Wall clock time and date at job start Wed Apr 1 2020 05:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99788 * 2 1 4 4 H 1.48500 * 109.46939 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47053 * 300.00097 * 3 2 1 6 6 H 1.48496 * 109.46981 * 60.00212 * 3 2 1 7 7 C 1.38810 * 120.00363 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00551 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99689 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00090 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47269 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.47194 * 304.99635 * 11 10 9 13 13 C 1.52999 * 109.46991 * 65.00478 * 11 10 9 14 14 C 1.52997 * 109.46991 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47131 * 299.99311 * 14 13 11 16 16 H 1.08996 * 109.47452 * 300.00000 * 15 14 13 17 17 N 1.46507 * 109.47258 * 179.97438 * 15 14 13 18 18 C 1.34778 * 119.99609 * 85.00044 * 17 15 14 19 19 O 1.21616 * 120.00298 * 0.02562 * 18 17 15 20 20 C 1.47419 * 119.99739 * 180.02562 * 18 17 15 21 21 C 1.36089 * 126.45024 * 180.02562 * 20 18 17 22 22 O 1.34256 * 106.95284 * 179.97438 * 21 20 18 23 23 C 1.34042 * 108.22432 * 0.02562 * 22 21 20 24 24 C 1.50701 * 125.37767 * 180.02562 * 23 22 21 25 25 C 1.53778 * 113.61651 * 39.10142 * 24 23 22 26 26 C 1.53954 * 87.02205 * 220.05259 * 25 24 23 27 27 C 1.53777 * 87.10996 * 25.36587 * 26 25 24 28 28 N 1.29937 * 109.24757 * 359.71859 * 23 22 21 29 29 C 1.53002 * 109.46972 * 60.00459 * 15 14 13 30 30 C 1.52997 * 109.46817 * 299.99733 * 29 15 14 31 31 H 0.97002 * 120.00534 * 0.02562 * 1 2 3 32 32 H 0.97002 * 120.00403 * 0.02562 * 9 7 2 33 33 H 1.09002 * 109.46913 * 59.99757 * 10 9 7 34 34 H 1.09001 * 109.46815 * 300.00334 * 10 9 7 35 35 H 1.09002 * 109.46719 * 299.99711 * 13 11 10 36 36 H 1.08993 * 109.47839 * 59.99553 * 13 11 10 37 37 H 1.09001 * 109.47289 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.47611 * 59.99933 * 14 13 11 39 39 H 0.97001 * 120.00071 * 265.00501 * 17 15 14 40 40 H 1.08004 * 126.52289 * 359.97438 * 21 20 18 41 41 H 1.09000 * 112.85262 * 170.30911 * 24 23 22 42 42 H 1.08998 * 113.61567 * 334.57582 * 25 24 23 43 43 H 1.09007 * 113.61344 * 105.47479 * 25 24 23 44 44 H 1.09006 * 113.53785 * 270.81260 * 26 25 24 45 45 H 1.08999 * 113.73888 * 139.94652 * 26 25 24 46 46 H 1.08999 * 113.61310 * 220.09067 * 27 26 25 47 47 H 1.08998 * 113.69516 * 89.19810 * 27 26 25 48 48 H 1.09002 * 109.47070 * 179.97438 * 29 15 14 49 49 H 1.08996 * 109.47407 * 59.99513 * 29 15 14 50 50 H 1.09001 * 109.47502 * 300.00518 * 30 29 15 51 51 H 1.09001 * 109.47289 * 180.02562 * 30 29 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.3802 -4.7127 0.8421 13 6 0.2687 -4.8115 -1.3070 14 6 -0.7259 -5.9741 -1.3061 15 6 0.0345 -7.2957 -1.1801 16 1 0.7182 -7.4032 -2.0221 17 7 -0.9180 -8.4089 -1.1786 18 6 -1.3570 -8.9217 -2.3452 19 8 -0.9621 -8.4606 -3.3990 20 6 -2.3158 -10.0414 -2.3437 21 6 -2.8420 -10.6568 -3.4375 22 8 -3.6646 -11.6180 -2.9882 23 6 -3.6450 -11.5938 -1.6481 24 6 -4.4304 -12.5118 -0.7473 25 6 -4.5001 -13.9617 -1.2551 26 6 -5.9682 -13.9686 -0.7918 27 6 -5.9504 -12.4413 -0.9702 28 7 -2.8370 -10.6580 -1.2484 29 6 0.8297 -7.3040 0.1270 30 6 1.8243 -6.1414 0.1261 31 1 -0.4851 0.8400 -0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 2.6848 -3.7144 0.8894 34 1 2.6848 -3.7144 -0.8905 35 1 -0.2734 -3.8701 -1.3965 36 1 0.9525 -4.9185 -2.1490 37 1 -1.2928 -5.9680 -2.2371 38 1 -1.4098 -5.8666 -0.4641 39 1 -1.2327 -8.7768 -0.3381 40 1 -2.6369 -10.4174 -4.4706 41 1 -4.1383 -12.4293 0.2996 42 1 -4.3826 -14.0523 -2.3349 43 1 -3.8627 -14.6499 -0.6998 44 1 -6.0966 -14.2858 0.2432 45 1 -6.6426 -14.4805 -1.4782 46 1 -6.4822 -11.9037 -0.1852 47 1 -6.2301 -12.1139 -1.9715 48 1 1.3711 -8.2457 0.2170 49 1 0.1460 -7.1964 0.9690 50 1 2.5081 -6.2488 -0.7160 51 1 2.3912 -6.1475 1.0571 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672987681.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:00 Heat of formation + Delta-G solvation = -6.435514 kcal Electronic energy + Delta-G solvation = -29622.205070 eV Core-core repulsion = 25523.079225 eV Total energy + Delta-G solvation = -4099.125845 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.84923 -40.03755 -39.18519 -38.21869 -35.28021 -35.15347 -33.56230 -31.42517 -30.98223 -30.57317 -29.00582 -26.68957 -26.29211 -25.47043 -24.09450 -22.82907 -22.36303 -22.02537 -21.02541 -20.55499 -19.93032 -19.44820 -18.35474 -17.18866 -17.09764 -16.94257 -16.39209 -16.11585 -15.74289 -15.10480 -14.68816 -14.63414 -14.15344 -14.06384 -13.90836 -13.72073 -13.41810 -13.20951 -13.18126 -13.03496 -13.02405 -12.33016 -12.16074 -11.94285 -11.86067 -11.66788 -11.59167 -11.23318 -11.12760 -11.09083 -10.96837 -10.95547 -10.87239 -10.73518 -10.44338 -10.19116 -10.11626 -9.98277 -9.74359 -9.56739 -9.38963 -9.02456 -8.80946 -6.84069 -5.70813 -2.98477 0.75613 1.61574 2.13478 2.89985 3.08802 3.41393 3.47057 3.52533 3.54891 3.88527 3.97568 4.20219 4.23565 4.46499 4.53635 4.64046 4.76797 4.88602 4.97406 5.05179 5.09996 5.13306 5.17668 5.26896 5.32033 5.33689 5.35964 5.39913 5.42306 5.55490 5.61396 5.63975 5.68754 5.70636 5.75663 5.78244 6.01319 6.10029 6.15695 6.30397 6.31527 6.33420 6.45196 6.52342 6.63448 6.80544 6.93365 7.03918 7.05050 7.41603 7.76221 8.01071 8.48636 9.59626 10.19443 10.53998 11.52342 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023469 B = 0.001607 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.751836 B =17420.361326 C =17599.837087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.157 3.843 11 C -0.095 4.095 12 H 0.070 0.930 13 C -0.106 4.106 14 C -0.127 4.127 15 C 0.145 3.855 16 H 0.089 0.911 17 N -0.706 5.706 18 C 0.601 3.399 19 O -0.535 6.535 20 C -0.070 4.070 21 C 0.011 3.989 22 O -0.194 6.194 23 C 0.209 3.791 24 C -0.021 4.021 25 C -0.133 4.133 26 C -0.139 4.139 27 C -0.131 4.131 28 N -0.459 5.459 29 C -0.122 4.122 30 C -0.106 4.106 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.017 0.983 34 H 0.018 0.982 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.407 0.593 40 H 0.232 0.768 41 H 0.134 0.866 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.064 0.936 49 H 0.068 0.932 50 H 0.064 0.936 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.943 -33.119 -2.073 34.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.029 3.971 11 C -0.114 4.114 12 H 0.088 0.912 13 C -0.144 4.144 14 C -0.165 4.165 15 C 0.041 3.959 16 H 0.108 0.892 17 N -0.356 5.356 18 C 0.386 3.614 19 O -0.412 6.412 20 C -0.190 4.190 21 C -0.063 4.063 22 O -0.080 6.080 23 C 0.000 4.000 24 C -0.040 4.040 25 C -0.171 4.171 26 C -0.177 4.177 27 C -0.169 4.169 28 N -0.189 5.189 29 C -0.160 4.160 30 C -0.145 4.145 31 H 0.063 0.937 32 H 0.218 0.782 33 H 0.035 0.965 34 H 0.036 0.964 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.242 0.758 40 H 0.248 0.752 41 H 0.151 0.849 42 H 0.108 0.892 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.095 0.905 46 H 0.099 0.901 47 H 0.106 0.894 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.083 0.917 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.364 -32.517 -2.194 34.199 hybrid contribution -0.091 0.803 -0.350 0.881 sum -10.456 -31.714 -2.544 33.490 Atomic orbital electron populations 1.69668 1.05082 1.25409 1.58179 1.24728 0.95515 0.97634 1.03300 0.86126 0.78784 0.84243 0.77126 1.20594 1.21940 1.21952 1.19298 0.91067 0.84286 1.42083 0.91206 1.42396 1.05869 1.00005 1.89356 1.20683 0.93245 0.85507 0.97631 1.21357 0.97719 0.94260 0.98071 0.91167 1.21487 0.97561 0.97897 0.97476 1.21932 0.98623 0.93856 1.02117 1.21172 0.90164 0.85158 0.99402 0.89245 1.45947 1.45914 1.35378 1.08358 1.16739 0.79650 0.80595 0.84462 1.90849 1.58048 1.61173 1.31097 1.21874 1.05157 1.02552 0.89440 1.25323 0.91599 0.88269 1.01098 1.84342 1.52817 1.46744 1.24093 1.26075 0.97641 0.97145 0.79171 1.21345 0.93784 0.91863 0.97006 1.23061 0.97665 0.94118 1.02238 1.22850 0.96509 0.95928 1.02373 1.23026 0.93097 0.97402 1.03390 1.70766 1.10245 1.07699 1.30171 1.21787 0.98475 0.99320 0.96466 1.21469 0.97298 0.93469 1.02268 0.93656 0.78249 0.96511 0.96389 0.90413 0.92071 0.91824 0.91881 0.75809 0.75220 0.84854 0.89220 0.90180 0.89381 0.90520 0.90065 0.89373 0.91685 0.91351 0.91713 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.82 13.06 55.49 0.72 -28.10 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -18.96 5.33 -59.91 -0.32 -19.28 16 10 C 0.16 3.23 5.65 -4.04 -0.02 3.21 16 11 C -0.10 -1.56 2.22 -90.62 -0.20 -1.76 16 12 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 13 C -0.11 -1.75 5.08 -26.73 -0.14 -1.89 16 14 C -0.13 -1.82 5.49 -26.73 -0.15 -1.97 16 15 C 0.14 1.83 2.45 -67.93 -0.17 1.66 16 16 H 0.09 1.26 7.58 -51.93 -0.39 0.86 16 17 N -0.71 -8.37 5.07 -54.88 -0.28 -8.65 16 18 C 0.60 7.96 7.78 -12.52 -0.10 7.87 16 19 O -0.53 -8.55 16.55 5.26 0.09 -8.47 16 20 C -0.07 -0.80 6.99 -83.02 -0.58 -1.38 16 21 C 0.01 0.10 11.94 29.96 0.36 0.46 16 22 O -0.19 -1.67 10.43 6.53 0.07 -1.60 16 23 C 0.21 1.79 7.32 -13.08 -0.10 1.70 16 24 C -0.02 -0.11 4.29 -90.96 -0.39 -0.50 16 25 C -0.13 -0.51 7.64 -25.83 -0.20 -0.71 16 26 C -0.14 -0.41 8.09 -25.83 -0.21 -0.62 16 27 C -0.13 -0.55 7.63 -25.92 -0.20 -0.75 16 28 N -0.46 -4.90 11.06 -7.66 -0.08 -4.98 16 29 C -0.12 -1.36 5.39 -26.73 -0.14 -1.50 16 30 C -0.11 -1.37 5.20 -26.73 -0.14 -1.51 16 31 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.38 10.39 6.85 -40.82 -0.28 10.11 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 1.50 7.18 -51.93 -0.37 1.12 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.41 4.22 8.33 -40.82 -0.34 3.88 16 40 H 0.23 1.46 8.06 -52.48 -0.42 1.04 16 41 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 0.39 7.85 -51.93 -0.41 -0.02 16 43 H 0.08 0.25 8.14 -51.92 -0.42 -0.17 16 44 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 46 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.09 0.42 8.09 -51.93 -0.42 0.00 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 50 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 413.25 15.07 6.23 6.23 Total: -1.00 -34.14 413.25 -9.74 -43.88 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -8.52 Total: 8.29 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -2.61 Total: -5.20 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: 0.04 Total: -61.01 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.16 Total: -10.06 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.14 -9.74 -43.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672987681.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.442 kcal (2) G-P(sol) polarization free energy of solvation -34.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds