Wall clock time and date at job start Wed Apr 1 2020 05:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50701 * 110.91569 * 2 1 4 4 O 1.21282 * 119.99610 * 236.03283 * 3 2 1 5 5 N 1.34777 * 119.99677 * 56.03165 * 3 2 1 6 6 C 1.46505 * 119.99305 * 180.02562 * 5 3 2 7 7 C 1.50703 * 109.46784 * 180.02562 * 6 5 3 8 8 C 1.29823 * 118.55903 * 94.99514 * 7 6 5 9 9 C 1.50140 * 123.28749 * 180.39016 * 8 7 6 10 10 N 1.46846 * 110.27590 * 342.93553 * 9 8 7 11 11 C 1.46899 * 111.00302 * 174.31282 * 10 9 8 12 12 C 1.50698 * 109.46987 * 66.03980 * 11 10 9 13 13 O 1.21293 * 120.00006 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99538 * 179.97438 * 12 11 10 15 15 C 1.37104 * 119.99773 * 179.72591 * 14 12 11 16 16 H 1.08002 * 119.99671 * 0.27660 * 15 14 12 17 17 C 1.38950 * 120.00030 * 180.27703 * 15 14 12 18 18 N 1.31414 * 119.99926 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99969 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47459 * 59.99812 * 19 17 15 21 21 H 1.48502 * 109.47317 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47211 * 300.00250 * 19 17 15 23 23 C 1.47239 * 110.20601 * 50.91850 * 10 9 8 24 24 C 1.50311 * 118.54939 * 275.02136 * 7 6 5 25 25 C 1.54635 * 111.06924 * 123.99006 * 2 1 3 26 26 C 1.51097 * 104.72602 * 142.67747 * 25 2 1 27 27 C 1.30525 * 111.10573 * 343.56356 * 26 25 2 28 28 C 1.51106 * 111.10209 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.46993 * 60.70086 * 1 2 3 30 30 H 1.09001 * 109.46912 * 180.70414 * 1 2 3 31 31 H 1.09001 * 109.46972 * 300.70395 * 1 2 3 32 32 H 0.96995 * 120.00499 * 0.02562 * 5 3 2 33 33 H 1.08995 * 109.47150 * 60.00098 * 6 5 3 34 34 H 1.09003 * 109.47146 * 299.99438 * 6 5 3 35 35 H 1.08001 * 118.35167 * 0.37934 * 8 7 6 36 36 H 1.08998 * 109.34082 * 222.68723 * 9 8 7 37 37 H 1.09003 * 109.33334 * 103.17518 * 9 8 7 38 38 H 1.09003 * 109.46477 * 306.04469 * 11 10 9 39 39 H 1.08993 * 109.47002 * 186.04796 * 11 10 9 40 40 H 0.97001 * 120.00485 * 0.02562 * 14 12 11 41 41 H 0.96999 * 119.99863 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.63934 * 50.89479 * 23 10 9 43 43 H 1.08999 * 109.63492 * 171.50188 * 23 10 9 44 44 H 1.09006 * 109.42858 * 283.57665 * 24 7 6 45 45 H 1.08990 * 109.43393 * 43.47402 * 24 7 6 46 46 H 1.09005 * 110.38996 * 261.49428 * 25 2 1 47 47 H 1.09004 * 110.38818 * 23.86863 * 25 2 1 48 48 H 1.08003 * 124.45124 * 163.58228 * 26 25 2 49 49 H 1.08002 * 124.44803 * 180.02562 * 27 26 25 50 50 H 1.08999 * 110.38175 * 257.62606 * 28 27 26 51 51 H 1.08995 * 110.48374 * 135.29546 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0681 1.4077 0.0000 4 8 2.8327 1.7646 -0.8711 5 7 1.6994 2.2699 0.9680 6 6 2.2220 3.6386 0.9676 7 6 1.6604 4.3910 2.1464 8 6 2.3603 4.4457 3.2385 9 6 1.9000 5.1579 4.4775 10 7 0.8058 6.0829 4.1559 11 6 0.2527 6.6883 5.3747 12 6 1.2932 7.5718 6.0134 13 8 2.3876 7.6863 5.5031 14 7 1.0072 8.2355 7.1510 15 6 1.9556 9.0349 7.7352 16 1 2.9304 9.1362 7.2813 17 6 1.6628 9.7146 8.9112 18 7 0.4769 9.5909 9.4637 19 14 2.9547 10.8043 9.7066 20 1 3.3475 11.8786 8.7596 21 1 2.3975 11.4119 10.9418 22 1 4.1466 9.9882 10.0512 23 6 -0.2414 5.3856 3.3910 24 6 0.3142 5.0447 2.0062 25 6 2.0860 -0.8067 1.1964 26 6 3.3085 -1.5081 0.6519 27 6 3.3080 -1.5080 -0.6534 28 6 2.0854 -0.8059 -1.1969 29 1 -0.3633 0.5029 -0.8962 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3633 0.5247 0.8836 32 1 1.0882 1.9844 1.6649 33 1 1.9300 4.1388 0.0443 34 1 3.3094 3.6123 1.0385 35 1 3.3218 3.9541 3.2566 36 1 2.7329 5.7180 4.9024 37 1 1.5513 4.4259 5.2060 38 1 -0.0343 5.9019 6.0729 39 1 -0.6231 7.2846 5.1190 40 1 0.1319 8.1442 7.5589 41 1 0.2723 10.0657 10.2844 42 1 -0.5232 4.4682 3.9079 43 1 -1.1120 6.0332 3.2874 44 1 0.4142 5.9588 1.4209 45 1 -0.3690 4.3630 1.4998 46 1 2.3635 -0.1366 2.0101 47 1 1.3506 -1.5354 1.5376 48 1 4.0811 -1.9517 1.2624 49 1 4.0802 -1.9515 -1.2646 50 1 1.3495 -1.5342 -1.5377 51 1 2.3608 -0.1359 -2.0113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701056348.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:53 Heat of formation + Delta-G solvation = -57.959866 kcal Electronic energy + Delta-G solvation = -29992.008646 eV Core-core repulsion = 25890.648537 eV Total energy + Delta-G solvation = -4101.360108 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.63353 -40.69672 -39.45680 -38.56235 -36.58606 -35.85403 -34.24834 -33.24873 -32.59184 -31.78356 -29.77505 -29.08700 -27.49670 -26.48909 -25.84381 -24.69989 -23.58760 -22.75122 -21.04110 -20.55774 -19.87490 -19.83303 -18.63230 -18.03421 -17.76340 -17.18386 -16.88846 -16.66105 -16.44494 -16.33838 -15.86677 -15.75598 -15.45888 -15.30101 -15.16681 -14.67229 -14.14637 -13.99327 -13.96022 -13.75974 -13.68554 -13.57434 -13.49315 -13.26644 -13.15593 -13.07666 -12.95671 -12.89966 -12.48806 -12.42642 -12.20252 -12.12529 -12.09850 -12.07062 -11.63334 -11.45888 -11.44518 -10.91414 -10.26628 -10.15415 -9.99936 -9.90244 -9.78459 -9.16802 -8.45322 -5.93569 1.01510 1.35646 1.39826 1.41800 1.52329 1.60689 2.07531 2.29084 2.34846 2.79050 3.21559 3.40273 3.42584 3.56823 3.62531 3.77267 3.80949 4.09054 4.17991 4.28680 4.33160 4.36867 4.42064 4.44536 4.48595 4.54103 4.59128 4.63812 4.66949 4.70518 4.76428 4.79028 4.82101 4.94284 4.95902 5.00238 5.04207 5.08480 5.13427 5.19950 5.30426 5.36432 5.40174 5.43034 5.63057 5.86344 5.95343 5.96784 6.14172 6.22810 6.53405 6.62853 7.14860 7.22086 7.58768 8.15130 8.71726 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025136 B = 0.001701 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.677199 B =16458.839673 C =16738.326490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 C 0.524 3.476 4 O -0.583 6.583 5 N -0.709 5.709 6 C 0.165 3.835 7 C -0.133 4.133 8 C -0.125 4.125 9 C 0.079 3.921 10 N -0.532 5.532 11 C 0.058 3.942 12 C 0.440 3.560 13 O -0.616 6.616 14 N -0.574 5.574 15 C -0.332 4.332 16 H 0.077 0.923 17 C -0.013 4.013 18 N -0.920 5.920 19 Si 0.991 3.009 20 H -0.274 1.274 21 H -0.270 1.270 22 H -0.273 1.273 23 C 0.050 3.950 24 C -0.070 4.070 25 C -0.084 4.084 26 C -0.184 4.184 27 C -0.172 4.172 28 C -0.087 4.087 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.413 0.587 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.114 0.886 36 H 0.071 0.929 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.113 0.887 40 H 0.396 0.604 41 H 0.277 0.723 42 H 0.051 0.949 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.102 0.898 46 H 0.073 0.927 47 H 0.111 0.889 48 H 0.133 0.867 49 H 0.128 0.872 50 H 0.102 0.898 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.571 -23.525 -15.966 29.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.089 4.089 3 C 0.312 3.688 4 O -0.463 6.463 5 N -0.361 5.361 6 C 0.041 3.959 7 C -0.134 4.134 8 C -0.145 4.145 9 C -0.048 4.048 10 N -0.257 5.257 11 C -0.073 4.073 12 C 0.227 3.773 13 O -0.502 6.502 14 N -0.212 5.212 15 C -0.462 4.462 16 H 0.095 0.905 17 C -0.212 4.212 18 N -0.561 5.561 19 Si 0.815 3.185 20 H -0.199 1.199 21 H -0.195 1.195 22 H -0.198 1.198 23 C -0.077 4.077 24 C -0.107 4.107 25 C -0.121 4.121 26 C -0.202 4.202 27 C -0.190 4.190 28 C -0.124 4.124 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.250 0.750 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.132 0.868 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.131 0.869 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.111 0.889 44 H 0.093 0.907 45 H 0.120 0.880 46 H 0.092 0.908 47 H 0.129 0.871 48 H 0.151 0.849 49 H 0.146 0.854 50 H 0.120 0.880 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.215 -22.700 -17.042 28.861 hybrid contribution 0.213 0.199 1.563 1.590 sum -5.002 -22.502 -15.480 27.766 Atomic orbital electron populations 1.21819 0.89457 1.04504 1.03210 1.21675 0.98607 0.90125 0.98491 1.20862 0.79886 0.87697 0.80384 1.90674 1.37361 1.79322 1.38903 1.45942 1.49258 1.11458 1.29435 1.20154 0.97483 0.81471 0.96755 1.20913 0.98154 1.00264 0.94031 1.22202 0.99543 0.98280 0.94437 1.21011 0.95363 0.93027 0.95401 1.61970 1.10298 1.33293 1.20174 1.21775 0.96030 0.97662 0.91869 1.20845 0.89817 0.84441 0.82174 1.90468 1.26558 1.68231 1.64931 1.41928 1.15415 1.41563 1.22285 1.19599 0.96156 1.23762 1.06645 0.90451 1.25997 0.99245 0.99176 0.96814 1.69661 1.21581 1.43851 1.20974 0.85021 0.77816 0.78091 0.77601 1.19893 1.19468 1.19790 1.22353 0.93672 0.97702 0.93958 1.20471 0.93121 1.00443 0.96680 1.21496 0.96352 0.98381 0.95909 1.23462 0.99085 1.01229 0.96401 1.23423 0.98676 1.00144 0.96709 1.21395 0.96154 0.97870 0.96969 0.92152 0.89280 0.90458 0.74969 0.91203 0.92604 0.86846 0.91088 0.93354 0.91242 0.86917 0.76996 0.91346 0.93039 0.88897 0.90749 0.87993 0.90838 0.87095 0.84899 0.85371 0.87975 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.99 8.36 71.98 0.60 -0.39 16 2 C -0.09 -1.15 0.84 -51.82 -0.04 -1.19 16 3 C 0.52 10.61 6.51 87.66 0.57 11.18 16 4 O -0.58 -17.25 15.53 -3.04 -0.05 -17.30 16 5 N -0.71 -11.66 5.38 -466.77 -2.51 -14.18 16 6 C 0.16 3.36 5.72 85.63 0.49 3.85 16 7 C -0.13 -2.79 5.26 -15.40 -0.08 -2.87 16 8 C -0.13 -3.15 9.50 26.68 0.25 -2.90 16 9 C 0.08 2.48 5.22 85.39 0.45 2.92 16 10 N -0.53 -16.45 4.46 -905.56 -4.04 -20.49 16 11 C 0.06 1.91 5.44 85.56 0.47 2.38 16 12 C 0.44 20.64 7.54 87.66 0.66 21.30 16 13 O -0.62 -33.80 13.88 -3.07 -0.04 -33.84 16 14 N -0.57 -29.15 5.29 -306.98 -1.62 -30.77 16 15 C -0.33 -18.78 9.68 84.04 0.81 -17.97 16 16 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 17 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 18 N -0.92 -49.26 13.05 21.66 0.28 -48.97 16 19 Si 0.99 42.94 29.55 68.60 2.03 44.97 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 C 0.05 1.04 5.59 86.26 0.48 1.52 16 24 C -0.07 -1.29 6.04 29.75 0.18 -1.11 16 25 C -0.08 -0.95 5.93 30.53 0.18 -0.77 16 26 C -0.18 -2.61 10.77 26.26 0.28 -2.33 16 27 C -0.17 -2.68 10.78 26.26 0.28 -2.39 16 28 C -0.09 -1.31 5.72 30.53 0.17 -1.14 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.09 0.38 8.12 -2.39 -0.02 0.36 16 31 H 0.08 0.38 7.46 -2.39 -0.02 0.36 16 32 H 0.41 4.65 7.74 -92.71 -0.72 3.94 16 33 H 0.07 1.50 8.13 -2.39 -0.02 1.48 16 34 H 0.06 1.33 7.85 -2.39 -0.02 1.31 16 35 H 0.11 2.71 7.81 -2.91 -0.02 2.69 16 36 H 0.07 2.89 5.98 -2.39 -0.01 2.87 16 37 H 0.05 1.38 8.06 -2.39 -0.02 1.36 16 38 H 0.07 2.02 8.06 -2.39 -0.02 2.00 16 39 H 0.11 3.24 7.94 -2.39 -0.02 3.22 16 40 H 0.40 18.99 7.90 -92.71 -0.73 18.26 16 41 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 42 H 0.05 0.91 8.08 -2.39 -0.02 0.89 16 43 H 0.09 1.68 7.92 -2.39 -0.02 1.66 16 44 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 45 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.07 0.86 7.85 -2.38 -0.02 0.84 16 47 H 0.11 0.75 7.88 -2.38 -0.02 0.74 16 48 H 0.13 1.60 8.06 -2.91 -0.02 1.58 16 49 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 50 H 0.10 1.07 7.89 -2.39 -0.02 1.05 16 51 H 0.06 1.29 7.01 -2.39 -0.02 1.28 16 Total: -1.00 -74.06 410.52 -0.23 -74.29 By element: Atomic # 1 Polarization: 36.89 SS G_CDS: -0.51 Total: 36.39 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 6.23 Total: 9.90 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -7.89 Total: -114.41 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: -0.09 Total: -51.13 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -74.06 -0.23 -74.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701056348.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.329 kcal (2) G-P(sol) polarization free energy of solvation -74.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds