Wall clock time and date at job start Wed Apr 1 2020 04:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 119.99628 * 2 1 4 4 H 1.48507 * 109.47217 * 269.99730 * 3 2 1 5 5 H 1.48502 * 109.47530 * 29.99593 * 3 2 1 6 6 H 1.48497 * 109.47386 * 149.99657 * 3 2 1 7 7 C 1.38808 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99901 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00162 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00092 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47373 * 175.03268 * 10 9 7 12 12 N 1.46500 * 109.54087 * 305.57852 * 11 10 9 13 13 C 1.34775 * 120.00217 * 303.95075 * 12 11 10 14 14 O 1.21627 * 119.99797 * 354.54973 * 13 12 11 15 15 C 1.47265 * 120.00271 * 174.54490 * 13 12 11 16 16 C 1.46742 * 126.92158 * 359.68882 * 15 13 12 17 17 C 1.34070 * 106.31331 * 179.89326 * 16 15 13 18 18 N 1.37080 * 109.03690 * 0.40958 * 17 16 15 19 19 C 1.34580 * 109.95015 * 359.68737 * 18 17 16 20 20 C 1.47033 * 123.95414 * 179.63055 * 18 17 16 21 21 C 1.53147 * 108.82879 * 342.44508 * 20 18 17 22 22 C 1.53132 * 109.58831 * 51.23323 * 21 20 18 23 23 C 1.51089 * 126.73023 * 180.19131 * 17 16 15 24 24 C 1.53181 * 109.54099 * 65.75269 * 11 10 9 25 25 C 1.53279 * 109.06220 * 176.85272 * 24 11 10 26 26 O 1.42905 * 109.46276 * 302.44833 * 25 24 11 27 27 C 1.42913 * 114.09638 * 61.15650 * 26 25 24 28 28 C 1.53089 * 109.41490 * 298.84175 * 27 26 25 29 29 H 0.96993 * 120.00142 * 0.02562 * 1 2 3 30 30 H 0.97006 * 120.00108 * 359.97438 * 9 7 2 31 31 H 1.09009 * 109.47183 * 55.03489 * 10 9 7 32 32 H 1.08998 * 109.47225 * 295.03332 * 10 9 7 33 33 H 0.97008 * 120.00018 * 123.67783 * 12 11 10 34 34 H 1.08006 * 126.84337 * 0.03481 * 16 15 13 35 35 H 1.07999 * 125.72634 * 180.02562 * 19 18 17 36 36 H 1.08999 * 109.57854 * 102.25118 * 20 18 17 37 37 H 1.08995 * 109.57942 * 222.64564 * 20 18 17 38 38 H 1.08999 * 109.45042 * 171.26746 * 21 20 18 39 39 H 1.09000 * 109.45060 * 291.19531 * 21 20 18 40 40 H 1.09000 * 109.51954 * 49.72508 * 22 21 20 41 41 H 1.09002 * 109.52523 * 169.85685 * 22 21 20 42 42 H 1.08993 * 109.71814 * 44.88602 * 23 17 16 43 43 H 1.08992 * 109.75358 * 284.24901 * 23 17 16 44 44 H 1.08994 * 109.52128 * 296.84654 * 24 11 10 45 45 H 1.09000 * 109.51711 * 57.03488 * 24 11 10 46 46 H 1.09001 * 109.45888 * 182.45169 * 25 24 11 47 47 H 1.08999 * 109.46731 * 62.44705 * 25 24 11 48 48 H 1.08997 * 109.47649 * 178.85904 * 27 26 25 49 49 H 1.08996 * 109.48933 * 58.83329 * 27 26 25 50 50 H 1.08995 * 109.52298 * 297.70833 * 28 27 26 51 51 H 1.08998 * 109.57018 * 177.54438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0687 -4.8170 0.1254 12 7 0.2263 -4.6176 1.3073 13 6 0.7930 -4.4576 2.5196 14 8 1.9965 -4.5773 2.6489 15 6 -0.0448 -4.1377 3.6877 16 6 -1.5005 -3.9537 3.7045 17 6 -1.8309 -3.6804 4.9748 18 7 -0.6940 -3.6722 5.7406 19 6 0.3778 -3.9464 4.9744 20 6 -0.6790 -3.3992 7.1853 21 6 -1.9946 -2.7180 7.5733 22 6 -3.1735 -3.5362 7.0387 23 6 -3.2184 -3.4142 5.5103 24 6 0.1887 -4.8770 -1.1269 25 6 -0.7440 -6.0891 -1.0258 26 8 0.0346 -7.2774 -0.8704 27 6 0.8421 -7.2958 0.3085 28 6 1.8384 -6.1345 0.2612 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.7500 -3.6769 0.8428 32 1 2.6165 -3.7540 -0.9306 33 1 -0.7393 -4.5967 1.2167 34 1 -2.1723 -4.0264 2.8619 35 1 1.4001 -4.0048 5.3177 36 1 -0.5773 -4.3361 7.7331 37 1 0.1569 -2.7417 7.4241 38 1 -2.0622 -2.6510 8.6591 39 1 -2.0245 -1.7160 7.1455 40 1 -3.0468 -4.5824 7.3171 41 1 -4.1029 -3.1562 7.4630 42 1 -3.9163 -4.1459 5.1034 43 1 -3.5346 -2.4093 5.2308 44 1 -0.4029 -3.9645 -1.2004 45 1 0.8191 -4.9757 -2.0106 46 1 -1.3430 -6.1631 -1.9334 47 1 -1.4018 -5.9705 -0.1648 48 1 1.3856 -8.2391 0.3620 49 1 0.2053 -7.1930 1.1871 50 1 2.5019 -6.2584 -0.5946 51 1 2.4262 -6.1200 1.1790 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700250883.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:49 Heat of formation + Delta-G solvation = -26.621945 kcal Electronic energy + Delta-G solvation = -32266.901794 eV Core-core repulsion = 28166.900600 eV Total energy + Delta-G solvation = -4100.001194 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.41784 -40.13090 -37.96329 -35.99970 -35.40192 -33.50550 -32.82584 -31.48920 -30.91556 -30.27922 -29.23114 -27.45338 -26.40719 -24.58173 -23.62137 -23.35444 -22.52984 -21.63472 -21.32419 -19.82382 -18.70046 -18.44678 -17.28369 -17.10650 -16.25320 -15.79282 -15.70086 -15.59991 -15.24367 -14.61182 -14.45204 -14.28579 -14.17391 -14.07477 -13.82060 -13.62560 -13.43140 -13.28311 -12.99835 -12.67307 -12.60023 -12.24854 -12.19276 -11.99455 -11.75472 -11.53407 -11.38207 -11.34833 -11.17473 -11.05066 -11.02283 -10.81818 -10.74948 -10.36503 -10.19267 -9.97935 -9.60030 -9.37688 -9.08944 -8.68677 -8.44912 -8.27511 -7.92197 -6.74268 -5.64936 -2.90188 2.13128 2.58715 2.83294 3.49901 3.54832 3.57200 3.80009 4.07526 4.16466 4.26709 4.40303 4.47965 4.68575 4.69143 4.95758 4.97646 5.08084 5.15973 5.19699 5.21739 5.22464 5.29669 5.37709 5.40517 5.50403 5.54870 5.59267 5.60166 5.66550 5.70981 5.75165 5.86850 5.90732 5.91677 6.07594 6.08983 6.20891 6.23005 6.32090 6.41930 6.45738 6.62498 6.70693 6.99203 7.04010 7.21561 7.28042 7.37989 7.38482 7.82611 8.19651 8.54671 8.96582 9.66031 10.25240 10.61316 11.58358 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007035 B = 0.004552 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3979.329002 B = 6149.455456 C = 8861.495744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.903 3.097 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.284 1.284 7 C -0.226 4.226 8 H 0.067 0.933 9 N -0.723 5.723 10 C 0.142 3.858 11 C 0.177 3.823 12 N -0.709 5.709 13 C 0.605 3.395 14 O -0.549 6.549 15 C -0.219 4.219 16 C -0.159 4.159 17 C 0.011 3.989 18 N -0.445 5.445 19 C 0.073 3.927 20 C 0.104 3.896 21 C -0.135 4.135 22 C -0.123 4.123 23 C -0.051 4.051 24 C -0.155 4.155 25 C 0.061 3.939 26 O -0.387 6.387 27 C 0.066 3.934 28 C -0.163 4.163 29 H 0.252 0.748 30 H 0.382 0.618 31 H 0.050 0.950 32 H 0.018 0.982 33 H 0.393 0.607 34 H 0.142 0.858 35 H 0.170 0.830 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.092 0.908 47 H 0.046 0.954 48 H 0.087 0.913 49 H 0.048 0.952 50 H 0.075 0.925 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.133 -12.985 12.902 20.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.211 4.211 3 Si 0.735 3.265 4 H -0.219 1.219 5 H -0.220 1.220 6 H -0.209 1.209 7 C -0.357 4.357 8 H 0.085 0.915 9 N -0.367 5.367 10 C 0.014 3.986 11 C 0.091 3.909 12 N -0.360 5.360 13 C 0.394 3.606 14 O -0.429 6.429 15 C -0.229 4.229 16 C -0.183 4.183 17 C -0.096 4.096 18 N -0.123 5.123 19 C -0.062 4.062 20 C -0.018 4.018 21 C -0.172 4.172 22 C -0.161 4.161 23 C -0.089 4.089 24 C -0.193 4.193 25 C -0.015 4.015 26 O -0.306 6.306 27 C -0.010 4.010 28 C -0.202 4.202 29 H 0.061 0.939 30 H 0.216 0.784 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.227 0.773 34 H 0.159 0.841 35 H 0.188 0.812 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.108 0.892 45 H 0.103 0.897 46 H 0.110 0.890 47 H 0.065 0.935 48 H 0.105 0.895 49 H 0.067 0.933 50 H 0.093 0.907 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.135 -13.015 13.216 19.873 hybrid contribution -0.182 1.509 0.125 1.525 sum -7.317 -11.506 13.341 19.076 Atomic orbital electron populations 1.69652 1.04941 1.25188 1.58744 1.24645 0.95475 0.97332 1.03676 0.86232 0.78697 0.84206 0.77383 1.21903 1.22002 1.20934 1.19226 0.90966 0.84248 1.41293 0.91486 1.42190 1.05600 0.99651 1.89251 1.21078 0.93613 0.85086 0.98850 1.20507 0.91296 0.95114 0.83998 1.45667 1.09491 1.74389 1.06423 1.17121 0.86552 0.75071 0.81899 1.90670 1.14684 1.52000 1.85510 1.20358 0.93446 1.15777 0.93300 1.21601 0.93861 1.07462 0.95369 1.20188 0.88392 1.10085 0.90954 1.43834 1.06217 1.54480 1.07751 1.21579 0.91983 1.02446 0.90168 1.22023 0.99985 1.01252 0.78504 1.21851 0.93351 1.00230 1.01815 1.21623 0.98362 1.00518 0.95601 1.20334 0.91118 1.02827 0.94616 1.22466 0.99533 0.99308 0.97973 1.22622 0.92819 0.84784 1.01308 1.87879 1.59517 1.39172 1.44020 1.22504 0.92563 0.98550 0.87410 1.22551 0.98964 0.94154 1.04503 0.93867 0.78428 0.93237 0.96453 0.77259 0.84074 0.81238 0.90202 0.89361 0.89785 0.90543 0.91502 0.90767 0.89780 0.90091 0.89249 0.89677 0.88957 0.93528 0.89471 0.93348 0.90668 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.73 13.06 55.49 0.72 -28.00 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 3 Si 0.90 23.38 29.55 -169.99 -5.02 18.36 16 4 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 5 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 6 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.23 -6.63 9.99 -15.06 -0.15 -6.78 16 8 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 9 N -0.72 -18.94 5.21 -59.91 -0.31 -19.25 16 10 C 0.14 3.16 4.80 -4.04 -0.02 3.14 16 11 C 0.18 3.10 0.32 -131.63 -0.04 3.06 16 12 N -0.71 -12.20 3.74 -48.54 -0.18 -12.38 16 13 C 0.60 11.62 7.22 -12.59 -0.09 11.52 16 14 O -0.55 -11.97 13.21 5.25 0.07 -11.90 16 15 C -0.22 -3.77 6.29 -103.32 -0.65 -4.42 16 16 C -0.16 -2.38 10.48 -37.61 -0.39 -2.77 16 17 C 0.01 0.15 6.53 -81.52 -0.53 -0.38 16 18 N -0.45 -5.65 3.11 -111.87 -0.35 -6.00 16 19 C 0.07 1.11 11.18 -16.88 -0.19 0.92 16 20 C 0.10 0.89 6.89 -3.68 -0.03 0.86 16 21 C -0.13 -0.96 5.91 -26.59 -0.16 -1.12 16 22 C -0.12 -0.88 5.96 -26.46 -0.16 -1.04 16 23 C -0.05 -0.48 6.26 -27.49 -0.17 -0.65 16 24 C -0.15 -2.43 4.84 -26.49 -0.13 -2.56 16 25 C 0.06 0.81 6.67 37.30 0.25 1.06 16 26 O -0.39 -5.61 10.77 -35.23 -0.38 -5.99 16 27 C 0.07 0.92 6.68 37.20 0.25 1.17 16 28 C -0.16 -2.57 4.81 -26.59 -0.13 -2.70 16 29 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.38 10.25 6.51 -40.82 -0.27 9.98 16 31 H 0.05 1.23 6.26 -51.92 -0.33 0.90 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.39 6.07 6.56 -40.82 -0.27 5.80 16 34 H 0.14 1.89 7.71 -52.48 -0.40 1.49 16 35 H 0.17 2.39 8.06 -52.49 -0.42 1.97 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.64 8.11 -51.93 -0.42 0.22 16 40 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 41 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.09 1.54 7.22 -51.93 -0.37 1.16 16 45 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 46 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.05 0.57 7.02 -51.93 -0.36 0.20 16 48 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.05 0.67 7.75 -51.93 -0.40 0.27 16 50 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 51 H 0.09 1.65 6.24 -51.93 -0.32 1.32 16 LS Contribution 395.55 15.07 5.96 5.96 Total: -1.00 -35.53 395.55 -10.11 -45.64 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -8.19 Total: 14.84 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -2.43 Total: -1.27 kcal Atomic # 7 Polarization: -65.52 SS G_CDS: -0.12 Total: -65.64 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.31 Total: -17.89 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -5.02 Total: 18.36 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.53 -10.11 -45.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700250883.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.018 kcal (2) G-P(sol) polarization free energy of solvation -35.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds