Wall clock time and date at job start Wed Apr 1 2020 05:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50701 * 110.91569 * 2 1 4 4 O 1.21282 * 119.99610 * 236.03283 * 3 2 1 5 5 N 1.34777 * 119.99677 * 56.03165 * 3 2 1 6 6 C 1.46505 * 119.99305 * 180.02562 * 5 3 2 7 7 C 1.50703 * 109.46784 * 180.02562 * 6 5 3 8 8 C 1.29823 * 118.55903 * 94.99514 * 7 6 5 9 9 C 1.50140 * 123.28749 * 180.39016 * 8 7 6 10 10 N 1.46846 * 110.27590 * 342.93553 * 9 8 7 11 11 C 1.46899 * 111.00302 * 174.31282 * 10 9 8 12 12 C 1.50698 * 109.46987 * 66.03980 * 11 10 9 13 13 O 1.21293 * 120.00006 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99538 * 179.97438 * 12 11 10 15 15 C 1.37104 * 119.99773 * 179.72591 * 14 12 11 16 16 H 1.08002 * 119.99671 * 0.27660 * 15 14 12 17 17 C 1.38950 * 120.00030 * 180.27703 * 15 14 12 18 18 N 1.31414 * 119.99926 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99969 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47459 * 59.99812 * 19 17 15 21 21 H 1.48502 * 109.47317 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47211 * 300.00250 * 19 17 15 23 23 C 1.47239 * 110.20601 * 50.91850 * 10 9 8 24 24 C 1.50311 * 118.54939 * 275.02136 * 7 6 5 25 25 C 1.54635 * 111.06924 * 123.99006 * 2 1 3 26 26 C 1.51097 * 104.72602 * 142.67747 * 25 2 1 27 27 C 1.30525 * 111.10573 * 343.56356 * 26 25 2 28 28 C 1.51106 * 111.10209 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.46993 * 60.70086 * 1 2 3 30 30 H 1.09001 * 109.46912 * 180.70414 * 1 2 3 31 31 H 1.09001 * 109.46972 * 300.70395 * 1 2 3 32 32 H 0.96995 * 120.00499 * 0.02562 * 5 3 2 33 33 H 1.08995 * 109.47150 * 60.00098 * 6 5 3 34 34 H 1.09003 * 109.47146 * 299.99438 * 6 5 3 35 35 H 1.08001 * 118.35167 * 0.37934 * 8 7 6 36 36 H 1.08998 * 109.34082 * 222.68723 * 9 8 7 37 37 H 1.09003 * 109.33334 * 103.17518 * 9 8 7 38 38 H 1.09003 * 109.46477 * 306.04469 * 11 10 9 39 39 H 1.08993 * 109.47002 * 186.04796 * 11 10 9 40 40 H 0.97001 * 120.00485 * 0.02562 * 14 12 11 41 41 H 0.96999 * 119.99863 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.63934 * 50.89479 * 23 10 9 43 43 H 1.08999 * 109.63492 * 171.50188 * 23 10 9 44 44 H 1.09006 * 109.42858 * 283.57665 * 24 7 6 45 45 H 1.08990 * 109.43393 * 43.47402 * 24 7 6 46 46 H 1.09005 * 110.38996 * 261.49428 * 25 2 1 47 47 H 1.09004 * 110.38818 * 23.86863 * 25 2 1 48 48 H 1.08003 * 124.45124 * 163.58228 * 26 25 2 49 49 H 1.08002 * 124.44803 * 180.02562 * 27 26 25 50 50 H 1.08999 * 110.38175 * 257.62606 * 28 27 26 51 51 H 1.08995 * 110.48374 * 135.29546 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0681 1.4077 0.0000 4 8 2.8327 1.7646 -0.8711 5 7 1.6994 2.2699 0.9680 6 6 2.2220 3.6386 0.9676 7 6 1.6604 4.3910 2.1464 8 6 2.3603 4.4457 3.2385 9 6 1.9000 5.1579 4.4775 10 7 0.8058 6.0829 4.1559 11 6 0.2527 6.6883 5.3747 12 6 1.2932 7.5718 6.0134 13 8 2.3876 7.6863 5.5031 14 7 1.0072 8.2355 7.1510 15 6 1.9556 9.0349 7.7352 16 1 2.9304 9.1362 7.2813 17 6 1.6628 9.7146 8.9112 18 7 0.4769 9.5909 9.4637 19 14 2.9547 10.8043 9.7066 20 1 3.3475 11.8786 8.7596 21 1 2.3975 11.4119 10.9418 22 1 4.1466 9.9882 10.0512 23 6 -0.2414 5.3856 3.3910 24 6 0.3142 5.0447 2.0062 25 6 2.0860 -0.8067 1.1964 26 6 3.3085 -1.5081 0.6519 27 6 3.3080 -1.5080 -0.6534 28 6 2.0854 -0.8059 -1.1969 29 1 -0.3633 0.5029 -0.8962 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3633 0.5247 0.8836 32 1 1.0882 1.9844 1.6649 33 1 1.9300 4.1388 0.0443 34 1 3.3094 3.6123 1.0385 35 1 3.3218 3.9541 3.2566 36 1 2.7329 5.7180 4.9024 37 1 1.5513 4.4259 5.2060 38 1 -0.0343 5.9019 6.0729 39 1 -0.6231 7.2846 5.1190 40 1 0.1319 8.1442 7.5589 41 1 0.2723 10.0657 10.2844 42 1 -0.5232 4.4682 3.9079 43 1 -1.1120 6.0332 3.2874 44 1 0.4142 5.9588 1.4209 45 1 -0.3690 4.3630 1.4998 46 1 2.3635 -0.1366 2.0101 47 1 1.3506 -1.5354 1.5376 48 1 4.0811 -1.9517 1.2624 49 1 4.0802 -1.9515 -1.2646 50 1 1.3495 -1.5342 -1.5377 51 1 2.3608 -0.1359 -2.0113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701056348.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:54 Heat of formation + Delta-G solvation = -35.390006 kcal Electronic energy + Delta-G solvation = -29991.029943 eV Core-core repulsion = 25890.648537 eV Total energy + Delta-G solvation = -4100.381406 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.88840 -39.39469 -38.12426 -37.56434 -35.48763 -33.95846 -33.21988 -31.98223 -31.23564 -30.77916 -28.75440 -28.29274 -26.21359 -25.83004 -24.29892 -23.62349 -22.69797 -21.75969 -19.79498 -19.25488 -19.24294 -17.90519 -17.73646 -17.21339 -16.35819 -16.17758 -15.93463 -15.55828 -15.41233 -14.85861 -14.74481 -14.48675 -14.08817 -13.87135 -13.79379 -13.64595 -13.48590 -13.15764 -13.11849 -12.87462 -12.67444 -12.59101 -12.49340 -12.27856 -12.18024 -11.88799 -11.67436 -11.53627 -11.50754 -11.35646 -11.10885 -11.08379 -10.87519 -10.48592 -10.44277 -10.22151 -10.05518 -9.49429 -9.32519 -9.19826 -8.89255 -8.48890 -7.99529 -7.85952 -6.42814 -3.83621 1.93805 1.98441 2.41472 3.14587 3.19289 3.25159 3.29511 3.88109 3.96549 3.99623 4.20262 4.23266 4.35215 4.53220 4.66971 4.71184 4.87284 4.96701 5.00945 5.14914 5.20395 5.23287 5.26245 5.29951 5.32487 5.35631 5.39298 5.49243 5.50805 5.52634 5.58594 5.63268 5.66915 5.68951 5.75587 5.76827 5.89321 5.93594 6.08918 6.17737 6.22186 6.23051 6.31958 6.43284 6.53709 6.89875 7.27369 7.29946 7.32562 7.54067 8.00410 8.05082 8.60611 9.16998 9.53108 10.04958 10.74787 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025136 B = 0.001701 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.677199 B =16458.839673 C =16738.326490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 C 0.528 3.472 4 O -0.537 6.537 5 N -0.722 5.722 6 C 0.158 3.842 7 C -0.156 4.156 8 C -0.106 4.106 9 C 0.073 3.927 10 N -0.509 5.509 11 C 0.045 3.955 12 C 0.443 3.557 13 O -0.578 6.578 14 N -0.564 5.564 15 C -0.299 4.299 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.931 3.069 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.050 3.950 24 C -0.070 4.070 25 C -0.086 4.086 26 C -0.177 4.177 27 C -0.153 4.153 28 C -0.085 4.085 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.400 0.600 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.040 0.960 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.033 0.967 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.087 0.913 48 H 0.125 0.875 49 H 0.125 0.875 50 H 0.082 0.918 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.446 -22.082 -16.000 27.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.093 4.093 3 C 0.314 3.686 4 O -0.413 6.413 5 N -0.374 5.374 6 C 0.036 3.964 7 C -0.157 4.157 8 C -0.126 4.126 9 C -0.054 4.054 10 N -0.233 5.233 11 C -0.086 4.086 12 C 0.228 3.772 13 O -0.462 6.462 14 N -0.200 5.200 15 C -0.429 4.429 16 H 0.120 0.880 17 C -0.179 4.179 18 N -0.543 5.543 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.078 4.078 24 C -0.108 4.108 25 C -0.124 4.124 26 C -0.195 4.195 27 C -0.171 4.171 28 C -0.122 4.122 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.234 0.766 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.051 0.949 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.088 0.912 46 H 0.092 0.908 47 H 0.105 0.895 48 H 0.143 0.857 49 H 0.143 0.857 50 H 0.100 0.900 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.042 -21.235 -17.096 27.430 hybrid contribution -0.470 -0.216 1.661 1.740 sum -3.511 -21.451 -15.435 26.659 Atomic orbital electron populations 1.21785 0.91676 1.03061 1.02743 1.21648 0.97012 0.92382 0.98288 1.20251 0.80710 0.86518 0.81144 1.90689 1.35225 1.78302 1.37068 1.46095 1.49535 1.12340 1.29415 1.20328 0.98244 0.80590 0.97252 1.20842 0.98113 1.01756 0.94961 1.22345 0.98731 0.96893 0.94627 1.21251 0.96681 0.93431 0.94039 1.62030 1.08785 1.31953 1.20540 1.21906 0.97803 0.97880 0.91056 1.19736 0.89166 0.85112 0.83172 1.90483 1.24386 1.67182 1.64129 1.41861 1.15632 1.41086 1.21445 1.19650 0.96143 1.21687 1.05392 0.87956 1.25258 0.97277 0.98472 0.96918 1.69603 1.20568 1.43473 1.20691 0.85920 0.80148 0.79927 0.78233 1.19885 1.20993 1.19936 1.22217 0.94471 0.96978 0.94157 1.20391 0.93177 1.00107 0.97099 1.21439 0.96245 0.98152 0.96529 1.23204 0.98480 1.01471 0.96341 1.23247 0.98179 0.99486 0.96208 1.21362 0.95540 0.97852 0.97453 0.91707 0.91142 0.91841 0.76556 0.90971 0.91128 0.87203 0.86465 0.94209 0.93454 0.89190 0.77499 0.91833 0.94913 0.90422 0.90064 0.91240 0.90756 0.89486 0.85671 0.85704 0.89978 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 8.36 37.16 0.31 -0.41 16 2 C -0.09 -0.69 0.84 -153.95 -0.13 -0.82 16 3 C 0.53 5.61 6.51 -10.98 -0.07 5.54 16 4 O -0.54 -7.84 15.53 5.56 0.09 -7.76 16 5 N -0.72 -6.60 5.38 -61.47 -0.33 -6.93 16 6 C 0.16 1.70 5.72 -5.19 -0.03 1.67 16 7 C -0.16 -1.77 5.26 -100.92 -0.53 -2.30 16 8 C -0.11 -1.37 9.50 -35.97 -0.34 -1.71 16 9 C 0.07 1.14 5.22 -5.28 -0.03 1.11 16 10 N -0.51 -8.19 4.46 -237.58 -1.06 -9.25 16 11 C 0.04 0.77 5.44 -4.98 -0.03 0.75 16 12 C 0.44 10.22 7.54 -10.99 -0.08 10.13 16 13 O -0.58 -15.25 13.88 5.55 0.08 -15.18 16 14 N -0.56 -14.03 5.29 -10.96 -0.06 -14.09 16 15 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 16 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 17 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 18 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 19 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 C 0.05 0.60 5.59 -3.61 -0.02 0.58 16 24 C -0.07 -0.75 6.04 -28.04 -0.17 -0.92 16 25 C -0.09 -0.59 5.93 -26.83 -0.16 -0.75 16 26 C -0.18 -1.37 10.77 -35.70 -0.38 -1.76 16 27 C -0.15 -1.24 10.78 -35.69 -0.38 -1.63 16 28 C -0.08 -0.68 5.72 -26.84 -0.15 -0.83 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.29 8.12 -51.93 -0.42 -0.13 16 31 H 0.06 0.28 7.46 -51.93 -0.39 -0.11 16 32 H 0.40 2.85 7.74 -40.82 -0.32 2.54 16 33 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 34 H 0.07 0.84 7.85 -51.93 -0.41 0.43 16 35 H 0.11 1.30 7.81 -52.49 -0.41 0.89 16 36 H 0.12 2.26 5.98 -51.93 -0.31 1.95 16 37 H 0.04 0.58 8.06 -51.93 -0.42 0.16 16 38 H 0.05 0.74 8.06 -51.93 -0.42 0.32 16 39 H 0.09 1.40 7.94 -51.93 -0.41 0.99 16 40 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 41 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.03 0.36 8.08 -51.93 -0.42 -0.06 16 43 H 0.08 0.85 7.92 -51.93 -0.41 0.44 16 44 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.52 7.85 -51.93 -0.41 0.11 16 47 H 0.09 0.46 7.88 -51.93 -0.41 0.05 16 48 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 49 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 50 H 0.08 0.50 7.89 -51.93 -0.41 0.09 16 51 H 0.09 0.87 7.01 -51.93 -0.36 0.50 16 LS Contribution 410.52 15.07 6.19 6.19 Total: -1.00 -32.81 410.52 -10.13 -42.95 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -8.29 Total: 10.96 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -2.44 Total: 0.77 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.72 Total: -53.82 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.16 Total: -22.93 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.81 -10.13 -42.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701056348.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.555 kcal (2) G-P(sol) polarization free energy of solvation -32.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds