Wall clock time and date at job start Wed Apr 1 2020 05:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 C 1.50701 * 109.46837 * 270.21259 * 7 6 5 9 9 O 1.21284 * 120.00148 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00104 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99970 * 0.02562 * 10 8 7 12 12 C 1.46496 * 120.00199 * 179.97438 * 10 8 7 13 13 C 1.53008 * 109.46987 * 90.00478 * 12 10 8 14 14 H 1.09000 * 109.46901 * 65.00126 * 13 12 10 15 15 C 1.53001 * 109.47112 * 184.99928 * 13 12 10 16 16 N 1.46900 * 109.47007 * 305.00410 * 13 12 10 17 17 C 1.46902 * 110.99760 * 154.99803 * 16 13 12 18 18 C 1.50700 * 109.46882 * 179.97438 * 17 16 13 19 19 O 1.21301 * 119.99895 * 359.97438 * 18 17 16 20 20 N 1.34775 * 120.00196 * 180.02562 * 18 17 16 21 21 C 1.37096 * 120.00090 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00122 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99840 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00196 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00027 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46651 * 60.00508 * 25 23 21 27 27 H 1.48503 * 109.47023 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47310 * 300.00600 * 25 23 21 29 29 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 31 31 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 32 32 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 33 33 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 34 34 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 35 35 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 36 36 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 37 37 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 38 38 H 1.08996 * 109.47313 * 89.99158 * 11 10 8 39 39 H 1.09001 * 109.46812 * 209.99763 * 11 10 8 40 40 H 1.09002 * 109.46459 * 329.99038 * 11 10 8 41 41 H 1.08997 * 109.47534 * 210.00678 * 12 10 8 42 42 H 1.08996 * 109.47366 * 330.00761 * 12 10 8 43 43 H 1.09000 * 109.47076 * 60.00305 * 15 13 12 44 44 H 1.08995 * 109.46573 * 180.02562 * 15 13 12 45 45 H 1.09001 * 109.47093 * 300.00083 * 15 13 12 46 46 H 1.00904 * 110.99465 * 278.95254 * 16 13 12 47 47 H 1.08992 * 109.47288 * 299.99492 * 17 16 13 48 48 H 1.08996 * 109.47007 * 60.00098 * 17 16 13 49 49 H 0.97000 * 119.99534 * 359.97438 * 20 18 17 50 50 H 0.96995 * 120.00532 * 179.97438 * 24 23 21 51 51 H 1.08001 * 119.99700 * 359.96970 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 6 4.5852 -2.9371 -1.4214 9 8 4.1916 -2.2543 -2.3432 10 7 5.2482 -4.0844 -1.6677 11 6 5.7241 -4.9090 -0.5542 12 6 5.4918 -4.5075 -3.0489 13 6 6.8257 -3.9331 -3.5305 14 1 7.6391 -4.3663 -2.9485 15 6 7.0216 -4.2700 -5.0101 16 7 6.8219 -2.4744 -3.3567 17 6 8.1905 -1.9560 -3.2285 18 6 8.1465 -0.4600 -3.0528 19 8 7.0799 0.1177 -3.0365 20 7 9.2921 0.2364 -2.9149 21 6 9.2521 1.5974 -2.7556 22 1 8.3025 2.1117 -2.7402 23 6 10.4333 2.3153 -2.6128 24 7 11.5887 1.6896 -2.6311 25 14 10.3788 4.1699 -2.3964 26 1 9.6066 4.5029 -1.1725 27 1 11.7623 4.6940 -2.2673 28 1 9.7244 4.7871 -3.5780 29 6 2.1981 -1.1970 -0.0005 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5140 33 1 1.6583 2.1326 0.0004 34 1 4.1204 2.1326 0.0010 35 1 5.3517 -0.0001 -0.0091 36 1 5.2866 -2.3718 0.5133 37 1 3.7450 -3.2618 0.5132 38 1 4.9523 -5.6275 -0.2783 39 1 6.6256 -5.4421 -0.8564 40 1 5.9487 -4.2707 0.3003 41 1 5.5273 -5.5960 -3.0947 42 1 4.6875 -4.1431 -3.6879 43 1 6.2082 -3.8368 -5.5921 44 1 7.9720 -3.8611 -5.3529 45 1 7.0244 -5.3523 -5.1390 46 1 6.3330 -2.0213 -4.1142 47 1 8.6713 -2.4099 -2.3621 48 1 8.7568 -2.1994 -4.1275 49 1 10.1450 -0.2256 -2.9284 50 1 12.4133 2.1906 -2.5318 51 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700763591.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:57 Heat of formation + Delta-G solvation = -47.283791 kcal Electronic energy + Delta-G solvation = -31324.198720 eV Core-core repulsion = 27223.301561 eV Total energy + Delta-G solvation = -4100.897159 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.93796 -38.84045 -38.15494 -36.56507 -34.75614 -33.79071 -33.28365 -31.80798 -31.22096 -30.69537 -28.22269 -27.17402 -26.64875 -26.18430 -25.24877 -23.83039 -21.94699 -21.13952 -20.41746 -19.23452 -18.77257 -17.81059 -16.81750 -16.38130 -16.10062 -15.82528 -15.49769 -15.15690 -14.88589 -14.58480 -14.49787 -14.36372 -13.82365 -13.68105 -13.48930 -13.22250 -13.02224 -12.96641 -12.89813 -12.71865 -12.50901 -12.32359 -12.24357 -12.06529 -12.00457 -11.72403 -11.64072 -11.51026 -11.44174 -11.24401 -10.97157 -10.87426 -10.79551 -10.70660 -10.40211 -10.15261 -9.42437 -9.38773 -8.52398 -8.49723 -8.28426 -8.22773 -7.89269 -7.77661 -6.35473 -3.75559 1.61185 1.70619 3.08670 3.23916 3.28312 3.28655 3.33671 4.01163 4.04686 4.17571 4.43366 4.80076 4.90557 4.94438 4.98280 5.07705 5.12526 5.16968 5.24776 5.28658 5.30774 5.32677 5.38473 5.39286 5.48786 5.52679 5.54516 5.62050 5.69740 5.70978 5.79097 5.80163 5.85680 5.87479 5.95424 5.98098 6.12535 6.16339 6.30682 6.36991 6.38467 6.71400 6.77468 6.82971 6.92404 7.30778 7.41712 7.60916 7.67232 7.88509 8.13974 8.66944 8.70078 9.25607 9.62771 10.15987 10.82628 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007451 B = 0.003837 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3756.913002 B = 7294.764877 C =10268.491770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.097 4.097 3 C -0.124 4.124 4 C -0.111 4.111 5 C -0.090 4.090 6 C -0.060 4.060 7 C -0.098 4.098 8 C 0.527 3.473 9 O -0.501 6.501 10 N -0.614 5.614 11 C 0.082 3.918 12 C 0.132 3.868 13 C 0.065 3.935 14 H 0.073 0.927 15 C -0.182 4.182 16 N -0.648 5.648 17 C 0.052 3.948 18 C 0.442 3.558 19 O -0.570 6.570 20 N -0.569 5.569 21 C -0.295 4.295 22 H 0.101 0.899 23 C 0.021 3.979 24 N -0.905 5.905 25 Si 0.928 3.072 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 C -0.110 4.110 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.049 0.951 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.353 0.647 47 H 0.079 0.921 48 H 0.038 0.962 49 H 0.390 0.610 50 H 0.270 0.730 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.454 -15.167 5.687 21.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.097 4.097 3 C -0.142 4.142 4 C -0.129 4.129 5 C -0.108 4.108 6 C -0.061 4.061 7 C -0.138 4.138 8 C 0.314 3.686 9 O -0.373 6.373 10 N -0.349 5.349 11 C -0.062 4.062 12 C 0.008 3.992 13 C -0.047 4.047 14 H 0.092 0.908 15 C -0.241 4.241 16 N -0.280 5.280 17 C -0.081 4.081 18 C 0.227 3.773 19 O -0.453 6.453 20 N -0.206 5.206 21 C -0.425 4.425 22 H 0.119 0.881 23 C -0.180 4.180 24 N -0.547 5.547 25 Si 0.756 3.244 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.200 1.200 29 C -0.128 4.128 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.174 0.826 47 H 0.097 0.903 48 H 0.056 0.944 49 H 0.223 0.777 50 H 0.080 0.920 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.330 -14.323 5.897 21.102 hybrid contribution 1.368 0.472 -0.867 1.687 sum -12.962 -13.851 5.030 19.626 Atomic orbital electron populations 1.20731 0.91681 1.02152 1.02038 1.19753 0.95601 0.93226 1.01071 1.20956 0.94321 0.97162 1.01725 1.21122 0.94102 0.98273 0.99417 1.21057 1.00283 0.91776 0.97710 1.19219 0.93221 0.93707 0.99909 1.20657 1.01651 0.95806 0.95638 1.20139 0.77684 0.79985 0.90815 1.90724 1.49452 1.51205 1.45913 1.47516 1.57843 1.23438 1.06063 1.21707 0.99200 0.95250 0.90044 1.21395 0.97326 0.97468 0.83028 1.22014 0.97967 0.90303 0.94413 0.90835 1.22475 1.02298 1.01705 0.97665 1.60105 1.14195 1.01682 1.52025 1.21682 0.90707 0.95392 1.00338 1.19871 0.85048 0.88077 0.84326 1.90582 1.29277 1.70581 1.54878 1.41860 1.06860 1.07719 1.64194 1.19634 0.94527 0.82112 1.46209 0.88101 1.25221 0.94679 1.00451 0.97647 1.69602 0.97542 1.36735 1.50842 0.85956 0.76991 0.82414 0.79087 1.19938 1.21039 1.19981 1.20710 0.93334 0.97135 1.01606 0.91490 0.91980 0.91905 0.86622 0.86085 0.85851 0.88367 0.89048 0.93235 0.91527 0.91220 0.90975 0.90121 0.92193 0.92386 0.92348 0.82624 0.90319 0.94424 0.77677 0.91971 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.01 36.01 0.36 -0.74 16 2 C -0.10 -1.31 5.88 -104.62 -0.62 -1.92 16 3 C -0.12 -1.77 9.70 -39.58 -0.38 -2.15 16 4 C -0.11 -1.80 10.05 -39.58 -0.40 -2.19 16 5 C -0.09 -1.55 9.70 -39.58 -0.38 -1.93 16 6 C -0.06 -0.92 4.37 -104.63 -0.46 -1.37 16 7 C -0.10 -1.25 4.38 -29.04 -0.13 -1.37 16 8 C 0.53 8.02 7.01 -10.98 -0.08 7.94 16 9 O -0.50 -9.87 14.76 5.55 0.08 -9.79 16 10 N -0.61 -7.36 2.78 -181.57 -0.50 -7.86 16 11 C 0.08 0.66 10.24 59.85 0.61 1.27 16 12 C 0.13 1.50 5.20 -4.04 -0.02 1.48 16 13 C 0.07 0.81 2.89 -67.71 -0.20 0.61 16 14 H 0.07 0.87 7.80 -51.93 -0.40 0.46 16 15 C -0.18 -1.97 9.16 37.16 0.34 -1.63 16 16 N -0.65 -11.07 4.15 -107.99 -0.45 -11.52 16 17 C 0.05 0.95 5.97 -4.97 -0.03 0.92 16 18 C 0.44 10.75 7.82 -10.99 -0.09 10.67 16 19 O -0.57 -16.07 15.78 5.54 0.09 -15.98 16 20 N -0.57 -14.76 5.29 -10.96 -0.06 -14.82 16 21 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.91 -25.08 13.05 55.50 0.72 -24.36 16 25 Si 0.93 21.55 29.55 -169.99 -5.02 16.53 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 29 C -0.11 -1.54 9.36 -39.58 -0.37 -1.91 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 32 H 0.06 0.55 8.09 -51.92 -0.42 0.13 16 33 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 35 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 36 H 0.10 1.18 7.35 -51.93 -0.38 0.80 16 37 H 0.09 0.87 8.05 -51.93 -0.42 0.45 16 38 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 40 H 0.07 0.54 6.44 -51.93 -0.33 0.20 16 41 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 42 H 0.08 1.07 7.42 -51.93 -0.39 0.68 16 43 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 44 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.35 6.85 8.17 -39.29 -0.32 6.53 16 47 H 0.08 1.34 8.05 -51.93 -0.42 0.92 16 48 H 0.04 0.64 7.44 -51.93 -0.39 0.25 16 49 H 0.39 9.72 7.90 -40.82 -0.32 9.40 16 50 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 51 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 422.23 15.07 6.36 6.36 Total: -1.00 -35.04 422.23 -9.18 -44.21 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: -8.33 Total: 17.64 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -2.07 Total: -0.42 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -0.29 Total: -58.55 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: 0.17 Total: -25.77 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -35.04 -9.18 -44.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700763591.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.069 kcal (2) G-P(sol) polarization free energy of solvation -35.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds