Wall clock time and date at job start Wed Apr 1 2020 04:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 120.00078 * 2 1 4 4 H 1.48497 * 109.46972 * 269.99765 * 3 2 1 5 5 H 1.48503 * 109.46859 * 29.99798 * 3 2 1 6 6 H 1.48495 * 109.47011 * 149.99695 * 3 2 1 7 7 C 1.38814 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99706 * 174.14060 * 7 2 1 9 9 N 1.36931 * 119.99969 * 354.13972 * 7 2 1 10 10 C 1.46923 * 120.63409 * 321.84141 * 9 7 2 11 11 C 1.53197 * 108.77678 * 233.58557 * 10 9 7 12 12 C 1.53038 * 109.31104 * 305.36246 * 11 10 9 13 13 C 1.53047 * 109.53942 * 61.36170 * 12 11 10 14 14 C 1.52995 * 109.52454 * 178.66572 * 13 12 11 15 15 O 1.42901 * 109.47206 * 185.26472 * 14 13 12 16 16 N 1.46505 * 109.49015 * 58.58771 * 13 12 11 17 17 C 1.34769 * 119.99981 * 60.76479 * 16 13 12 18 18 O 1.21278 * 120.00529 * 355.58387 * 17 16 13 19 19 C 1.50707 * 119.99851 * 175.58963 * 17 16 13 20 20 C 1.52996 * 109.47242 * 179.97438 * 19 17 16 21 21 C 1.53004 * 109.47291 * 179.97438 * 20 19 17 22 22 C 1.50701 * 109.47168 * 179.97438 * 21 20 19 23 23 C 1.38232 * 119.61333 * 124.97813 * 22 21 20 24 24 C 1.38632 * 119.15359 * 180.02562 * 23 22 21 25 25 C 1.38664 * 118.42412 * 359.75486 * 24 23 22 26 26 C 1.38186 * 119.16185 * 0.48715 * 25 24 23 27 27 N 1.31851 * 119.61741 * 304.99824 * 22 21 20 28 28 C 1.46930 * 120.62987 * 141.81257 * 9 7 2 29 29 H 0.97005 * 120.00088 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.58862 * 353.37350 * 10 9 7 31 31 H 1.09003 * 109.58988 * 113.65071 * 10 9 7 32 32 H 1.08994 * 109.49635 * 65.31260 * 11 10 9 33 33 H 1.09001 * 109.49652 * 185.38049 * 11 10 9 34 34 H 1.08998 * 109.46125 * 301.34470 * 12 11 10 35 35 H 1.09002 * 109.46233 * 181.38653 * 12 11 10 36 36 H 1.09002 * 109.47514 * 305.26644 * 14 13 12 37 37 H 1.09005 * 109.47198 * 65.26248 * 14 13 12 38 38 H 0.96700 * 114.00205 * 180.02562 * 15 14 13 39 39 H 0.97007 * 119.99618 * 240.75621 * 16 13 12 40 40 H 1.08995 * 109.47615 * 59.98965 * 19 17 16 41 41 H 1.09005 * 109.46597 * 299.99434 * 19 17 16 42 42 H 1.09002 * 109.47097 * 59.99779 * 20 19 17 43 43 H 1.08999 * 109.47308 * 299.99828 * 20 19 17 44 44 H 1.08993 * 109.46665 * 59.99493 * 21 20 19 45 45 H 1.09005 * 109.46769 * 299.99891 * 21 20 19 46 46 H 1.07994 * 120.42052 * 359.97438 * 23 22 21 47 47 H 1.08004 * 120.78331 * 180.02562 * 24 23 22 48 48 H 1.08001 * 120.42002 * 180.24134 * 25 24 23 49 49 H 1.07999 * 119.61676 * 179.77727 * 26 25 24 50 50 H 1.08998 * 109.58347 * 6.63002 * 28 9 7 51 51 H 1.08996 * 109.71067 * 246.27416 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0860 -1.2046 -0.0949 9 7 1.3309 -2.3849 0.1221 10 6 0.1700 -2.4929 1.0161 11 6 0.3909 -3.6703 1.9711 12 6 0.6778 -4.9346 1.1579 13 6 1.9521 -4.7351 0.3340 14 6 2.2569 -6.0111 -0.4533 15 8 3.5099 -5.8682 -1.1254 16 7 3.0714 -4.4343 1.2301 17 6 3.4425 -5.3278 2.1683 18 8 2.8009 -6.3450 2.3244 19 6 4.6547 -5.0627 3.0236 20 6 4.8533 -6.2234 4.0004 21 6 6.0844 -5.9547 4.8683 22 6 6.2797 -7.0977 5.8309 23 6 7.4911 -7.7626 5.8649 24 6 7.6601 -8.8131 6.7537 25 6 6.6016 -9.1536 7.5821 26 6 5.4182 -8.4462 7.4879 27 7 5.2929 -7.4521 6.6304 28 6 1.7488 -3.5699 -0.6394 29 1 -0.4850 0.8401 -0.0004 30 1 0.0635 -1.5722 1.5897 31 1 -0.7309 -2.6621 0.4263 32 1 1.2384 -3.4564 2.6222 33 1 -0.5035 -3.8211 2.5756 34 1 -0.1595 -5.1340 0.4891 35 1 0.8110 -5.7790 1.8342 36 1 2.3064 -6.8576 0.2316 37 1 1.4687 -6.1827 -1.1865 38 1 3.7674 -6.6414 -1.6459 39 1 3.5455 -3.5919 1.1480 40 1 4.5099 -4.1384 3.5828 41 1 5.5347 -4.9683 2.3873 42 1 4.9981 -7.1480 3.4414 43 1 3.9733 -6.3176 4.6367 44 1 5.9400 -5.0301 5.4271 45 1 6.9643 -5.8609 4.2317 46 1 8.2952 -7.4681 5.2070 47 1 8.5956 -9.3505 6.8027 48 1 6.6994 -9.9640 8.2893 49 1 4.5878 -8.7076 8.1271 50 1 2.6841 -3.3597 -1.1581 51 1 0.9789 -3.8305 -1.3656 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672502898.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:13 Heat of formation + Delta-G solvation = -65.637677 kcal Electronic energy + Delta-G solvation = -31162.219819 eV Core-core repulsion = 27060.526776 eV Total energy + Delta-G solvation = -4101.693043 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.41643 -41.03428 -39.01953 -37.37288 -35.94101 -35.35850 -33.90425 -33.26670 -32.46427 -32.27357 -31.23294 -28.24498 -27.26844 -26.58262 -24.63643 -24.15549 -23.88362 -22.54972 -22.01401 -21.18717 -20.06945 -18.65807 -18.21288 -18.09224 -17.55963 -17.18847 -16.88190 -16.60770 -16.53305 -16.26662 -15.82243 -15.52136 -15.27437 -15.08922 -14.74063 -14.64128 -14.60860 -14.24167 -14.11082 -13.92896 -13.86266 -13.42625 -13.24387 -12.95925 -12.86827 -12.78615 -12.74648 -12.50530 -12.49151 -12.21209 -12.14792 -11.99730 -11.76036 -11.64377 -11.48230 -11.20564 -10.96614 -10.75947 -10.54164 -10.36454 -10.24090 -9.83324 -9.74790 -8.51370 -7.84811 -5.43823 0.22481 0.42577 1.49768 1.50434 1.59332 1.87588 2.40663 2.51781 2.90990 3.32083 3.33635 3.44171 3.67394 3.75745 3.84211 4.04820 4.06867 4.12208 4.16854 4.24062 4.27979 4.30485 4.33310 4.36597 4.54432 4.57444 4.64678 4.69135 4.76363 4.77284 4.81036 4.88192 4.90084 4.92930 5.00327 5.02510 5.08996 5.18835 5.21046 5.30689 5.32027 5.36592 5.45481 5.52923 5.67815 5.72093 5.81997 5.86992 6.45839 6.84161 6.93443 7.14401 7.18824 7.48438 7.82862 8.42334 9.20810 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013277 B = 0.002432 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.459847 B =11509.338756 C =12316.177433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.042 4.042 3 Si 0.967 3.033 4 H -0.286 1.286 5 H -0.298 1.298 6 H -0.264 1.264 7 C -0.262 4.262 8 H 0.068 0.932 9 N -0.599 5.599 10 C 0.185 3.815 11 C -0.122 4.122 12 C -0.113 4.113 13 C 0.170 3.830 14 C 0.078 3.922 15 O -0.575 6.575 16 N -0.692 5.692 17 C 0.511 3.489 18 O -0.582 6.582 19 C -0.134 4.134 20 C -0.077 4.077 21 C -0.066 4.066 22 C 0.109 3.891 23 C -0.176 4.176 24 C -0.078 4.078 25 C -0.180 4.180 26 C 0.079 3.921 27 N -0.518 5.518 28 C 0.154 3.846 29 H 0.249 0.751 30 H 0.046 0.954 31 H -0.004 1.004 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.391 0.609 39 H 0.404 0.596 40 H 0.102 0.898 41 H 0.115 0.885 42 H 0.050 0.950 43 H 0.049 0.951 44 H 0.084 0.916 45 H 0.105 0.895 46 H 0.157 0.843 47 H 0.163 0.837 48 H 0.160 0.840 49 H 0.166 0.834 50 H 0.062 0.938 51 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.010 -17.712 9.981 25.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.238 4.238 3 Si 0.795 3.205 4 H -0.213 1.213 5 H -0.224 1.224 6 H -0.188 1.188 7 C -0.392 4.392 8 H 0.086 0.914 9 N -0.322 5.322 10 C 0.059 3.941 11 C -0.161 4.161 12 C -0.152 4.152 13 C 0.082 3.918 14 C -0.001 4.001 15 O -0.382 6.382 16 N -0.341 5.341 17 C 0.299 3.701 18 O -0.463 6.463 19 C -0.174 4.174 20 C -0.116 4.116 21 C -0.104 4.104 22 C -0.028 4.028 23 C -0.196 4.196 24 C -0.104 4.104 25 C -0.200 4.200 26 C -0.077 4.077 27 N -0.228 5.228 28 C 0.027 3.973 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.014 0.986 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.240 0.760 39 H 0.239 0.761 40 H 0.120 0.880 41 H 0.133 0.867 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.103 0.897 45 H 0.124 0.876 46 H 0.175 0.825 47 H 0.181 0.819 48 H 0.178 0.822 49 H 0.183 0.817 50 H 0.080 0.920 51 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 14.652 -17.231 10.305 24.856 hybrid contribution 0.500 0.476 -0.389 0.792 sum 15.152 -16.756 9.916 24.671 Atomic orbital electron populations 1.70129 1.06882 1.25851 1.54971 1.26111 0.96114 1.01738 0.99880 0.85285 0.78287 0.79445 0.77446 1.21304 1.22441 1.18821 1.19384 0.90461 0.84069 1.45267 0.91411 1.44083 1.33741 1.07265 1.47148 1.20498 0.87991 0.95220 0.90405 1.21902 1.00244 0.95823 0.98117 1.21688 0.96115 0.98317 0.99071 1.20765 0.86513 0.94557 0.89974 1.22403 0.86098 0.96899 0.94748 1.86451 1.38260 1.45273 1.68219 1.45821 1.33549 1.20767 1.33955 1.21112 0.86313 0.82642 0.80013 1.90569 1.56435 1.29046 1.70273 1.21694 0.96305 1.01244 0.98136 1.20994 0.97711 0.96760 0.96085 1.20611 0.99354 0.95137 0.95302 1.21570 0.89958 0.96692 0.94552 1.22320 0.98585 0.97468 1.01209 1.22020 1.00018 0.95289 0.93094 1.22461 0.94106 1.02052 1.01381 1.23153 0.98253 0.91101 0.95215 1.67455 1.33154 1.16152 1.06022 1.21104 0.98134 0.86324 0.91693 0.94166 0.93547 0.98558 0.93392 0.92209 0.91859 0.90986 0.92782 0.92371 0.76017 0.76103 0.87979 0.86689 0.93087 0.93206 0.89730 0.87627 0.82519 0.81930 0.82211 0.81672 0.91966 0.95947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.60 11.31 21.65 0.24 -54.35 16 2 C -0.04 -2.29 5.12 84.86 0.43 -1.86 16 3 Si 0.97 43.68 29.56 68.60 2.03 45.70 16 4 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.26 -13.72 9.51 84.04 0.80 -12.92 16 8 H 0.07 3.40 7.83 -2.91 -0.02 3.38 16 9 N -0.60 -29.13 2.84 -699.10 -1.99 -31.12 16 10 C 0.18 8.97 5.21 86.36 0.45 9.42 16 11 C -0.12 -4.91 5.93 30.67 0.18 -4.72 16 12 C -0.11 -4.17 4.48 30.62 0.14 -4.04 16 13 C 0.17 6.02 0.45 3.68 0.00 6.02 16 14 C 0.08 2.37 5.63 71.98 0.41 2.77 16 15 O -0.58 -15.98 13.08 -148.98 -1.95 -17.93 16 16 N -0.69 -23.07 3.94 -422.57 -1.67 -24.73 16 17 C 0.51 16.19 7.24 87.66 0.64 16.83 16 18 O -0.58 -21.59 12.29 -3.02 -0.04 -21.63 16 19 C -0.13 -3.12 5.70 29.85 0.17 -2.95 16 20 C -0.08 -1.85 4.36 30.59 0.13 -1.71 16 21 C -0.07 -1.21 5.61 29.85 0.17 -1.04 16 22 C 0.11 2.26 6.18 42.55 0.26 2.53 16 23 C -0.18 -2.66 9.71 22.36 0.22 -2.45 16 24 C -0.08 -0.97 10.18 22.47 0.23 -0.74 16 25 C -0.18 -2.41 10.11 22.36 0.23 -2.19 16 26 C 0.08 1.49 11.18 84.67 0.95 2.43 16 27 N -0.52 -12.61 9.88 -183.88 -1.82 -14.43 16 28 C 0.15 6.37 5.07 86.36 0.44 6.81 16 29 H 0.25 14.20 8.31 -92.70 -0.77 13.43 16 30 H 0.05 2.54 6.50 -2.39 -0.02 2.52 16 31 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.05 1.98 7.53 -2.39 -0.02 1.96 16 33 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.07 2.72 6.12 -2.39 -0.01 2.70 16 36 H 0.05 1.74 6.44 -2.39 -0.02 1.72 16 37 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.39 6.99 9.12 -74.06 -0.68 6.31 16 39 H 0.40 13.66 8.45 -92.70 -0.78 12.88 16 40 H 0.10 2.19 8.14 -2.39 -0.02 2.18 16 41 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 42 H 0.05 1.34 8.10 -2.39 -0.02 1.33 16 43 H 0.05 1.50 7.90 -2.39 -0.02 1.48 16 44 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.11 1.32 7.87 -2.38 -0.02 1.30 16 46 H 0.16 1.50 7.95 -2.91 -0.02 1.48 16 47 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 48 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 49 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 50 H 0.06 2.61 7.78 -2.39 -0.02 2.59 16 51 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -72.02 405.12 0.14 -71.88 By element: Atomic # 1 Polarization: 34.94 SS G_CDS: -0.52 Total: 34.42 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 5.83 Total: 12.19 kcal Atomic # 7 Polarization: -119.41 SS G_CDS: -5.22 Total: -124.64 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -1.99 Total: -39.56 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -72.02 0.14 -71.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672502898.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.245 kcal (2) G-P(sol) polarization free energy of solvation -72.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds