Wall clock time and date at job start Wed Apr 1 2020 04:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00071 * 2 1 4 4 H 1.48500 * 109.47071 * 270.00005 * 3 2 1 5 5 H 1.48493 * 109.47086 * 29.99772 * 3 2 1 6 6 H 1.48499 * 109.47003 * 150.00032 * 3 2 1 7 7 C 1.38818 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00294 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99648 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99930 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47345 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47070 * 305.00306 * 11 10 9 13 13 C 1.52997 * 109.46817 * 65.00126 * 11 10 9 14 14 C 1.52999 * 109.47317 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47159 * 300.00546 * 14 13 11 16 16 C 1.52997 * 109.47452 * 59.99536 * 15 14 13 17 17 C 1.53000 * 109.47233 * 184.99932 * 11 10 9 18 18 H 1.09004 * 109.46724 * 60.00652 * 17 11 10 19 19 N 1.46496 * 109.47631 * 300.00276 * 17 11 10 20 20 C 1.34776 * 120.00390 * 154.99604 * 19 17 11 21 21 O 1.21280 * 119.99634 * 0.02562 * 20 19 17 22 22 C 1.50696 * 120.00133 * 179.97438 * 20 19 17 23 23 C 1.52999 * 109.47307 * 180.02562 * 22 20 19 24 24 N 1.46496 * 109.47564 * 180.02562 * 23 22 20 25 25 C 1.35758 * 119.62719 * 269.73136 * 24 23 22 26 26 C 1.35347 * 120.70558 * 179.75925 * 25 24 23 27 27 C 1.40201 * 119.94453 * 0.50977 * 26 25 24 28 28 C 1.36395 * 119.26439 * 359.74700 * 27 26 25 29 29 C 1.34664 * 119.62283 * 90.00026 * 24 23 22 30 30 O 1.22054 * 119.98699 * 0.02562 * 29 24 23 31 31 H 0.96996 * 119.99974 * 0.02562 * 1 2 3 32 32 H 0.97008 * 120.00268 * 0.02562 * 9 7 2 33 33 H 1.09008 * 109.47020 * 60.00233 * 10 9 7 34 34 H 1.08997 * 109.47417 * 300.00227 * 10 9 7 35 35 H 1.08996 * 109.47853 * 300.00202 * 13 11 10 36 36 H 1.09002 * 109.47153 * 60.00231 * 13 11 10 37 37 H 1.09000 * 109.47486 * 180.02562 * 14 13 11 38 38 H 1.09002 * 109.46716 * 60.00091 * 14 13 11 39 39 H 1.09002 * 109.46935 * 299.99411 * 15 14 13 40 40 H 1.09001 * 109.46812 * 179.97438 * 15 14 13 41 41 H 1.08993 * 109.47194 * 179.97438 * 16 15 14 42 42 H 1.09002 * 109.46695 * 59.99734 * 16 15 14 43 43 H 0.97001 * 119.99395 * 335.00526 * 19 17 11 44 44 H 1.09002 * 109.47473 * 300.00510 * 22 20 19 45 45 H 1.09003 * 109.46638 * 60.00303 * 22 20 19 46 46 H 1.09002 * 109.47140 * 300.00554 * 23 22 20 47 47 H 1.09006 * 109.46903 * 60.00008 * 23 22 20 48 48 H 1.08003 * 119.64599 * 359.97438 * 25 24 23 49 49 H 1.07995 * 120.02854 * 180.27483 * 26 25 24 50 50 H 1.07996 * 120.36642 * 179.77348 * 27 26 25 51 51 H 1.08003 * 120.34381 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0638 -4.8197 0.0022 12 1 0.3800 -4.7126 0.8443 13 6 0.2686 -4.8115 -1.3048 14 6 -0.7252 -5.9748 -1.3046 15 6 0.0362 -7.2960 -1.1790 16 6 0.8314 -7.3042 0.1280 17 6 1.8247 -6.1412 0.1279 18 1 2.3912 -6.1470 1.0592 19 7 2.7438 -6.2851 -1.0037 20 6 3.8432 -7.0556 -0.8852 21 8 4.0714 -7.6302 0.1582 22 6 4.7883 -7.2041 -2.0495 23 6 5.9443 -8.1250 -1.6538 24 7 6.8634 -8.2690 -2.7855 25 6 6.6739 -9.2718 -3.6807 26 6 7.5069 -9.4221 -4.7368 27 6 8.5852 -8.5426 -4.9083 28 6 8.7770 -7.5387 -4.0050 29 6 7.8899 -7.4082 -2.9229 30 8 8.0504 -6.5149 -2.1068 31 1 -0.4850 0.8400 -0.0004 32 1 0.3555 -2.3881 0.0016 33 1 2.6854 -3.7141 0.8912 34 1 2.6840 -3.7150 -0.8888 35 1 -0.2735 -3.8701 -1.3945 36 1 0.9524 -4.9186 -2.1468 37 1 -1.2914 -5.9692 -2.2359 38 1 -1.4091 -5.8681 -0.4625 39 1 0.7200 -7.4026 -2.0211 40 1 -0.6719 -8.1247 -1.1784 41 1 1.3733 -8.2456 0.2177 42 1 0.1474 -7.1975 0.9700 43 1 2.5611 -5.8258 -1.8383 44 1 4.2555 -7.6343 -2.8975 45 1 5.1811 -6.2255 -2.3257 46 1 6.4773 -7.6953 -0.8057 47 1 5.5512 -9.1036 -1.3779 48 1 5.8476 -9.9550 -3.5506 49 1 7.3434 -10.2211 -5.4447 50 1 9.2563 -8.6584 -5.7465 51 1 9.6018 -6.8511 -4.1205 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699503782.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:12 Heat of formation + Delta-G solvation = -43.868971 kcal Electronic energy + Delta-G solvation = -30741.580546 eV Core-core repulsion = 26640.831465 eV Total energy + Delta-G solvation = -4100.749081 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.65272 -40.32763 -38.31837 -37.14947 -35.35574 -34.65583 -33.68100 -31.94583 -31.57314 -30.16878 -29.79459 -29.32292 -25.76689 -25.08199 -24.02299 -23.03784 -22.67600 -22.11123 -20.98372 -20.43176 -18.98758 -18.12496 -17.62972 -17.35736 -16.91414 -16.44351 -16.09745 -15.80932 -15.42400 -15.11881 -14.89581 -14.59553 -14.44593 -14.30478 -13.92394 -13.70973 -13.38905 -13.21367 -13.05672 -12.92156 -12.74852 -12.65288 -12.31325 -12.11173 -12.09025 -11.96106 -11.70052 -11.51212 -11.41746 -10.90353 -10.87842 -10.73888 -10.52917 -10.38400 -10.20610 -10.17974 -9.99206 -9.88236 -9.86192 -9.61993 -8.95643 -8.83716 -8.29787 -6.90953 -5.76068 -3.04234 0.49530 1.56301 2.25672 2.58398 3.19325 3.39564 3.44954 3.50563 3.52465 4.18676 4.30587 4.44037 4.55453 4.57703 4.68563 4.76519 4.84018 4.86248 4.89773 4.90552 4.96717 5.09472 5.22994 5.30760 5.42478 5.53960 5.56142 5.58367 5.61847 5.64439 5.65873 5.72091 5.75522 5.80004 5.93559 6.01811 6.10999 6.13970 6.18298 6.22316 6.24552 6.35628 6.45905 6.55732 6.66774 6.77748 6.80954 6.86946 7.50146 7.72280 7.78251 8.18506 8.43212 9.54620 10.11875 10.46731 11.46813 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009160 B = 0.002656 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3056.021349 B =10541.250222 C =12780.933729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.160 3.840 11 C -0.102 4.102 12 H 0.085 0.915 13 C -0.110 4.110 14 C -0.121 4.121 15 C -0.115 4.115 16 C -0.127 4.127 17 C 0.154 3.846 18 H 0.088 0.912 19 N -0.712 5.712 20 C 0.521 3.479 21 O -0.545 6.545 22 C -0.158 4.158 23 C 0.107 3.893 24 N -0.496 5.496 25 C 0.135 3.865 26 C -0.237 4.237 27 C -0.019 4.019 28 C -0.243 4.243 29 C 0.509 3.491 30 O -0.544 6.544 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.018 0.982 34 H 0.017 0.983 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.402 0.598 44 H 0.096 0.904 45 H 0.104 0.896 46 H 0.110 0.890 47 H 0.100 0.900 48 H 0.161 0.839 49 H 0.144 0.856 50 H 0.133 0.867 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.886 -25.322 -11.372 28.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.032 3.968 11 C -0.121 4.121 12 H 0.104 0.896 13 C -0.148 4.148 14 C -0.159 4.159 15 C -0.152 4.152 16 C -0.166 4.166 17 C 0.050 3.950 18 H 0.106 0.894 19 N -0.364 5.364 20 C 0.307 3.693 21 O -0.423 6.423 22 C -0.199 4.199 23 C -0.015 4.015 24 N -0.207 5.207 25 C 0.007 3.993 26 C -0.260 4.260 27 C -0.041 4.041 28 C -0.265 4.265 29 C 0.311 3.689 30 O -0.425 6.425 31 H 0.064 0.936 32 H 0.218 0.782 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.238 0.762 44 H 0.115 0.885 45 H 0.122 0.878 46 H 0.129 0.871 47 H 0.118 0.882 48 H 0.179 0.821 49 H 0.162 0.838 50 H 0.151 0.849 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.260 -24.998 -10.027 28.172 hybrid contribution 0.034 1.181 -0.617 1.333 sum 8.294 -23.817 -10.645 27.374 Atomic orbital electron populations 1.69653 1.05074 1.25612 1.57989 1.24720 0.95521 0.97648 1.03085 0.86198 0.78730 0.83849 0.77514 1.21748 1.21779 1.20740 1.19233 0.91039 0.84197 1.42427 0.91285 1.42361 1.05793 0.99902 1.89452 1.20642 0.92964 0.85334 0.97854 1.21630 0.97828 0.93414 0.99223 0.89624 1.21529 0.97644 0.99005 0.96602 1.21590 0.98076 0.94505 1.01688 1.21488 0.98576 0.97533 0.97638 1.21888 0.97919 0.98481 0.98314 1.20971 0.89733 0.94551 0.89780 0.89371 1.46106 1.23866 1.49180 1.17207 1.20171 0.81370 0.78910 0.88894 1.90708 1.74539 1.47272 1.29796 1.21955 0.96280 1.03304 0.98327 1.21714 0.89638 1.01751 0.88358 1.45641 1.25782 1.25600 1.23673 1.22007 0.98590 0.89840 0.88846 1.20656 0.99178 1.05077 1.01087 1.21444 0.94694 0.91299 0.96617 1.22174 1.03478 1.03547 0.97267 1.17242 0.81350 0.82411 0.87937 1.91019 1.73547 1.33178 1.44758 0.93561 0.78230 0.96423 0.96477 0.90242 0.92761 0.92278 0.91873 0.92404 0.92510 0.91795 0.91003 0.76241 0.88547 0.87791 0.87127 0.88193 0.82129 0.83827 0.84879 0.83479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.28 5.33 -59.91 -0.32 -18.60 16 10 C 0.16 3.18 5.42 -4.04 -0.02 3.16 16 11 C -0.10 -1.55 2.02 -90.62 -0.18 -1.73 16 12 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 13 C -0.11 -1.54 4.90 -26.73 -0.13 -1.67 16 14 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 15 C -0.11 -1.16 5.77 -26.73 -0.15 -1.31 16 16 C -0.13 -1.44 5.60 -26.76 -0.15 -1.59 16 17 C 0.15 2.04 2.23 -67.96 -0.15 1.89 16 18 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 19 N -0.71 -8.46 3.61 -53.83 -0.19 -8.65 16 20 C 0.52 6.38 7.79 -10.99 -0.09 6.29 16 21 O -0.55 -8.38 15.65 5.56 0.09 -8.29 16 22 C -0.16 -1.47 6.02 -27.89 -0.17 -1.64 16 23 C 0.11 1.01 4.62 -4.04 -0.02 0.99 16 24 N -0.50 -4.45 2.58 -119.77 -0.31 -4.76 16 25 C 0.13 0.73 10.28 -16.85 -0.17 0.56 16 26 C -0.24 -1.15 10.01 -39.88 -0.40 -1.55 16 27 C -0.02 -0.11 10.10 -39.51 -0.40 -0.51 16 28 C -0.24 -2.25 9.99 -39.38 -0.39 -2.64 16 29 C 0.51 6.17 7.41 -15.44 -0.11 6.05 16 30 O -0.54 -9.06 16.64 4.87 0.08 -8.98 16 31 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.38 9.97 6.85 -40.82 -0.28 9.69 16 33 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 34 H 0.02 0.35 7.61 -51.93 -0.40 -0.05 16 35 H 0.08 1.34 7.18 -51.93 -0.37 0.97 16 36 H 0.05 0.71 6.51 -51.93 -0.34 0.37 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.56 7.60 -51.93 -0.39 0.16 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.40 4.34 6.67 -40.82 -0.27 4.07 16 44 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 46 H 0.11 1.38 7.34 -51.93 -0.38 1.00 16 47 H 0.10 0.74 7.97 -51.93 -0.41 0.33 16 48 H 0.16 0.34 8.03 -52.48 -0.42 -0.09 16 49 H 0.14 0.32 8.06 -52.49 -0.42 -0.11 16 50 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 51 H 0.15 1.27 8.06 -52.48 -0.42 0.84 16 LS Contribution 408.24 15.07 6.15 6.15 Total: -1.00 -35.92 408.24 -10.03 -45.96 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -8.28 Total: 9.53 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -2.95 Total: -2.60 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.10 Total: -59.52 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: 0.17 Total: -17.27 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.92 -10.03 -45.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699503782.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.087 kcal (2) G-P(sol) polarization free energy of solvation -35.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds