Wall clock time and date at job start Wed Apr 1 2020 05:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 C 1.50701 * 109.46837 * 270.21259 * 7 6 5 9 9 O 1.21284 * 120.00148 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00104 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99970 * 0.02562 * 10 8 7 12 12 C 1.46496 * 120.00199 * 179.97438 * 10 8 7 13 13 C 1.53008 * 109.46987 * 90.00478 * 12 10 8 14 14 H 1.09000 * 109.46901 * 65.00126 * 13 12 10 15 15 C 1.53001 * 109.47112 * 184.99928 * 13 12 10 16 16 N 1.46900 * 109.47007 * 305.00410 * 13 12 10 17 17 C 1.46902 * 110.99760 * 154.99803 * 16 13 12 18 18 C 1.50700 * 109.46882 * 179.97438 * 17 16 13 19 19 O 1.21301 * 119.99895 * 359.97438 * 18 17 16 20 20 N 1.34775 * 120.00196 * 180.02562 * 18 17 16 21 21 C 1.37096 * 120.00090 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00122 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99840 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00196 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00027 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46651 * 60.00508 * 25 23 21 27 27 H 1.48503 * 109.47023 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47310 * 300.00600 * 25 23 21 29 29 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 31 31 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 32 32 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 33 33 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 34 34 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 35 35 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 36 36 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 37 37 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 38 38 H 1.08996 * 109.47313 * 89.99158 * 11 10 8 39 39 H 1.09001 * 109.46812 * 209.99763 * 11 10 8 40 40 H 1.09002 * 109.46459 * 329.99038 * 11 10 8 41 41 H 1.08997 * 109.47534 * 210.00678 * 12 10 8 42 42 H 1.08996 * 109.47366 * 330.00761 * 12 10 8 43 43 H 1.09000 * 109.47076 * 60.00305 * 15 13 12 44 44 H 1.08995 * 109.46573 * 180.02562 * 15 13 12 45 45 H 1.09001 * 109.47093 * 300.00083 * 15 13 12 46 46 H 1.00904 * 110.99465 * 278.95254 * 16 13 12 47 47 H 1.08992 * 109.47288 * 299.99492 * 17 16 13 48 48 H 1.08996 * 109.47007 * 60.00098 * 17 16 13 49 49 H 0.97000 * 119.99534 * 359.97438 * 20 18 17 50 50 H 0.96995 * 120.00532 * 179.97438 * 24 23 21 51 51 H 1.08001 * 119.99700 * 359.96970 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 6 4.5852 -2.9371 -1.4214 9 8 4.1916 -2.2543 -2.3432 10 7 5.2482 -4.0844 -1.6677 11 6 5.7241 -4.9090 -0.5542 12 6 5.4918 -4.5075 -3.0489 13 6 6.8257 -3.9331 -3.5305 14 1 7.6391 -4.3663 -2.9485 15 6 7.0216 -4.2700 -5.0101 16 7 6.8219 -2.4744 -3.3567 17 6 8.1905 -1.9560 -3.2285 18 6 8.1465 -0.4600 -3.0528 19 8 7.0799 0.1177 -3.0365 20 7 9.2921 0.2364 -2.9149 21 6 9.2521 1.5974 -2.7556 22 1 8.3025 2.1117 -2.7402 23 6 10.4333 2.3153 -2.6128 24 7 11.5887 1.6896 -2.6311 25 14 10.3788 4.1699 -2.3964 26 1 9.6066 4.5029 -1.1725 27 1 11.7623 4.6940 -2.2673 28 1 9.7244 4.7871 -3.5780 29 6 2.1981 -1.1970 -0.0005 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5140 33 1 1.6583 2.1326 0.0004 34 1 4.1204 2.1326 0.0010 35 1 5.3517 -0.0001 -0.0091 36 1 5.2866 -2.3718 0.5133 37 1 3.7450 -3.2618 0.5132 38 1 4.9523 -5.6275 -0.2783 39 1 6.6256 -5.4421 -0.8564 40 1 5.9487 -4.2707 0.3003 41 1 5.5273 -5.5960 -3.0947 42 1 4.6875 -4.1431 -3.6879 43 1 6.2082 -3.8368 -5.5921 44 1 7.9720 -3.8611 -5.3529 45 1 7.0244 -5.3523 -5.1390 46 1 6.3330 -2.0213 -4.1142 47 1 8.6713 -2.4099 -2.3621 48 1 8.7568 -2.1994 -4.1275 49 1 10.1450 -0.2256 -2.9284 50 1 12.4133 2.1906 -2.5318 51 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700763591.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:56 Heat of formation + Delta-G solvation = -70.529462 kcal Electronic energy + Delta-G solvation = -31325.206728 eV Core-core repulsion = 27223.301561 eV Total energy + Delta-G solvation = -4101.905167 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.03585 -40.20162 -39.78906 -37.83533 -36.06597 -35.67802 -34.35367 -33.29099 -32.91478 -32.00303 -29.23919 -28.00353 -27.89771 -27.63213 -26.24417 -25.61121 -23.09104 -22.22033 -21.48443 -21.09207 -19.97507 -19.78843 -17.89036 -17.78907 -17.43894 -16.94280 -16.82777 -16.52063 -16.38497 -16.08229 -15.81096 -15.62923 -15.50419 -15.02285 -14.58470 -14.46993 -14.21952 -14.02884 -13.89971 -13.80737 -13.62261 -13.56385 -13.38910 -13.17162 -13.13134 -13.06527 -12.90467 -12.74254 -12.67590 -12.66222 -12.45739 -12.32064 -12.13821 -11.89142 -11.85242 -11.80504 -11.51148 -10.57892 -10.32184 -10.01199 -9.65297 -9.47788 -9.41551 -9.03736 -8.47690 -5.95825 0.46100 0.52542 1.36641 1.37615 1.48820 2.00196 2.06910 2.27044 2.33622 2.90140 2.99617 3.19286 3.56127 3.75539 3.92987 3.96629 4.02182 4.06474 4.21410 4.24939 4.33733 4.36280 4.41014 4.45833 4.48245 4.52242 4.57492 4.60904 4.63906 4.68926 4.78550 4.82420 4.86397 4.86911 4.96999 5.00505 5.04677 5.08261 5.22526 5.26261 5.32271 5.38822 5.60476 5.68965 5.73889 5.82374 5.93599 6.17496 6.21403 6.46716 6.61167 6.68924 7.13011 7.56638 7.59649 8.14406 8.69818 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007451 B = 0.003837 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3756.913002 B = 7294.764877 C =10268.491770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.097 4.097 3 C -0.133 4.133 4 C -0.133 4.133 5 C -0.125 4.125 6 C -0.066 4.066 7 C -0.094 4.094 8 C 0.518 3.482 9 O -0.558 6.558 10 N -0.610 5.610 11 C 0.074 3.926 12 C 0.131 3.869 13 C 0.065 3.935 14 H 0.090 0.910 15 C -0.174 4.174 16 N -0.661 5.661 17 C 0.069 3.931 18 C 0.437 3.563 19 O -0.615 6.615 20 N -0.575 5.575 21 C -0.331 4.331 22 H 0.073 0.927 23 C -0.011 4.011 24 N -0.921 5.921 25 Si 0.989 3.011 26 H -0.273 1.273 27 H -0.267 1.267 28 H -0.274 1.274 29 C -0.117 4.117 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.138 0.862 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.130 0.870 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.115 0.885 42 H 0.056 0.944 43 H 0.047 0.953 44 H 0.049 0.951 45 H 0.089 0.911 46 H 0.335 0.665 47 H 0.098 0.902 48 H 0.058 0.942 49 H 0.395 0.605 50 H 0.278 0.722 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.030 -17.674 6.449 23.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.097 4.097 3 C -0.151 4.151 4 C -0.151 4.151 5 C -0.143 4.143 6 C -0.066 4.066 7 C -0.134 4.134 8 C 0.306 3.694 9 O -0.435 6.435 10 N -0.343 5.343 11 C -0.068 4.068 12 C 0.008 3.992 13 C -0.046 4.046 14 H 0.108 0.892 15 C -0.234 4.234 16 N -0.292 5.292 17 C -0.063 4.063 18 C 0.224 3.776 19 O -0.500 6.500 20 N -0.213 5.213 21 C -0.461 4.461 22 H 0.091 0.909 23 C -0.211 4.211 24 N -0.562 5.562 25 Si 0.813 3.187 26 H -0.198 1.198 27 H -0.191 1.191 28 H -0.199 1.199 29 C -0.135 4.135 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.156 0.844 34 H 0.133 0.867 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.148 0.852 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.133 0.867 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.108 0.892 46 H 0.154 0.846 47 H 0.116 0.884 48 H 0.075 0.925 49 H 0.228 0.772 50 H 0.087 0.913 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.855 -16.908 6.685 23.479 hybrid contribution 1.529 1.169 -1.105 2.220 sum -13.326 -15.739 5.580 21.364 Atomic orbital electron populations 1.20795 0.88769 1.03948 1.02792 1.20258 0.97755 0.92646 0.99029 1.21236 0.93456 0.98837 1.01527 1.21251 0.95466 0.97837 1.00577 1.20995 0.98984 0.93584 1.00745 1.19495 0.94205 0.93898 0.99017 1.20708 1.02215 0.95604 0.94826 1.20552 0.77450 0.80356 0.90992 1.90702 1.52101 1.53200 1.47511 1.47622 1.56500 1.22740 1.07436 1.22003 1.00790 0.95285 0.88765 1.21497 0.95722 0.99590 0.82406 1.22173 0.99227 0.87220 0.95932 0.89225 1.22384 1.01333 1.03592 0.96058 1.60116 1.12909 1.04418 1.51769 1.21512 0.92228 0.90647 1.01954 1.20965 0.83793 0.90619 0.82216 1.90560 1.30817 1.72301 1.56310 1.41908 1.07558 1.07165 1.64707 1.19558 0.94058 0.83648 1.48811 0.90903 1.25976 0.93967 1.04643 0.96516 1.69657 0.97940 1.38323 1.50283 0.85054 0.77752 0.77091 0.78831 1.19831 1.19099 1.19922 1.21081 0.92885 0.98563 1.00923 0.91053 0.90020 0.90385 0.84415 0.86712 0.89006 0.88100 0.85174 0.90551 0.89787 0.91021 0.86747 0.92512 0.93346 0.93178 0.89246 0.84619 0.88360 0.92450 0.77155 0.91307 0.84246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 10.01 71.24 0.71 -1.18 16 2 C -0.10 -2.55 5.88 -19.87 -0.12 -2.67 16 3 C -0.13 -3.89 9.70 22.27 0.22 -3.67 16 4 C -0.13 -4.68 10.05 22.27 0.22 -4.46 16 5 C -0.12 -4.69 9.70 22.27 0.22 -4.48 16 6 C -0.07 -2.07 4.37 -19.87 -0.09 -2.15 16 7 C -0.09 -2.37 4.38 29.10 0.13 -2.24 16 8 C 0.52 15.74 7.01 87.66 0.61 16.35 16 9 O -0.56 -22.92 14.76 -3.04 -0.04 -22.97 16 10 N -0.61 -13.49 2.78 -846.74 -2.35 -15.84 16 11 C 0.07 0.94 10.24 127.77 1.31 2.24 16 12 C 0.13 2.72 5.20 86.38 0.45 3.17 16 13 C 0.07 1.51 2.89 44.92 0.13 1.64 16 14 H 0.09 1.81 7.80 -2.39 -0.02 1.79 16 15 C -0.17 -3.45 9.16 71.98 0.66 -2.79 16 16 N -0.66 -22.84 4.15 -495.57 -2.05 -24.89 16 17 C 0.07 2.54 5.97 85.56 0.51 3.05 16 18 C 0.44 22.18 7.82 87.66 0.69 22.87 16 19 O -0.61 -36.89 15.78 -3.09 -0.05 -36.94 16 20 N -0.58 -30.97 5.29 -306.98 -1.62 -32.60 16 21 C -0.33 -19.68 9.68 84.04 0.81 -18.87 16 22 H 0.07 4.67 7.16 -2.91 -0.02 4.64 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 24 N -0.92 -51.06 13.05 21.66 0.28 -50.77 16 25 Si 0.99 44.67 29.55 68.60 2.03 46.70 16 26 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 28 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 29 C -0.12 -3.19 9.36 22.27 0.21 -2.98 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.08 1.15 8.09 -2.39 -0.02 1.13 16 32 H 0.08 1.16 8.09 -2.38 -0.02 1.14 16 33 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 34 H 0.11 3.95 8.06 -2.91 -0.02 3.93 16 35 H 0.09 3.89 8.06 -2.91 -0.02 3.86 16 36 H 0.10 2.45 7.35 -2.38 -0.02 2.43 16 37 H 0.13 2.16 8.05 -2.39 -0.02 2.14 16 38 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.08 0.81 8.07 -2.39 -0.02 0.79 16 40 H 0.07 0.91 6.44 -2.39 -0.02 0.89 16 41 H 0.11 1.42 8.07 -2.39 -0.02 1.40 16 42 H 0.06 1.48 7.42 -2.39 -0.02 1.46 16 43 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 44 H 0.05 1.07 7.45 -2.39 -0.02 1.05 16 45 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 46 H 0.34 13.64 8.17 -89.69 -0.73 12.90 16 47 H 0.10 3.24 8.05 -2.39 -0.02 3.22 16 48 H 0.06 1.90 7.44 -2.39 -0.02 1.88 16 49 H 0.39 20.12 7.90 -92.71 -0.73 19.39 16 50 H 0.28 14.40 8.31 -92.71 -0.77 13.63 16 51 H 0.14 2.98 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -82.08 422.23 2.80 -79.28 By element: Atomic # 1 Polarization: 54.89 SS G_CDS: -0.53 Total: 54.37 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 7.14 Total: 3.67 kcal Atomic # 7 Polarization: -118.36 SS G_CDS: -5.74 Total: -124.11 kcal Atomic # 8 Polarization: -59.82 SS G_CDS: -0.09 Total: -59.91 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -82.08 2.80 -79.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700763591.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.746 kcal (2) G-P(sol) polarization free energy of solvation -82.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds