Wall clock time and date at job start Wed Apr 1 2020 04:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00071 * 2 1 4 4 H 1.48500 * 109.47071 * 270.00005 * 3 2 1 5 5 H 1.48493 * 109.47086 * 29.99772 * 3 2 1 6 6 H 1.48499 * 109.47003 * 150.00032 * 3 2 1 7 7 C 1.38818 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00294 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99648 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99930 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47345 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47070 * 305.00306 * 11 10 9 13 13 C 1.52997 * 109.46817 * 65.00126 * 11 10 9 14 14 C 1.52999 * 109.47317 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47159 * 300.00546 * 14 13 11 16 16 C 1.52997 * 109.47452 * 59.99536 * 15 14 13 17 17 C 1.53000 * 109.47233 * 184.99932 * 11 10 9 18 18 H 1.09004 * 109.46724 * 60.00652 * 17 11 10 19 19 N 1.46496 * 109.47631 * 300.00276 * 17 11 10 20 20 C 1.34776 * 120.00390 * 154.99604 * 19 17 11 21 21 O 1.21280 * 119.99634 * 0.02562 * 20 19 17 22 22 C 1.50696 * 120.00133 * 179.97438 * 20 19 17 23 23 C 1.52999 * 109.47307 * 180.02562 * 22 20 19 24 24 N 1.46496 * 109.47564 * 180.02562 * 23 22 20 25 25 C 1.35758 * 119.62719 * 269.73136 * 24 23 22 26 26 C 1.35347 * 120.70558 * 179.75925 * 25 24 23 27 27 C 1.40201 * 119.94453 * 0.50977 * 26 25 24 28 28 C 1.36395 * 119.26439 * 359.74700 * 27 26 25 29 29 C 1.34664 * 119.62283 * 90.00026 * 24 23 22 30 30 O 1.22054 * 119.98699 * 0.02562 * 29 24 23 31 31 H 0.96996 * 119.99974 * 0.02562 * 1 2 3 32 32 H 0.97008 * 120.00268 * 0.02562 * 9 7 2 33 33 H 1.09008 * 109.47020 * 60.00233 * 10 9 7 34 34 H 1.08997 * 109.47417 * 300.00227 * 10 9 7 35 35 H 1.08996 * 109.47853 * 300.00202 * 13 11 10 36 36 H 1.09002 * 109.47153 * 60.00231 * 13 11 10 37 37 H 1.09000 * 109.47486 * 180.02562 * 14 13 11 38 38 H 1.09002 * 109.46716 * 60.00091 * 14 13 11 39 39 H 1.09002 * 109.46935 * 299.99411 * 15 14 13 40 40 H 1.09001 * 109.46812 * 179.97438 * 15 14 13 41 41 H 1.08993 * 109.47194 * 179.97438 * 16 15 14 42 42 H 1.09002 * 109.46695 * 59.99734 * 16 15 14 43 43 H 0.97001 * 119.99395 * 335.00526 * 19 17 11 44 44 H 1.09002 * 109.47473 * 300.00510 * 22 20 19 45 45 H 1.09003 * 109.46638 * 60.00303 * 22 20 19 46 46 H 1.09002 * 109.47140 * 300.00554 * 23 22 20 47 47 H 1.09006 * 109.46903 * 60.00008 * 23 22 20 48 48 H 1.08003 * 119.64599 * 359.97438 * 25 24 23 49 49 H 1.07995 * 120.02854 * 180.27483 * 26 25 24 50 50 H 1.07996 * 120.36642 * 179.77348 * 27 26 25 51 51 H 1.08003 * 120.34381 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0638 -4.8197 0.0022 12 1 0.3800 -4.7126 0.8443 13 6 0.2686 -4.8115 -1.3048 14 6 -0.7252 -5.9748 -1.3046 15 6 0.0362 -7.2960 -1.1790 16 6 0.8314 -7.3042 0.1280 17 6 1.8247 -6.1412 0.1279 18 1 2.3912 -6.1470 1.0592 19 7 2.7438 -6.2851 -1.0037 20 6 3.8432 -7.0556 -0.8852 21 8 4.0714 -7.6302 0.1582 22 6 4.7883 -7.2041 -2.0495 23 6 5.9443 -8.1250 -1.6538 24 7 6.8634 -8.2690 -2.7855 25 6 6.6739 -9.2718 -3.6807 26 6 7.5069 -9.4221 -4.7368 27 6 8.5852 -8.5426 -4.9083 28 6 8.7770 -7.5387 -4.0050 29 6 7.8899 -7.4082 -2.9229 30 8 8.0504 -6.5149 -2.1068 31 1 -0.4850 0.8400 -0.0004 32 1 0.3555 -2.3881 0.0016 33 1 2.6854 -3.7141 0.8912 34 1 2.6840 -3.7150 -0.8888 35 1 -0.2735 -3.8701 -1.3945 36 1 0.9524 -4.9186 -2.1468 37 1 -1.2914 -5.9692 -2.2359 38 1 -1.4091 -5.8681 -0.4625 39 1 0.7200 -7.4026 -2.0211 40 1 -0.6719 -8.1247 -1.1784 41 1 1.3733 -8.2456 0.2177 42 1 0.1474 -7.1975 0.9700 43 1 2.5611 -5.8258 -1.8383 44 1 4.2555 -7.6343 -2.8975 45 1 5.1811 -6.2255 -2.3257 46 1 6.4773 -7.6953 -0.8057 47 1 5.5512 -9.1036 -1.3779 48 1 5.8476 -9.9550 -3.5506 49 1 7.3434 -10.2211 -5.4447 50 1 9.2563 -8.6584 -5.7465 51 1 9.6018 -6.8511 -4.1205 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699503782.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:11 Heat of formation + Delta-G solvation = -67.357335 kcal Electronic energy + Delta-G solvation = -30742.599078 eV Core-core repulsion = 26640.831465 eV Total energy + Delta-G solvation = -4101.767613 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.36434 -41.38967 -39.42776 -37.97217 -36.50479 -36.00661 -34.70826 -33.74243 -32.38629 -31.25633 -30.82313 -30.47487 -27.08757 -26.24670 -24.71217 -24.63368 -23.59257 -23.05506 -22.10853 -21.64222 -20.04112 -19.31575 -18.83399 -18.27845 -17.89312 -17.14072 -17.04421 -16.86235 -16.56653 -16.37861 -16.14653 -15.60037 -15.44241 -15.20678 -15.07659 -15.04510 -14.79207 -14.71093 -14.22832 -14.01630 -13.78650 -13.42902 -13.23773 -13.11412 -12.98831 -12.89893 -12.81773 -12.73807 -12.67430 -12.60837 -12.27168 -12.14790 -11.94181 -11.87705 -11.41387 -11.23015 -11.18151 -11.05267 -11.01161 -10.87242 -10.85294 -10.00300 -9.02634 -8.95375 -7.99137 -5.27361 -0.04984 0.94992 1.43896 1.44918 1.53807 1.53841 1.60609 2.27368 2.52174 2.71868 3.33878 3.54109 3.61471 3.67851 3.78487 3.78901 3.84471 3.95376 4.02010 4.08442 4.20369 4.24369 4.31393 4.37925 4.41259 4.47331 4.48883 4.51463 4.58718 4.67120 4.71774 4.74013 4.78784 4.91470 4.99789 5.09518 5.10936 5.18701 5.22922 5.28296 5.29843 5.36268 5.43567 5.44345 5.47267 5.52884 5.61368 5.70361 6.12663 6.23711 6.51459 7.00863 7.20207 7.30595 8.05398 8.30638 9.23966 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009160 B = 0.002656 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3056.021349 B =10541.250222 C =12780.933729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.070 4.070 3 Si 0.970 3.030 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.248 4.248 8 H 0.066 0.934 9 N -0.739 5.739 10 C 0.161 3.839 11 C -0.088 4.088 12 H 0.076 0.924 13 C -0.104 4.104 14 C -0.115 4.115 15 C -0.106 4.106 16 C -0.120 4.120 17 C 0.161 3.839 18 H 0.063 0.937 19 N -0.707 5.707 20 C 0.521 3.479 21 O -0.578 6.578 22 C -0.146 4.146 23 C 0.110 3.890 24 N -0.492 5.492 25 C 0.132 3.868 26 C -0.229 4.229 27 C 0.008 3.992 28 C -0.286 4.286 29 C 0.489 3.511 30 O -0.616 6.616 31 H 0.253 0.747 32 H 0.377 0.623 33 H -0.001 1.001 34 H 0.021 0.979 35 H 0.046 0.954 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.409 0.591 44 H 0.139 0.861 45 H 0.086 0.914 46 H 0.069 0.931 47 H 0.128 0.872 48 H 0.206 0.794 49 H 0.185 0.815 50 H 0.166 0.834 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.356 -28.566 -14.223 32.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.799 3.201 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.382 5.382 10 C 0.034 3.966 11 C -0.108 4.108 12 H 0.094 0.906 13 C -0.142 4.142 14 C -0.152 4.152 15 C -0.144 4.144 16 C -0.158 4.158 17 C 0.056 3.944 18 H 0.081 0.919 19 N -0.359 5.359 20 C 0.308 3.692 21 O -0.459 6.459 22 C -0.186 4.186 23 C -0.012 4.012 24 N -0.201 5.201 25 C 0.006 3.994 26 C -0.251 4.251 27 C -0.014 4.014 28 C -0.308 4.308 29 C 0.294 3.706 30 O -0.504 6.504 31 H 0.062 0.938 32 H 0.210 0.790 33 H 0.017 0.983 34 H 0.039 0.961 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.246 0.754 44 H 0.157 0.843 45 H 0.104 0.896 46 H 0.087 0.913 47 H 0.146 0.854 48 H 0.222 0.778 49 H 0.202 0.798 50 H 0.183 0.817 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.736 -28.300 -12.927 32.060 hybrid contribution 0.229 2.065 0.216 2.089 sum 7.965 -26.235 -12.711 30.221 Atomic orbital electron populations 1.69791 1.06353 1.26141 1.59232 1.25493 0.96418 1.00813 1.03508 0.85197 0.77590 0.79746 0.77579 1.21102 1.21779 1.20125 1.19552 0.91193 0.85652 1.41626 0.91564 1.42502 1.05626 1.00813 1.89273 1.20747 0.93715 0.85286 0.96841 1.21458 0.96802 0.92535 0.99963 0.90571 1.21449 0.98024 0.98863 0.95876 1.21541 0.97395 0.93872 1.02395 1.21448 0.98786 0.97181 0.96962 1.21822 0.97394 0.97095 0.99524 1.20777 0.89995 0.94276 0.89344 0.91865 1.46054 1.23749 1.49114 1.17016 1.20623 0.81293 0.78134 0.89164 1.90696 1.75178 1.48723 1.31266 1.21887 0.95692 1.02758 0.98259 1.21619 0.89198 1.02796 0.87544 1.45581 1.24702 1.25844 1.23999 1.22837 0.99889 0.88882 0.87826 1.21218 0.97677 1.05043 1.01129 1.21891 0.94721 0.89100 0.95653 1.22095 1.04175 1.06106 0.98431 1.17732 0.82417 0.82312 0.88116 1.90963 1.75650 1.36413 1.47391 0.93847 0.79014 0.98289 0.96120 0.93527 0.91619 0.90784 0.92207 0.91254 0.90422 0.91578 0.90752 0.75381 0.84327 0.89572 0.91281 0.85424 0.77761 0.79779 0.81661 0.84373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.36 13.06 21.65 0.28 -59.08 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 3 Si 0.97 47.48 29.55 68.60 2.03 49.50 16 4 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 7 C -0.25 -14.37 9.99 84.03 0.84 -13.53 16 8 H 0.07 3.79 7.83 -2.92 -0.02 3.77 16 9 N -0.74 -38.20 5.33 -343.46 -1.83 -40.03 16 10 C 0.16 6.63 5.42 86.38 0.47 7.10 16 11 C -0.09 -2.73 2.02 -10.79 -0.02 -2.75 16 12 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 13 C -0.10 -2.86 4.90 30.59 0.15 -2.71 16 14 C -0.11 -2.35 5.92 30.60 0.18 -2.17 16 15 C -0.11 -1.79 5.77 30.60 0.18 -1.61 16 16 C -0.12 -2.48 5.60 30.58 0.17 -2.31 16 17 C 0.16 4.23 2.23 44.98 0.10 4.34 16 18 H 0.06 2.00 7.58 -2.39 -0.02 1.98 16 19 N -0.71 -16.25 3.61 -442.62 -1.60 -17.85 16 20 C 0.52 12.47 7.79 87.66 0.68 13.15 16 21 O -0.58 -17.91 15.65 -3.03 -0.05 -17.96 16 22 C -0.15 -2.56 6.02 29.85 0.18 -2.38 16 23 C 0.11 2.05 4.62 86.38 0.40 2.45 16 24 N -0.49 -8.33 2.58 -650.98 -1.68 -10.01 16 25 C 0.13 0.90 10.28 83.42 0.86 1.76 16 26 C -0.23 -1.12 10.01 22.08 0.22 -0.90 16 27 C 0.01 0.08 10.10 22.32 0.23 0.30 16 28 C -0.29 -5.41 9.99 22.40 0.22 -5.19 16 29 C 0.49 12.54 7.41 84.82 0.63 13.17 16 30 O -0.62 -22.87 16.64 -5.49 -0.09 -22.96 16 31 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 32 H 0.38 20.32 6.85 -92.70 -0.63 19.68 16 33 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 34 H 0.02 0.85 7.61 -2.39 -0.02 0.83 16 35 H 0.05 1.60 7.18 -2.39 -0.02 1.58 16 36 H 0.07 1.62 6.51 -2.39 -0.02 1.61 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.04 7.60 -2.39 -0.02 1.03 16 40 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.41 8.25 6.67 -92.71 -0.62 7.63 16 44 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.07 1.89 7.34 -2.39 -0.02 1.87 16 47 H 0.13 1.62 7.97 -2.38 -0.02 1.60 16 48 H 0.21 -0.42 8.03 -2.91 -0.02 -0.45 16 49 H 0.18 -0.47 8.06 -2.91 -0.02 -0.49 16 50 H 0.17 0.43 8.06 -2.91 -0.02 0.41 16 51 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -84.72 408.24 2.69 -82.03 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -0.32 Total: 31.26 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 5.95 Total: 5.10 kcal Atomic # 7 Polarization: -122.14 SS G_CDS: -4.83 Total: -126.97 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -0.14 Total: -40.91 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.50 kcal Total: -84.72 2.69 -82.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699503782.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.669 kcal (2) G-P(sol) polarization free energy of solvation -84.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds