Wall clock time and date at job start Wed Apr 1 2020 04:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 119.99628 * 2 1 4 4 H 1.48507 * 109.47217 * 269.99730 * 3 2 1 5 5 H 1.48502 * 109.47530 * 29.99593 * 3 2 1 6 6 H 1.48497 * 109.47386 * 149.99657 * 3 2 1 7 7 C 1.38808 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99901 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00162 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00092 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47373 * 175.03268 * 10 9 7 12 12 N 1.46500 * 109.54087 * 305.57852 * 11 10 9 13 13 C 1.34775 * 120.00217 * 303.95075 * 12 11 10 14 14 O 1.21627 * 119.99797 * 354.54973 * 13 12 11 15 15 C 1.47265 * 120.00271 * 174.54490 * 13 12 11 16 16 C 1.46742 * 126.92158 * 359.68882 * 15 13 12 17 17 C 1.34070 * 106.31331 * 179.89326 * 16 15 13 18 18 N 1.37080 * 109.03690 * 0.40958 * 17 16 15 19 19 C 1.34580 * 109.95015 * 359.68737 * 18 17 16 20 20 C 1.47033 * 123.95414 * 179.63055 * 18 17 16 21 21 C 1.53147 * 108.82879 * 342.44508 * 20 18 17 22 22 C 1.53132 * 109.58831 * 51.23323 * 21 20 18 23 23 C 1.51089 * 126.73023 * 180.19131 * 17 16 15 24 24 C 1.53181 * 109.54099 * 65.75269 * 11 10 9 25 25 C 1.53279 * 109.06220 * 176.85272 * 24 11 10 26 26 O 1.42905 * 109.46276 * 302.44833 * 25 24 11 27 27 C 1.42913 * 114.09638 * 61.15650 * 26 25 24 28 28 C 1.53089 * 109.41490 * 298.84175 * 27 26 25 29 29 H 0.96993 * 120.00142 * 0.02562 * 1 2 3 30 30 H 0.97006 * 120.00108 * 359.97438 * 9 7 2 31 31 H 1.09009 * 109.47183 * 55.03489 * 10 9 7 32 32 H 1.08998 * 109.47225 * 295.03332 * 10 9 7 33 33 H 0.97008 * 120.00018 * 123.67783 * 12 11 10 34 34 H 1.08006 * 126.84337 * 0.03481 * 16 15 13 35 35 H 1.07999 * 125.72634 * 180.02562 * 19 18 17 36 36 H 1.08999 * 109.57854 * 102.25118 * 20 18 17 37 37 H 1.08995 * 109.57942 * 222.64564 * 20 18 17 38 38 H 1.08999 * 109.45042 * 171.26746 * 21 20 18 39 39 H 1.09000 * 109.45060 * 291.19531 * 21 20 18 40 40 H 1.09000 * 109.51954 * 49.72508 * 22 21 20 41 41 H 1.09002 * 109.52523 * 169.85685 * 22 21 20 42 42 H 1.08993 * 109.71814 * 44.88602 * 23 17 16 43 43 H 1.08992 * 109.75358 * 284.24901 * 23 17 16 44 44 H 1.08994 * 109.52128 * 296.84654 * 24 11 10 45 45 H 1.09000 * 109.51711 * 57.03488 * 24 11 10 46 46 H 1.09001 * 109.45888 * 182.45169 * 25 24 11 47 47 H 1.08999 * 109.46731 * 62.44705 * 25 24 11 48 48 H 1.08997 * 109.47649 * 178.85904 * 27 26 25 49 49 H 1.08996 * 109.48933 * 58.83329 * 27 26 25 50 50 H 1.08995 * 109.52298 * 297.70833 * 28 27 26 51 51 H 1.08998 * 109.57018 * 177.54438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0687 -4.8170 0.1254 12 7 0.2263 -4.6176 1.3073 13 6 0.7930 -4.4576 2.5196 14 8 1.9965 -4.5773 2.6489 15 6 -0.0448 -4.1377 3.6877 16 6 -1.5005 -3.9537 3.7045 17 6 -1.8309 -3.6804 4.9748 18 7 -0.6940 -3.6722 5.7406 19 6 0.3778 -3.9464 4.9744 20 6 -0.6790 -3.3992 7.1853 21 6 -1.9946 -2.7180 7.5733 22 6 -3.1735 -3.5362 7.0387 23 6 -3.2184 -3.4142 5.5103 24 6 0.1887 -4.8770 -1.1269 25 6 -0.7440 -6.0891 -1.0258 26 8 0.0346 -7.2774 -0.8704 27 6 0.8421 -7.2958 0.3085 28 6 1.8384 -6.1345 0.2612 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.7500 -3.6769 0.8428 32 1 2.6165 -3.7540 -0.9306 33 1 -0.7393 -4.5967 1.2167 34 1 -2.1723 -4.0264 2.8619 35 1 1.4001 -4.0048 5.3177 36 1 -0.5773 -4.3361 7.7331 37 1 0.1569 -2.7417 7.4241 38 1 -2.0622 -2.6510 8.6591 39 1 -2.0245 -1.7160 7.1455 40 1 -3.0468 -4.5824 7.3171 41 1 -4.1029 -3.1562 7.4630 42 1 -3.9163 -4.1459 5.1034 43 1 -3.5346 -2.4093 5.2308 44 1 -0.4029 -3.9645 -1.2004 45 1 0.8191 -4.9757 -2.0106 46 1 -1.3430 -6.1631 -1.9334 47 1 -1.4018 -5.9705 -0.1648 48 1 1.3856 -8.2391 0.3620 49 1 0.2053 -7.1930 1.1871 50 1 2.5019 -6.2584 -0.5946 51 1 2.4262 -6.1200 1.1790 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700250883.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:48 Heat of formation + Delta-G solvation = -49.877058 kcal Electronic energy + Delta-G solvation = -32267.910212 eV Core-core repulsion = 28166.900600 eV Total energy + Delta-G solvation = -4101.009612 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.47031 -41.48165 -39.27724 -37.20151 -36.60427 -35.41111 -33.79367 -33.05247 -32.26966 -31.99292 -30.26796 -28.36339 -28.15336 -25.63726 -25.26224 -24.64094 -23.81854 -22.93938 -22.41206 -21.03671 -20.14591 -19.44069 -19.20743 -18.41038 -17.38413 -16.99340 -16.90444 -16.80764 -16.53761 -16.25604 -15.93143 -15.45166 -15.28173 -15.16474 -15.07025 -14.87390 -14.65964 -14.51224 -14.42906 -14.16683 -13.79295 -13.59964 -13.54591 -13.21069 -13.11316 -13.02962 -12.80146 -12.77923 -12.41599 -12.29781 -12.12805 -11.95770 -11.94547 -11.78417 -11.72736 -11.61272 -11.35033 -11.00568 -10.65681 -10.43966 -9.86586 -9.44226 -9.05981 -8.93553 -7.94356 -5.20320 0.86510 1.42123 1.44031 1.48886 1.52409 1.86571 2.43645 2.54905 2.76960 2.96899 3.38164 3.60044 3.61020 3.75647 3.80661 3.82160 3.89147 3.90708 4.02512 4.13530 4.23878 4.27413 4.32917 4.39004 4.45958 4.49715 4.52646 4.60070 4.70178 4.76336 4.81621 4.86174 4.87854 4.88979 4.89417 4.93687 5.04807 5.08931 5.13028 5.13637 5.17253 5.22851 5.29599 5.32470 5.46175 5.74382 5.85350 6.12565 6.24855 6.27811 6.38425 6.79597 7.35025 7.51417 8.09571 8.38682 9.28569 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007035 B = 0.004552 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3979.329002 B = 6149.455456 C = 8861.495744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.067 4.067 3 Si 0.967 3.033 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.243 4.243 8 H 0.061 0.939 9 N -0.726 5.726 10 C 0.144 3.856 11 C 0.181 3.819 12 N -0.700 5.700 13 C 0.596 3.404 14 O -0.586 6.586 15 C -0.257 4.257 16 C -0.184 4.184 17 C 0.018 3.982 18 N -0.439 5.439 19 C 0.064 3.936 20 C 0.092 3.908 21 C -0.132 4.132 22 C -0.119 4.119 23 C -0.053 4.053 24 C -0.148 4.148 25 C 0.066 3.934 26 O -0.390 6.390 27 C 0.074 3.926 28 C -0.156 4.156 29 H 0.250 0.750 30 H 0.377 0.623 31 H 0.021 0.979 32 H 0.017 0.983 33 H 0.402 0.598 34 H 0.149 0.851 35 H 0.173 0.827 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.117 0.883 47 H 0.058 0.942 48 H 0.110 0.890 49 H 0.048 0.952 50 H 0.080 0.920 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.787 -13.479 14.202 21.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.260 4.260 3 Si 0.797 3.203 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.375 4.375 8 H 0.079 0.921 9 N -0.369 5.369 10 C 0.017 3.983 11 C 0.095 3.905 12 N -0.351 5.351 13 C 0.386 3.614 14 O -0.469 6.469 15 C -0.267 4.267 16 C -0.207 4.207 17 C -0.090 4.090 18 N -0.115 5.115 19 C -0.073 4.073 20 C -0.027 4.027 21 C -0.169 4.169 22 C -0.157 4.157 23 C -0.091 4.091 24 C -0.186 4.186 25 C -0.010 4.010 26 O -0.309 6.309 27 C -0.003 4.003 28 C -0.195 4.195 29 H 0.059 0.941 30 H 0.210 0.790 31 H 0.039 0.961 32 H 0.035 0.965 33 H 0.237 0.763 34 H 0.167 0.833 35 H 0.190 0.810 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.132 0.868 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.098 0.902 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.135 0.865 47 H 0.077 0.923 48 H 0.128 0.872 49 H 0.066 0.934 50 H 0.098 0.902 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.807 -13.529 14.521 21.713 hybrid contribution 0.363 1.677 -0.221 1.730 sum -8.444 -11.852 14.300 20.403 Atomic orbital electron populations 1.69790 1.06119 1.25787 1.59480 1.25396 0.96427 1.00399 1.03767 0.85233 0.77512 0.80009 0.77569 1.20991 1.21822 1.20490 1.19511 0.91000 0.85775 1.41255 0.92144 1.42228 1.05390 1.00216 1.89047 1.21103 0.94307 0.85583 0.97356 1.20414 0.91004 0.93975 0.85142 1.45580 1.09848 1.73765 1.05863 1.17561 0.86416 0.74501 0.82876 1.90635 1.16221 1.53863 1.86160 1.20452 0.94675 1.18193 0.93411 1.21791 0.92934 1.09124 0.96889 1.20780 0.90022 1.07746 0.90487 1.44161 1.05327 1.52744 1.09308 1.21693 0.92925 1.02427 0.90223 1.22442 1.01433 1.02816 0.76056 1.21893 0.92340 0.99108 1.03597 1.21637 0.99371 1.01019 0.93632 1.20505 0.88847 1.03182 0.96526 1.22394 0.99451 1.00083 0.96659 1.22696 0.92168 0.83059 1.03119 1.87888 1.59555 1.39344 1.44111 1.22499 0.92069 0.98413 0.87332 1.22473 0.99275 0.94032 1.03732 0.94067 0.78975 0.96077 0.96533 0.76254 0.83325 0.80962 0.88019 0.88715 0.86766 0.91965 0.90933 0.88547 0.88263 0.90151 0.90887 0.89785 0.86504 0.92337 0.87209 0.93363 0.90182 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.79 13.06 21.65 0.28 -59.51 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.97 48.57 29.55 68.60 2.03 50.59 16 4 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 5 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 6 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 7 C -0.24 -14.68 9.99 84.03 0.84 -13.84 16 8 H 0.06 3.64 7.83 -2.91 -0.02 3.62 16 9 N -0.73 -39.43 5.21 -343.44 -1.79 -41.22 16 10 C 0.14 6.72 4.80 86.38 0.41 7.14 16 11 C 0.18 6.52 0.32 3.72 0.00 6.53 16 12 N -0.70 -24.97 3.74 -425.74 -1.59 -26.56 16 13 C 0.60 24.08 7.22 86.62 0.63 24.71 16 14 O -0.59 -27.17 13.21 -4.12 -0.05 -27.23 16 15 C -0.26 -9.23 6.29 -19.02 -0.12 -9.35 16 16 C -0.18 -5.59 10.48 23.54 0.25 -5.34 16 17 C 0.02 0.46 6.53 40.91 0.27 0.73 16 18 N -0.44 -10.86 3.11 -507.84 -1.58 -12.43 16 19 C 0.06 2.01 11.18 83.93 0.94 2.95 16 20 C 0.09 1.39 6.89 86.33 0.59 1.99 16 21 C -0.13 -1.50 5.91 30.69 0.18 -1.32 16 22 C -0.12 -1.31 5.96 30.77 0.18 -1.13 16 23 C -0.05 -0.88 6.26 30.10 0.19 -0.69 16 24 C -0.15 -4.63 4.84 30.75 0.15 -4.48 16 25 C 0.07 1.64 6.67 72.08 0.48 2.12 16 26 O -0.39 -10.52 10.77 -148.98 -1.60 -12.12 16 27 C 0.07 1.94 6.68 72.01 0.48 2.42 16 28 C -0.16 -4.99 4.81 30.68 0.15 -4.84 16 29 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 30 H 0.38 20.95 6.51 -92.70 -0.60 20.35 16 31 H 0.02 1.12 6.26 -2.38 -0.01 1.10 16 32 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.40 12.73 6.56 -92.70 -0.61 12.12 16 34 H 0.15 4.05 7.71 -2.91 -0.02 4.03 16 35 H 0.17 5.12 8.06 -2.91 -0.02 5.09 16 36 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 38 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.06 0.91 8.11 -2.39 -0.02 0.89 16 40 H 0.07 0.76 8.12 -2.39 -0.02 0.74 16 41 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.07 2.55 7.22 -2.39 -0.02 2.53 16 45 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 46 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 47 H 0.06 1.33 7.02 -2.39 -0.02 1.31 16 48 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 49 H 0.05 1.29 7.75 -2.39 -0.02 1.27 16 50 H 0.08 2.44 8.14 -2.39 -0.02 2.43 16 51 H 0.08 2.76 6.24 -2.39 -0.01 2.74 16 Total: -1.00 -78.72 395.55 1.51 -77.21 By element: Atomic # 1 Polarization: 47.53 SS G_CDS: -0.26 Total: 47.26 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 6.09 Total: 4.00 kcal Atomic # 7 Polarization: -135.05 SS G_CDS: -4.68 Total: -139.73 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -1.66 Total: -39.35 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.03 Total: 50.59 kcal Total: -78.72 1.51 -77.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700250883.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.337 kcal (2) G-P(sol) polarization free energy of solvation -78.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds