Wall clock time and date at job start Wed Apr 1 2020 05:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38377 * 119.85467 * 2 1 4 4 C 1.37936 * 120.14420 * 179.97438 * 3 2 1 5 5 C 1.39596 * 119.85559 * 0.02562 * 4 3 2 6 6 C 1.47843 * 120.14523 * 179.97438 * 5 4 3 7 7 O 1.21557 * 119.99785 * 125.16355 * 6 5 4 8 8 N 1.34769 * 120.00703 * 305.17016 * 6 5 4 9 9 C 1.46504 * 119.99738 * 354.81042 * 8 6 5 10 10 C 1.46498 * 120.00686 * 175.08923 * 8 6 5 11 11 C 1.52994 * 109.47250 * 83.35692 * 10 8 6 12 12 H 1.09000 * 109.47401 * 297.45460 * 11 10 8 13 13 C 1.53003 * 109.46984 * 177.45669 * 11 10 8 14 14 N 1.46900 * 109.47001 * 57.45841 * 11 10 8 15 15 C 1.46902 * 111.00000 * 206.42427 * 14 11 10 16 16 C 1.50702 * 109.47309 * 179.97438 * 15 14 11 17 17 O 1.21293 * 119.99554 * 0.02562 * 16 15 14 18 18 N 1.34771 * 120.00040 * 180.02562 * 16 15 14 19 19 C 1.37096 * 120.00042 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00026 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99879 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00512 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99599 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46642 * 90.00267 * 23 21 19 25 25 H 1.48504 * 109.47016 * 209.99748 * 23 21 19 26 26 H 1.48498 * 109.47271 * 329.99990 * 23 21 19 27 27 C 1.39557 * 119.70877 * 0.25499 * 5 4 3 28 28 C 1.50701 * 120.07246 * 179.74760 * 27 5 4 29 29 C 1.37977 * 119.84990 * 359.44561 * 27 5 4 30 30 H 1.09000 * 109.47132 * 89.99828 * 1 2 3 31 31 H 1.08995 * 109.47198 * 210.00483 * 1 2 3 32 32 H 1.09004 * 109.47082 * 330.00615 * 1 2 3 33 33 H 1.08003 * 119.93127 * 359.97438 * 3 2 1 34 34 H 1.08004 * 120.07330 * 179.97438 * 4 3 2 35 35 H 1.09005 * 109.47037 * 62.38029 * 9 8 6 36 36 H 1.09001 * 109.47236 * 182.38048 * 9 8 6 37 37 H 1.09000 * 109.47179 * 302.38700 * 9 8 6 38 38 H 1.08999 * 109.47312 * 203.36225 * 10 8 6 39 39 H 1.09003 * 109.46891 * 323.35573 * 10 8 6 40 40 H 1.08994 * 109.47102 * 299.99701 * 13 11 10 41 41 H 1.08996 * 109.47183 * 60.00550 * 13 11 10 42 42 H 1.09003 * 109.47096 * 180.02562 * 13 11 10 43 43 H 1.00894 * 111.00199 * 330.37684 * 14 11 10 44 44 H 1.09004 * 109.47099 * 300.00076 * 15 14 11 45 45 H 1.09003 * 109.47053 * 59.99727 * 15 14 11 46 46 H 0.97004 * 120.00351 * 359.97438 * 18 16 15 47 47 H 0.96997 * 120.00430 * 180.02562 * 22 21 19 48 48 H 1.08994 * 109.47040 * 94.50497 * 28 27 5 49 49 H 1.08996 * 109.46834 * 214.49984 * 28 27 5 50 50 H 1.09001 * 109.46759 * 334.50107 * 28 27 5 51 51 H 1.08004 * 119.92768 * 180.29746 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2001 0.0000 4 6 3.5752 1.2071 0.0005 5 6 4.2762 -0.0001 0.0005 6 6 5.7547 -0.0001 0.0005 7 8 6.3624 -0.6064 0.8612 8 7 6.4287 0.6722 -0.9535 9 6 5.7007 1.3077 -2.0546 10 6 7.8896 0.7623 -0.8928 11 6 8.5042 -0.4988 -1.5034 12 1 8.2070 -1.3683 -0.9172 13 6 10.0293 -0.3770 -1.4978 14 7 8.0305 -0.6546 -2.8852 15 6 8.0495 -2.0660 -3.2922 16 6 7.5576 -2.1862 -4.7116 17 8 7.2245 -1.1936 -5.3240 18 7 7.4879 -3.3964 -5.3004 19 6 7.0409 -3.5057 -6.5919 20 1 6.7443 -2.6220 -7.1372 21 6 6.9696 -4.7535 -7.1991 22 7 7.3310 -5.8288 -6.5358 23 14 6.3599 -4.9024 -8.9586 24 1 7.5093 -4.7895 -9.8919 25 1 5.6994 -6.2195 -9.1438 26 1 5.3862 -3.8167 -9.2386 27 6 3.5754 -1.2069 -0.0054 28 6 4.3239 -2.5148 -0.0112 29 6 2.1956 -1.1998 0.0004 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 1.6523 2.1334 -0.0004 34 1 4.1117 2.1445 0.0001 35 1 5.0371 2.0753 -1.6563 36 1 6.4110 1.7637 -2.7444 37 1 5.1124 0.5570 -2.5824 38 1 8.2233 1.6364 -1.4519 39 1 8.2051 0.8536 0.1465 40 1 10.3265 0.4925 -2.0841 41 1 10.3808 -0.2614 -0.4725 42 1 10.4672 -1.2752 -1.9332 43 1 7.1097 -0.2580 -2.9987 44 1 9.0678 -2.4494 -3.2265 45 1 7.4008 -2.6430 -2.6331 46 1 7.7547 -4.1902 -4.8108 47 1 7.2816 -6.6997 -6.9598 48 1 4.4339 -2.8750 1.0116 49 1 3.7696 -3.2481 -0.5969 50 1 5.3096 -2.3673 -0.4525 51 1 1.6520 -2.1330 0.0006 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700776602.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:59 Heat of formation + Delta-G solvation = -71.118952 kcal Electronic energy + Delta-G solvation = -31197.604278 eV Core-core repulsion = 27095.673548 eV Total energy + Delta-G solvation = -4101.930729 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.70247 -40.29353 -39.74351 -38.08254 -36.16940 -35.78616 -34.46858 -33.36132 -33.14164 -32.19002 -28.89383 -28.33708 -28.25517 -28.07555 -26.59098 -25.63455 -23.42026 -22.53777 -21.60923 -21.16613 -20.36036 -19.94109 -18.45663 -17.94869 -17.64373 -17.19598 -16.73543 -16.65943 -16.35329 -16.10627 -15.85223 -15.65292 -15.44208 -15.11986 -14.84720 -14.55373 -14.35004 -14.23637 -14.10312 -13.93534 -13.82174 -13.58505 -13.49285 -13.41781 -13.37419 -12.94729 -12.91490 -12.83501 -12.78218 -12.62743 -12.50145 -12.46177 -12.42453 -12.12249 -11.98163 -11.95964 -11.52580 -10.99695 -10.38727 -10.04650 -9.88719 -9.75231 -9.57472 -9.44067 -8.48209 -5.97702 -0.01893 0.35600 1.37050 1.40867 1.49804 1.54058 1.91269 1.99950 2.27409 2.68662 2.85131 3.18238 3.37812 3.47913 3.73586 3.81993 3.86358 3.92399 4.10049 4.18334 4.23172 4.26126 4.34977 4.38438 4.38638 4.46154 4.51341 4.52589 4.56548 4.59772 4.67466 4.72988 4.76549 4.84634 4.85890 4.91873 4.92247 5.01494 5.13672 5.22817 5.28343 5.30447 5.38913 5.42573 5.50502 5.58224 5.83311 5.94537 6.03419 6.19627 6.36113 6.56156 6.97010 7.09219 7.51549 8.05715 8.69325 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008904 B = 0.003097 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3144.068224 B = 9039.552917 C =11000.721211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.065 4.065 3 C -0.130 4.130 4 C -0.080 4.080 5 C -0.158 4.158 6 C 0.561 3.439 7 O -0.566 6.566 8 N -0.610 5.610 9 C 0.071 3.929 10 C 0.117 3.883 11 C 0.066 3.934 12 H 0.029 0.971 13 C -0.131 4.131 14 N -0.667 5.667 15 C 0.065 3.935 16 C 0.441 3.559 17 O -0.616 6.616 18 N -0.572 5.572 19 C -0.334 4.334 20 H 0.082 0.918 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.995 3.005 24 H -0.270 1.270 25 H -0.271 1.271 26 H -0.270 1.270 27 C -0.054 4.054 28 C -0.113 4.113 29 C -0.136 4.136 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.157 0.843 34 H 0.146 0.854 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.046 0.954 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.048 0.952 43 H 0.343 0.657 44 H 0.101 0.899 45 H 0.045 0.955 46 H 0.394 0.606 47 H 0.278 0.722 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.039 0.961 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.370 13.838 16.185 23.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.065 4.065 3 C -0.148 4.148 4 C -0.098 4.098 5 C -0.161 4.161 6 C 0.350 3.650 7 O -0.445 6.445 8 N -0.342 5.342 9 C -0.071 4.071 10 C -0.005 4.005 11 C -0.045 4.045 12 H 0.048 0.952 13 C -0.190 4.190 14 N -0.302 5.302 15 C -0.068 4.068 16 C 0.228 3.772 17 O -0.503 6.503 18 N -0.209 5.209 19 C -0.463 4.463 20 H 0.100 0.900 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.818 3.182 24 H -0.196 1.196 25 H -0.196 1.196 26 H -0.195 1.195 27 C -0.055 4.055 28 C -0.170 4.170 29 C -0.154 4.154 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.175 0.825 34 H 0.164 0.836 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.065 0.935 38 H 0.130 0.870 39 H 0.109 0.891 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.067 0.933 43 H 0.164 0.836 44 H 0.119 0.881 45 H 0.063 0.937 46 H 0.228 0.772 47 H 0.087 0.913 48 H 0.097 0.903 49 H 0.097 0.903 50 H 0.058 0.942 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.650 14.139 15.885 22.958 hybrid contribution -0.508 -1.452 -0.206 1.552 sum -9.158 12.686 15.680 22.151 Atomic orbital electron populations 1.20909 0.88732 1.04156 1.03433 1.20472 0.97902 0.92623 0.95500 1.21308 0.93352 0.98916 1.01180 1.21405 0.94987 0.96409 0.96984 1.19776 0.91928 0.95322 1.09030 1.18686 0.87923 0.77568 0.80792 1.90746 1.70634 1.43869 1.39287 1.47949 1.07521 1.53416 1.25275 1.22125 0.98109 0.98140 0.88692 1.21869 0.77851 0.98197 1.02614 1.22020 0.97394 0.97802 0.87278 0.95248 1.21697 0.92319 1.02647 1.02312 1.60339 1.32996 1.14389 1.22428 1.21547 1.01953 0.91263 0.92055 1.20638 0.83529 0.83306 0.89728 1.90466 1.55140 1.37606 1.67048 1.41936 1.57965 1.07540 1.13445 1.19695 1.42032 0.94498 0.90086 0.90027 1.26091 0.97063 0.94046 1.04115 1.69682 1.47989 0.99121 1.39425 0.84903 0.78528 0.77891 0.76874 1.19585 1.19550 1.19491 1.20023 0.94581 0.94084 0.96819 1.20776 0.98870 0.94500 1.02807 1.21096 0.92356 0.99399 1.02514 0.90070 0.90693 0.89660 0.82502 0.83590 0.89008 0.88703 0.93503 0.86976 0.89124 0.91224 0.90588 0.93270 0.83565 0.88128 0.93713 0.77212 0.91268 0.90330 0.90307 0.94191 0.84236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 10.01 71.24 0.71 -0.50 16 2 C -0.06 -1.08 5.89 -19.81 -0.12 -1.20 16 3 C -0.13 -2.01 9.68 22.23 0.22 -1.79 16 4 C -0.08 -1.49 8.15 22.53 0.18 -1.30 16 5 C -0.16 -3.98 4.94 -20.09 -0.10 -4.08 16 6 C 0.56 15.97 5.97 86.79 0.52 16.49 16 7 O -0.57 -19.61 15.58 -3.90 -0.06 -19.67 16 8 N -0.61 -14.70 2.52 -850.20 -2.14 -16.84 16 9 C 0.07 1.46 7.74 127.77 0.99 2.45 16 10 C 0.12 2.65 4.95 86.38 0.43 3.08 16 11 C 0.07 1.80 2.87 44.91 0.13 1.93 16 12 H 0.03 0.94 7.58 -2.39 -0.02 0.92 16 13 C -0.13 -3.04 9.43 71.98 0.68 -2.36 16 14 N -0.67 -22.59 5.94 -495.56 -2.94 -25.53 16 15 C 0.06 2.48 5.96 85.56 0.51 2.99 16 16 C 0.44 21.80 7.82 87.66 0.69 22.49 16 17 O -0.62 -34.33 15.78 -3.07 -0.05 -34.37 16 18 N -0.57 -30.33 5.29 -306.99 -1.62 -31.95 16 19 C -0.33 -19.20 9.68 84.04 0.81 -18.39 16 20 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 21 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 22 N -0.92 -50.55 13.05 21.66 0.28 -50.27 16 23 Si 0.99 43.10 29.55 68.60 2.03 45.13 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 27 C -0.05 -1.39 5.91 -19.61 -0.12 -1.51 16 28 C -0.11 -3.06 9.27 71.24 0.66 -2.40 16 29 C -0.14 -2.81 9.36 22.23 0.21 -2.61 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.70 8.08 -2.39 -0.02 0.68 16 32 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 33 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 34 H 0.15 2.06 6.95 -2.91 -0.02 2.04 16 35 H 0.09 1.35 5.81 -2.38 -0.01 1.34 16 36 H 0.09 1.83 7.52 -2.39 -0.02 1.82 16 37 H 0.05 1.16 7.97 -2.39 -0.02 1.14 16 38 H 0.11 2.04 7.81 -2.39 -0.02 2.02 16 39 H 0.09 2.00 7.71 -2.39 -0.02 1.98 16 40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.05 1.23 7.55 -2.39 -0.02 1.21 16 43 H 0.34 11.96 5.27 -89.70 -0.47 11.49 16 44 H 0.10 3.57 7.54 -2.38 -0.02 3.55 16 45 H 0.04 1.68 8.05 -2.39 -0.02 1.66 16 46 H 0.39 20.16 7.90 -92.71 -0.73 19.43 16 47 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 48 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 49 H 0.08 1.92 8.12 -2.39 -0.02 1.90 16 50 H 0.04 1.27 6.62 -2.39 -0.02 1.25 16 51 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -73.65 414.85 2.11 -71.54 By element: Atomic # 1 Polarization: 49.21 SS G_CDS: -0.25 Total: 48.95 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 6.87 Total: 13.02 kcal Atomic # 7 Polarization: -118.17 SS G_CDS: -6.42 Total: -124.60 kcal Atomic # 8 Polarization: -53.94 SS G_CDS: -0.11 Total: -54.05 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -73.65 2.11 -71.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700776602.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.422 kcal (2) G-P(sol) polarization free energy of solvation -73.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds