 -4.7351 0.3340 14 6 2.2569 -6.0111 -0.4533 15 8 3.5099 -5.8682 -1.1254 16 7 3.0714 -4.4343 1.2301 17 6 3.4425 -5.3278 2.1683 18 8 2.8009 -6.3450 2.3244 19 6 4.6547 -5.0627 3.0236 20 6 4.8533 -6.2234 4.0004 21 6 6.0844 -5.9547 4.8683 22 6 6.2797 -7.0977 5.8309 23 6 7.4911 -7.7626 5.8649 24 6 7.6601 -8.8131 6.7537 25 6 6.6016 -9.1536 7.5821 26 6 5.4182 -8.4462 7.4879 27 7 5.2929 -7.4521 6.6304 28 6 1.7488 -3.5699 -0.6394 29 1 -0.4850 0.8401 -0.0004 30 1 0.0635 -1.5722 1.5897 31 1 -0.7309 -2.6621 0.4263 32 1 1.2384 -3.4564 2.6222 33 1 -0.5035 -3.8211 2.5756 34 1 -0.1595 -5.1340 0.4891 35 1 0.8110 -5.7790 1.8342 36 1 2.3064 -6.8576 0.2316 37 1 1.4687 -6.1827 -1.1865 38 1 3.7674 -6.6414 -1.6459 39 1 3.5455 -3.5919 1.1480 40 1 4.5099 -4.1384 3.5828 41 1 5.5347 -4.9683 2.3873 42 1 4.9981 -7.1480 3.4414 43 1 3.9733 -6.3176 4.6367 44 1 5.9400 -5.0301 5.4271 45 1 6.9643 -5.8609 4.2317 46 1 8.2952 -7.4681 5.2070 47 1 8.5956 -9.3505 6.8027 48 1 6.6994 -9.9640 8.2893 49 1 4.5878 -8.7076 8.1271 50 1 2.6841 -3.3597 -1.1581 51 1 0.9789 -3.8305 -1.3656 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672502898.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:14 Heat of formation + Delta-G solvation = -43.622981 kcal Electronic energy + Delta-G solvation = -31161.265190 eV Core-core repulsion = 27060.526776 eV Total energy + Delta-G solvation = -4100.738414 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.43812 -39.95060 -37.55487 -35.99096 -35.01631 -33.73748 -32.63389 -32.28768 -31.47775 -30.42355 -29.82079 -27.36159 -25.39787 -25.01044 -23.89705 -23.30180 -22.14754 -21.43228 -20.70364 -19.84090 -18.59189 -17.23105 -16.94052 -16.72178 -16.62643 -16.41898 -15.68360 -15.46959 -15.20292 -14.83711 -14.50063 -14.24642 -13.99366 -13.84407 -13.59402 -13.42801 -13.22763 -13.05837 -12.87435 -12.63172 -12.37224 -12.24441 -11.92775 -11.81554 -11.69719 -11.41978 -11.25193 -11.09594 -10.96987 -10.77174 -10.69868 -10.41535 -10.14804 -10.11458 -10.06721 -9.78144 -9.62098 -9.58933 -9.48822 -9.18661 -8.92678 -8.48885 -8.34886 -6.52562 -5.81029 -3.36819 0.86467 1.03797 3.15589 3.35165 3.42000 3.42708 3.53750 3.72671 4.08969 4.43166 4.45352 4.55858 4.58574 4.79899 4.86089 5.00209 5.07273 5.11118 5.34140 5.37221 5.38718 5.41939 5.48864 5.52902 5.65926 5.68210 5.69825 5.74068 5.82432 5.86038 5.87389 5.91853 6.04133 6.10382 6.23435 6.35706 6.40303 6.48507 6.50465 6.56666 6.72114 6.77869 6.87465 6.97055 7.21854 7.42062 7.69241 7.77294 7.80845 7.88994 8.19311 8.49329 8.80086 9.21581 9.79460 10.42799 11.26519 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013277 B = 0.002432 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.459847 B =11509.338756 C =12316.177433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.013 3.987 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.260 4.260 8 H 0.061 0.939 9 N -0.587 5.587 10 C 0.173 3.827 11 C -0.135 4.135 12 C -0.120 4.120 13 C 0.167 3.833 14 C 0.067 3.933 15 O -0.565 6.565 16 N -0.690 5.690 17 C 0.515 3.485 18 O -0.556 6.556 19 C -0.142 4.142 20 C -0.090 4.090 21 C -0.073 4.073 22 C 0.137 3.863 23 C -0.173 4.173 24 C -0.075 4.075 25 C -0.185 4.185 26 C 0.103 3.897 27 N -0.477 5.477 28 C 0.148 3.852 29 H 0.255 0.745 30 H 0.078 0.922 31 H 0.018 0.982 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.045 0.955 38 H 0.369 0.631 39 H 0.405 0.595 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.134 0.866 47 H 0.132 0.868 48 H 0.132 0.868 49 H 0.155 0.845 50 H 0.065 0.935 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.127 -16.529 9.662 23.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.187 4.187 3 Si 0.732 3.268 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.390 4.390 8 H 0.078 0.922 9 N -0.310 5.310 10 C 0.048 3.952 11 C -0.174 4.174 12 C -0.158 4.158 13 C 0.079 3.921 14 C -0.012 4.012 15 O -0.368 6.368 16 N -0.339 5.339 17 C 0.301 3.699 18 O -0.436 6.436 19 C -0.183 4.183 20 C -0.128 4.128 21 C -0.111 4.111 22 C 0.000 4.000 23 C -0.193 4.193 24 C -0.101 4.101 25 C -0.204 4.204 26 C -0.054 4.054 27 N -0.187 5.187 28 C 0.021 3.979 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.214 0.786 39 H 0.240 0.760 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.152 0.848 47 H 0.150 0.850 48 H 0.150 0.850 49 H 0.172 0.828 50 H 0.084 0.916 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 11.733 -16.011 9.994 22.224 hybrid contribution 1.384 0.205 -0.289 1.428 sum 13.117 -15.806 9.705 22.717 Atomic orbital electron populations 1.69963 1.05395 1.25596 1.53174 1.25366 0.95400 0.98493 0.99421 0.86310 0.79145 0.83602 0.77719 1.21293 1.21663 1.20346 1.19036 0.89916 0.83267 1.46746 0.92170 1.43926 1.33955 1.06697 1.46396 1.20751 0.88668 0.95301 0.90482 1.22088 0.99903 0.96619 0.98833 1.21759 0.95421 0.99507 0.99146 1.20932 0.86201 0.94775 0.90214 1.22636 0.85106 0.98791 0.94685 1.86512 1.38895 1.43539 1.67895 1.45805 1.33841 1.20586 1.33695 1.20469 0.85651 0.83421 0.80314 1.90580 1.55350 1.28003 1.69635 1.21678 0.97319 1.00873 0.98383 1.21174 0.97611 0.97450 0.96546 1.20638 0.99761 0.95223 0.95453 1.21348 0.89063 0.95694 0.93911 1.22024 0.98860 0.97620 1.00825 1.21578 0.98914 0.95668 0.93955 1.22126 0.94927 1.02080 1.01312 1.22798 0.96725 0.90908 0.94985 1.67517 1.31756 1.14657 1.04730 1.21116 0.98797 0.86611 0.91396 0.93538 0.90364 0.96381 0.92822 0.93453 0.92388 0.90899 0.92199 0.93671 0.78614 0.75970 0.89062 0.89294 0.91696 0.90092 0.89723 0.90267 0.84816 0.85003 0.84987 0.82800 0.91618 0.95326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.63 11.31 55.49 0.63 -25.00 16 2 C 0.01 0.36 5.12 -17.43 -0.09 0.27 16 3 Si 0.90 21.14 29.56 -169.99 -5.02 16.12 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.26 -6.81 9.51 -15.06 -0.14 -6.95 16 8 H 0.06 1.54 7.83 -52.49 -0.41 1.13 16 9 N -0.59 -14.16 2.84 -172.32 -0.49 -14.65 16 10 C 0.17 4.12 5.21 -3.71 -0.02 4.10 16 11 C -0.14 -2.71 5.93 -26.61 -0.16 -2.87 16 12 C -0.12 -2.23 4.48 -26.69 -0.12 -2.35 16 13 C 0.17 3.02 0.45 -131.70 -0.06 2.96 16 14 C 0.07 1.07 5.63 37.15 0.21 1.28 16 15 O -0.56 -8.46 13.08 -35.23 -0.46 -8.92 16 16 N -0.69 -11.85 3.94 -47.49 -0.19 -12.04 16 17 C 0.51 8.41 7.24 -10.99 -0.08 8.33 16 18 O -0.56 -10.43 12.29 5.56 0.07 -10.36 16 19 C -0.14 -1.77 5.70 -27.88 -0.16 -1.93 16 20 C -0.09 -1.10 4.36 -26.73 -0.12 -1.21 16 21 C -0.07 -0.71 5.61 -27.88 -0.16 -0.87 16 22 C 0.14 1.48 6.18 -82.59 -0.51 0.97 16 23 C -0.17 -1.50 9.71 -39.44 -0.38 -1.88 16 24 C -0.08 -0.57 10.18 -39.28 -0.40 -0.97 16 25 C -0.18 -1.41 10.11 -39.44 -0.40 -1.81 16 26 C 0.10 0.98 11.18 -17.55 -0.20 0.79 16 27 N -0.48 -5.77 9.88 -9.47 -0.09 -5.87 16 28 C 0.15 3.10 5.07 -3.71 -0.02 3.08 16 29 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.08 2.07 6.50 -51.93 -0.34 1.73 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 1.11 7.53 -51.93 -0.39 0.72 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.40 6.12 -51.93 -0.32 1.08 16 36 H 0.06 1.01 6.44 -51.93 -0.33 0.67 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.37 3.77 9.12 45.56 0.42 4.18 16 39 H 0.41 7.09 8.45 -40.82 -0.34 6.74 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.87 8.10 -51.93 -0.42 0.44 16 43 H 0.08 1.18 7.90 -51.93 -0.41 0.77 16 44 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.08 0.60 7.87 -51.93 -0.41 0.20 16 46 H 0.13 0.85 7.95 -52.49 -0.42 0.44 16 47 H 0.13 0.64 8.06 -52.48 -0.42 0.21 16 48 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 49 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 50 H 0.07 1.40 7.78 -51.93 -0.40 1.00 16 51 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 405.12 15.07 6.11 6.11 Total: -1.00 -32.60 405.12 -9.82 -42.42 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -7.57 Total: 11.27 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -2.80 Total: 0.92 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.14 Total: -57.56 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.39 Total: -19.28 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.60 -9.82 -42.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672502898.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.200 kcal (2) G-P(sol) polarization free energy of solvation -32.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds