Wall clock time and date at job start Wed Apr 1 2020 05:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99788 * 2 1 4 4 H 1.48500 * 109.46939 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47053 * 300.00097 * 3 2 1 6 6 H 1.48496 * 109.46981 * 60.00212 * 3 2 1 7 7 C 1.38810 * 120.00363 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00551 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99689 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00090 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47269 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.47194 * 304.99635 * 11 10 9 13 13 C 1.52999 * 109.46991 * 65.00478 * 11 10 9 14 14 C 1.52997 * 109.46991 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47131 * 299.99311 * 14 13 11 16 16 H 1.08996 * 109.47452 * 300.00000 * 15 14 13 17 17 N 1.46507 * 109.47258 * 179.97438 * 15 14 13 18 18 C 1.34778 * 119.99609 * 85.00044 * 17 15 14 19 19 O 1.21616 * 120.00298 * 0.02562 * 18 17 15 20 20 C 1.47419 * 119.99739 * 180.02562 * 18 17 15 21 21 C 1.36089 * 126.45024 * 180.02562 * 20 18 17 22 22 O 1.34256 * 106.95284 * 179.97438 * 21 20 18 23 23 C 1.34042 * 108.22432 * 0.02562 * 22 21 20 24 24 C 1.50701 * 125.37767 * 180.02562 * 23 22 21 25 25 C 1.53778 * 113.61651 * 39.10142 * 24 23 22 26 26 C 1.53954 * 87.02205 * 220.05259 * 25 24 23 27 27 C 1.53777 * 87.10996 * 25.36587 * 26 25 24 28 28 N 1.29937 * 109.24757 * 359.71859 * 23 22 21 29 29 C 1.53002 * 109.46972 * 60.00459 * 15 14 13 30 30 C 1.52997 * 109.46817 * 299.99733 * 29 15 14 31 31 H 0.97002 * 120.00534 * 0.02562 * 1 2 3 32 32 H 0.97002 * 120.00403 * 0.02562 * 9 7 2 33 33 H 1.09002 * 109.46913 * 59.99757 * 10 9 7 34 34 H 1.09001 * 109.46815 * 300.00334 * 10 9 7 35 35 H 1.09002 * 109.46719 * 299.99711 * 13 11 10 36 36 H 1.08993 * 109.47839 * 59.99553 * 13 11 10 37 37 H 1.09001 * 109.47289 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.47611 * 59.99933 * 14 13 11 39 39 H 0.97001 * 120.00071 * 265.00501 * 17 15 14 40 40 H 1.08004 * 126.52289 * 359.97438 * 21 20 18 41 41 H 1.09000 * 112.85262 * 170.30911 * 24 23 22 42 42 H 1.08998 * 113.61567 * 334.57582 * 25 24 23 43 43 H 1.09007 * 113.61344 * 105.47479 * 25 24 23 44 44 H 1.09006 * 113.53785 * 270.81260 * 26 25 24 45 45 H 1.08999 * 113.73888 * 139.94652 * 26 25 24 46 46 H 1.08999 * 113.61310 * 220.09067 * 27 26 25 47 47 H 1.08998 * 113.69516 * 89.19810 * 27 26 25 48 48 H 1.09002 * 109.47070 * 179.97438 * 29 15 14 49 49 H 1.08996 * 109.47407 * 59.99513 * 29 15 14 50 50 H 1.09001 * 109.47502 * 300.00518 * 30 29 15 51 51 H 1.09001 * 109.47289 * 180.02562 * 30 29 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.3802 -4.7127 0.8421 13 6 0.2687 -4.8115 -1.3070 14 6 -0.7259 -5.9741 -1.3061 15 6 0.0345 -7.2957 -1.1801 16 1 0.7182 -7.4032 -2.0221 17 7 -0.9180 -8.4089 -1.1786 18 6 -1.3570 -8.9217 -2.3452 19 8 -0.9621 -8.4606 -3.3990 20 6 -2.3158 -10.0414 -2.3437 21 6 -2.8420 -10.6568 -3.4375 22 8 -3.6646 -11.6180 -2.9882 23 6 -3.6450 -11.5938 -1.6481 24 6 -4.4304 -12.5118 -0.7473 25 6 -4.5001 -13.9617 -1.2551 26 6 -5.9682 -13.9686 -0.7918 27 6 -5.9504 -12.4413 -0.9702 28 7 -2.8370 -10.6580 -1.2484 29 6 0.8297 -7.3040 0.1270 30 6 1.8243 -6.1414 0.1261 31 1 -0.4851 0.8400 -0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 2.6848 -3.7144 0.8894 34 1 2.6848 -3.7144 -0.8905 35 1 -0.2734 -3.8701 -1.3965 36 1 0.9525 -4.9185 -2.1490 37 1 -1.2928 -5.9680 -2.2371 38 1 -1.4098 -5.8666 -0.4641 39 1 -1.2327 -8.7768 -0.3381 40 1 -2.6369 -10.4174 -4.4706 41 1 -4.1383 -12.4293 0.2996 42 1 -4.3826 -14.0523 -2.3349 43 1 -3.8627 -14.6499 -0.6998 44 1 -6.0966 -14.2858 0.2432 45 1 -6.6426 -14.4805 -1.4782 46 1 -6.4822 -11.9037 -0.1852 47 1 -6.2301 -12.1139 -1.9715 48 1 1.3711 -8.2457 0.2170 49 1 0.1460 -7.1964 0.9690 50 1 2.5081 -6.2488 -0.7160 51 1 2.3912 -6.1475 1.0571 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672987681.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:59 Heat of formation + Delta-G solvation = -29.943527 kcal Electronic energy + Delta-G solvation = -29623.224454 eV Core-core repulsion = 25523.079225 eV Total energy + Delta-G solvation = -4100.145229 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.55778 -41.09651 -39.59395 -39.37293 -36.75200 -36.02098 -35.11484 -33.10911 -31.86651 -31.71741 -30.52057 -27.26052 -26.91515 -26.58872 -25.39096 -24.30995 -23.57467 -22.73430 -22.02255 -21.66314 -20.96340 -20.23211 -19.21609 -19.03133 -17.90148 -17.72621 -17.39885 -16.68685 -16.63187 -16.30167 -16.12469 -15.78496 -15.53110 -15.28839 -15.15695 -14.87617 -14.73835 -14.57775 -13.79562 -13.75908 -13.53995 -13.52757 -13.34243 -13.25697 -13.11705 -12.88770 -12.80589 -12.42541 -12.14644 -12.08668 -12.06452 -11.96033 -11.93533 -11.90843 -11.58699 -11.42508 -11.40709 -11.35329 -11.20128 -11.07989 -10.90062 -10.24018 -9.97319 -8.97689 -7.94901 -5.23099 -0.00406 0.85541 1.46372 1.47577 1.48240 1.57756 1.97995 2.14885 2.56142 2.74514 3.38573 3.54138 3.56150 3.63963 3.70230 3.73190 3.78199 3.91836 3.92587 4.03132 4.07582 4.14171 4.40355 4.42154 4.42946 4.52081 4.53846 4.55250 4.57207 4.72435 4.78870 4.80381 4.86570 4.92635 4.95930 5.05200 5.05434 5.07612 5.10327 5.11536 5.14391 5.19231 5.22261 5.29999 5.41502 5.46979 5.50612 5.53101 5.60736 6.24436 6.27896 6.53865 7.03359 7.33824 8.11761 8.34705 9.29049 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023469 B = 0.001607 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.751836 B =17420.361326 C =17599.837087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.244 4.244 8 H 0.075 0.925 9 N -0.745 5.745 10 C 0.154 3.846 11 C -0.084 4.084 12 H 0.065 0.935 13 C -0.100 4.100 14 C -0.117 4.117 15 C 0.151 3.849 16 H 0.077 0.923 17 N -0.697 5.697 18 C 0.599 3.401 19 O -0.570 6.570 20 C -0.100 4.100 21 C 0.024 3.976 22 O -0.192 6.192 23 C 0.213 3.787 24 C -0.028 4.028 25 C -0.130 4.130 26 C -0.129 4.129 27 C -0.132 4.132 28 N -0.479 5.479 29 C -0.112 4.112 30 C -0.100 4.100 31 H 0.250 0.750 32 H 0.374 0.626 33 H 0.023 0.977 34 H 0.016 0.984 35 H 0.042 0.958 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.067 0.933 39 H 0.416 0.584 40 H 0.254 0.746 41 H 0.143 0.857 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.089 0.911 49 H 0.079 0.921 50 H 0.068 0.932 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.665 -35.342 -1.185 36.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.803 3.197 4 H -0.190 1.190 5 H -0.221 1.221 6 H -0.219 1.219 7 C -0.376 4.376 8 H 0.093 0.907 9 N -0.388 5.388 10 C 0.027 3.973 11 C -0.103 4.103 12 H 0.083 0.917 13 C -0.138 4.138 14 C -0.156 4.156 15 C 0.047 3.953 16 H 0.095 0.905 17 N -0.347 5.347 18 C 0.385 3.615 19 O -0.449 6.449 20 C -0.218 4.218 21 C -0.050 4.050 22 O -0.077 6.077 23 C 0.004 3.996 24 C -0.047 4.047 25 C -0.168 4.168 26 C -0.167 4.167 27 C -0.170 4.170 28 N -0.209 5.209 29 C -0.150 4.150 30 C -0.138 4.138 31 H 0.059 0.941 32 H 0.206 0.794 33 H 0.041 0.959 34 H 0.034 0.966 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.253 0.747 40 H 0.270 0.730 41 H 0.161 0.839 42 H 0.102 0.898 43 H 0.108 0.892 44 H 0.119 0.881 45 H 0.101 0.899 46 H 0.104 0.896 47 H 0.098 0.902 48 H 0.107 0.893 49 H 0.098 0.902 50 H 0.087 0.913 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.057 -34.781 -1.274 36.228 hybrid contribution -0.205 1.427 -0.650 1.582 sum -10.262 -33.353 -1.924 34.949 Atomic orbital electron populations 1.69829 1.06644 1.25932 1.59770 1.25579 0.96420 1.01144 1.03860 0.85056 0.78240 0.79726 0.76651 1.18993 1.22144 1.21901 1.19713 0.91539 0.85530 1.40849 0.90698 1.42620 1.05642 1.01237 1.89253 1.20883 0.93973 0.84944 0.97467 1.21248 0.96905 0.94704 0.97442 0.91662 1.21360 0.97637 0.97150 0.97654 1.21805 0.98108 0.94209 1.01452 1.21024 0.89911 0.84279 1.00099 0.90502 1.45836 1.45471 1.34799 1.08564 1.17001 0.79531 0.80770 0.84164 1.90823 1.59449 1.62462 1.32200 1.21730 1.06284 1.03175 0.90659 1.25769 0.90311 0.87279 1.01645 1.84381 1.52581 1.46479 1.24298 1.26804 0.96812 0.96648 0.79363 1.21684 0.93984 0.92091 0.96909 1.23064 0.98601 0.93111 1.02010 1.22839 0.95814 0.94740 1.03274 1.23044 0.92170 0.98647 1.03146 1.70730 1.11308 1.08627 1.30198 1.21721 0.98150 0.99558 0.95574 1.21419 0.97416 0.91706 1.03277 0.94073 0.79428 0.95930 0.96563 0.93912 0.92567 0.93429 0.91456 0.74728 0.73040 0.83903 0.89812 0.89210 0.88090 0.89946 0.89583 0.90151 0.89283 0.90219 0.91338 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.13 13.06 21.65 0.28 -60.85 16 2 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 3 Si 0.97 47.40 29.55 68.60 2.03 49.42 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 7 C -0.24 -14.13 9.99 84.03 0.84 -13.29 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.74 -39.27 5.33 -343.45 -1.83 -41.10 16 10 C 0.15 6.31 5.65 86.38 0.49 6.80 16 11 C -0.08 -2.72 2.22 -10.79 -0.02 -2.74 16 12 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 13 C -0.10 -3.38 5.08 30.59 0.16 -3.23 16 14 C -0.12 -3.41 5.49 30.59 0.17 -3.24 16 15 C 0.15 3.69 2.45 44.99 0.11 3.80 16 16 H 0.08 2.12 7.58 -2.39 -0.02 2.11 16 17 N -0.70 -15.98 5.07 -445.79 -2.26 -18.24 16 18 C 0.60 15.83 7.78 86.66 0.67 16.50 16 19 O -0.57 -18.49 16.55 -4.08 -0.07 -18.56 16 20 C -0.10 -2.23 6.99 40.41 0.28 -1.94 16 21 C 0.02 0.42 11.94 67.32 0.80 1.23 16 22 O -0.19 -3.08 10.43 0.46 0.00 -3.08 16 23 C 0.21 3.43 7.32 88.39 0.65 4.08 16 24 C -0.03 -0.25 4.29 -11.01 -0.05 -0.30 16 25 C -0.13 -0.75 7.64 31.18 0.24 -0.51 16 26 C -0.13 -0.47 8.09 31.18 0.25 -0.22 16 27 C -0.13 -0.90 7.63 31.12 0.24 -0.66 16 28 N -0.48 -9.83 11.06 -293.04 -3.24 -13.07 16 29 C -0.11 -2.21 5.39 30.59 0.16 -2.05 16 30 C -0.10 -2.36 5.20 30.60 0.16 -2.20 16 31 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 32 H 0.37 20.93 6.85 -92.71 -0.63 20.30 16 33 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.04 1.73 7.18 -2.39 -0.02 1.72 16 36 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.42 8.06 8.33 -92.71 -0.77 7.29 16 40 H 0.25 2.95 8.06 -2.91 -0.02 2.92 16 41 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.08 0.60 7.85 -2.39 -0.02 0.58 16 43 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 44 H 0.10 0.14 8.14 -2.38 -0.02 0.12 16 45 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 46 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.08 0.68 8.09 -2.39 -0.02 0.66 16 48 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 51 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -74.55 413.25 0.06 -74.49 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: -0.47 Total: 33.12 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: 5.62 Total: -2.14 kcal Atomic # 7 Polarization: -126.21 SS G_CDS: -7.05 Total: -133.26 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.06 Total: -21.63 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.42 kcal Total: -74.55 0.06 -74.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672987681.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.544 kcal (2) G-P(sol) polarization free energy of solvation -74.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds