Wall clock time and date at job start Wed Apr 1 2020 05:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50712 * 1 3 3 C 1.38256 * 119.99686 * 2 1 4 4 C 1.38216 * 119.99676 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99546 * 359.76954 * 4 3 2 6 6 C 1.38213 * 120.00231 * 0.46283 * 5 4 3 7 7 C 1.50701 * 119.99878 * 179.78860 * 6 5 4 8 8 C 1.50703 * 109.47064 * 269.72422 * 7 6 5 9 9 O 1.21278 * 119.99985 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99944 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99872 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46840 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 H 1.08994 * 109.47704 * 54.99481 * 13 12 11 15 15 C 1.53000 * 109.47194 * 175.00077 * 13 12 11 16 16 N 1.46909 * 109.46754 * 294.99510 * 13 12 11 17 17 C 1.46902 * 110.99504 * 155.00241 * 16 13 12 18 18 C 1.50702 * 109.46730 * 180.02562 * 17 16 13 19 19 O 1.21295 * 119.99801 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00164 * 179.97438 * 18 17 16 21 21 C 1.37102 * 120.00303 * 179.97438 * 20 18 17 22 22 H 1.07995 * 119.99853 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99926 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00356 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99954 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47077 * 89.99795 * 25 23 21 27 27 H 1.48497 * 109.47095 * 210.00418 * 25 23 21 28 28 H 1.48502 * 109.46902 * 330.00407 * 25 23 21 29 29 C 1.38205 * 119.99778 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47077 * 270.02408 * 1 2 3 31 31 H 1.09000 * 109.46444 * 30.01999 * 1 2 3 32 32 H 1.08990 * 109.47251 * 150.01965 * 1 2 3 33 33 H 1.07994 * 120.00721 * 359.97438 * 3 2 1 34 34 H 1.07993 * 119.99959 * 179.97438 * 4 3 2 35 35 H 1.08008 * 119.99998 * 180.25154 * 5 4 3 36 36 H 1.09002 * 109.47060 * 149.72458 * 7 6 5 37 37 H 1.09001 * 109.47380 * 29.72371 * 7 6 5 38 38 H 0.97000 * 119.99708 * 359.97438 * 10 8 7 39 39 H 1.09002 * 109.47391 * 59.99686 * 11 10 8 40 40 H 1.09001 * 109.46813 * 299.99742 * 11 10 8 41 41 H 1.09001 * 109.47194 * 299.99493 * 12 11 10 42 42 H 1.08992 * 109.47399 * 59.99666 * 12 11 10 43 43 H 1.09004 * 109.47242 * 59.99175 * 15 13 12 44 44 H 1.09000 * 109.47237 * 179.97438 * 15 13 12 45 45 H 1.09002 * 109.46818 * 299.99696 * 15 13 12 46 46 H 1.00899 * 110.99745 * 31.05175 * 16 13 12 47 47 H 1.08996 * 109.47071 * 299.99790 * 17 16 13 48 48 H 1.08993 * 109.47443 * 60.00317 * 17 16 13 49 49 H 0.97003 * 120.00110 * 0.02562 * 20 18 17 50 50 H 0.96996 * 119.99962 * 179.97438 * 24 23 21 51 51 H 1.08005 * 119.99814 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0000 0.0059 6 6 3.5806 -1.1970 0.0010 7 6 4.3341 -2.5021 0.0021 8 6 4.5853 -2.9382 -1.4185 9 8 4.1917 -2.2562 -2.3408 10 7 5.2474 -4.0862 -1.6638 11 6 5.4921 -4.5099 -3.0447 12 6 6.2559 -5.8356 -3.0436 13 6 6.5119 -6.2778 -4.4858 14 1 7.0249 -5.4811 -5.0245 15 6 7.3821 -7.5363 -4.4866 16 7 5.2309 -6.5679 -5.1438 17 6 5.3409 -6.4147 -6.6007 18 6 4.0104 -6.7191 -7.2396 19 8 3.0636 -7.0323 -6.5491 20 7 3.8722 -6.6423 -8.5780 21 6 2.6619 -6.9197 -9.1593 22 1 1.8191 -7.1994 -8.5447 23 6 2.5194 -6.8400 -10.5392 24 7 3.5448 -6.4992 -11.2871 25 14 0.8702 -7.2173 -11.3312 26 1 0.0696 -5.9702 -11.4256 27 1 1.0894 -7.7692 -12.6922 28 1 0.1405 -8.2124 -10.5050 29 6 2.1981 -1.1969 0.0005 30 1 -0.3633 0.0004 1.0277 31 1 -0.3632 0.8898 -0.5142 32 1 -0.3633 -0.8901 -0.5135 33 1 1.6584 2.1327 -0.0004 34 1 4.1205 2.1326 0.0001 35 1 5.3518 -0.0001 0.0104 36 1 3.7450 -3.2613 0.5165 37 1 5.2865 -2.3714 0.5158 38 1 5.5625 -4.6315 -0.9261 39 1 6.0818 -3.7508 -3.5587 40 1 4.5398 -4.6400 -3.5589 41 1 7.2081 -5.7059 -2.5293 42 1 5.6658 -6.5945 -2.5299 43 1 6.8691 -8.3330 -3.9478 44 1 7.5641 -7.8515 -5.5140 45 1 8.3325 -7.3210 -3.9983 46 1 4.4944 -5.9860 -4.7736 47 1 5.6315 -5.3912 -6.8374 48 1 6.0939 -7.1039 -6.9827 49 1 4.6293 -6.3914 -9.1302 50 1 3.4453 -6.4439 -12.2503 51 1 1.6580 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713416905.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:13 Heat of formation + Delta-G solvation = -65.625412 kcal Electronic energy + Delta-G solvation = -29027.860305 eV Core-core repulsion = 24926.167793 eV Total energy + Delta-G solvation = -4101.692511 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.30319 -39.15818 -38.43096 -37.14975 -34.81380 -33.86200 -33.75825 -32.29192 -31.55255 -31.05904 -29.42731 -27.80059 -27.01549 -26.34959 -24.14337 -23.28551 -22.35252 -21.40896 -20.66235 -20.01271 -19.21257 -17.86477 -17.26888 -16.81399 -16.42001 -16.21259 -15.93605 -15.62998 -15.28285 -14.97307 -14.77500 -14.46120 -14.15988 -13.94552 -13.76886 -13.65130 -13.63098 -13.37393 -13.18750 -13.09034 -12.61791 -12.48990 -12.18843 -12.14212 -12.10983 -11.85318 -11.67602 -11.54020 -11.35728 -11.27200 -11.22096 -11.19438 -11.03549 -10.76424 -10.36484 -10.18362 -10.04716 -9.47379 -9.25590 -8.98532 -8.79237 -8.41062 -8.04571 -7.92190 -6.38164 -3.78781 1.11180 1.20828 2.48316 2.94697 3.20788 3.28971 3.35162 3.59656 3.94873 4.11819 4.31902 4.34660 4.51312 4.58221 4.67473 4.71869 4.87945 4.89115 4.92300 4.97369 5.05336 5.14974 5.18451 5.26632 5.28659 5.35921 5.39451 5.42417 5.44628 5.56061 5.59641 5.71292 5.82213 5.83707 5.86120 5.91195 5.92626 6.02344 6.07190 6.22300 6.25012 6.27502 6.33296 6.37251 6.39980 6.80662 7.25596 7.28723 7.58753 7.68795 8.06160 8.10140 8.65140 9.21571 9.58222 10.09809 10.79678 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008939 B = 0.001978 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.458378 B =14150.058756 C =16564.127011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.122 4.122 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.063 4.063 7 C -0.102 4.102 8 C 0.510 3.490 9 O -0.525 6.525 10 N -0.731 5.731 11 C 0.113 3.887 12 C -0.132 4.132 13 C 0.086 3.914 14 H 0.044 0.956 15 C -0.139 4.139 16 N -0.666 5.666 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C -0.104 4.104 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.400 0.600 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.052 0.948 46 H 0.349 0.651 47 H 0.043 0.957 48 H 0.086 0.914 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.072 10.565 25.961 28.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.140 4.140 4 C -0.134 4.134 5 C -0.130 4.130 6 C -0.063 4.063 7 C -0.142 4.142 8 C 0.295 3.705 9 O -0.400 6.400 10 N -0.383 5.383 11 C -0.011 4.011 12 C -0.170 4.170 13 C -0.025 4.025 14 H 0.062 0.938 15 C -0.197 4.197 16 N -0.301 5.301 17 C -0.083 4.083 18 C 0.227 3.773 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.123 4.123 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.234 0.766 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.171 0.829 47 H 0.061 0.939 48 H 0.104 0.896 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.242 10.195 25.505 28.167 hybrid contribution -0.001 0.655 -0.736 0.985 sum 6.241 10.850 24.768 27.752 Atomic orbital electron populations 1.20803 0.91145 1.03063 1.02182 1.19889 0.96125 0.93086 0.99435 1.21025 0.94299 0.97468 1.01168 1.21068 0.94320 0.97845 1.00159 1.20934 0.99560 0.92034 1.00477 1.19225 0.93531 0.93539 1.00048 1.20675 1.02249 0.96458 0.94779 1.20557 0.77794 0.80780 0.91323 1.90778 1.49595 1.53474 1.46157 1.45978 1.59068 1.24280 1.09017 1.21472 1.00858 0.95999 0.82781 1.21974 1.00849 0.96217 0.97927 1.21460 0.91455 0.96746 0.92847 0.93762 1.21785 0.97956 0.97616 1.02327 1.60215 1.05278 1.61401 1.03194 1.21724 0.97937 0.99883 0.88744 1.19821 0.89571 0.84814 0.83140 1.90520 1.41120 1.52813 1.62287 1.41864 1.12887 1.60365 1.04976 1.19701 0.89509 1.43180 0.90381 0.87946 1.25262 0.99103 0.97396 0.96252 1.69613 1.30410 1.48277 1.06079 0.85856 0.81482 0.78762 0.78183 1.20426 1.20936 1.19414 1.20867 0.93357 0.97740 1.00292 0.91231 0.91504 0.91365 0.86216 0.86100 0.86378 0.87869 0.87967 0.76628 0.91545 0.90960 0.90676 0.90046 0.91855 0.92396 0.92901 0.82948 0.93860 0.89577 0.77469 0.91909 0.86204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 10.01 36.01 0.36 -0.53 16 2 C -0.09 -0.85 5.88 -104.62 -0.62 -1.46 16 3 C -0.12 -1.14 9.70 -39.58 -0.38 -1.53 16 4 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 5 C -0.11 -1.09 9.70 -39.58 -0.38 -1.47 16 6 C -0.06 -0.63 4.37 -104.63 -0.46 -1.09 16 7 C -0.10 -0.77 5.83 -29.03 -0.17 -0.94 16 8 C 0.51 5.70 7.82 -10.98 -0.09 5.62 16 9 O -0.53 -8.63 16.03 5.56 0.09 -8.54 16 10 N -0.73 -6.52 5.56 -60.29 -0.33 -6.85 16 11 C 0.11 1.23 5.50 -4.04 -0.02 1.21 16 12 C -0.13 -1.21 4.92 -26.73 -0.13 -1.34 16 13 C 0.09 1.01 2.65 -67.71 -0.18 0.83 16 14 H 0.04 0.52 7.80 -51.93 -0.40 0.11 16 15 C -0.14 -1.50 9.41 37.16 0.35 -1.15 16 16 N -0.67 -10.82 5.93 -107.99 -0.64 -11.46 16 17 C 0.05 0.91 5.97 -4.97 -0.03 0.88 16 18 C 0.44 10.75 7.82 -10.99 -0.09 10.66 16 19 O -0.58 -16.29 15.78 5.54 0.09 -16.21 16 20 N -0.56 -14.72 5.29 -10.96 -0.06 -14.78 16 21 C -0.30 -8.53 9.68 -14.93 -0.14 -8.67 16 22 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -25.05 13.05 55.50 0.72 -24.32 16 25 Si 0.93 21.54 29.55 -169.99 -5.02 16.51 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 29 C -0.10 -1.09 9.36 -39.59 -0.37 -1.46 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 36 H 0.10 0.56 8.09 -51.93 -0.42 0.14 16 37 H 0.10 0.50 8.08 -51.93 -0.42 0.08 16 38 H 0.40 2.17 8.47 -40.82 -0.35 1.82 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.07 1.00 6.43 -51.93 -0.33 0.66 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 45 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.35 6.02 6.17 -39.29 -0.24 5.77 16 47 H 0.04 0.73 8.05 -51.93 -0.42 0.31 16 48 H 0.09 1.44 7.43 -51.93 -0.39 1.06 16 49 H 0.39 9.76 7.90 -40.82 -0.32 9.44 16 50 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 51 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 425.29 15.07 6.41 6.41 Total: -1.00 -36.08 425.29 -9.85 -45.93 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -8.26 Total: 14.72 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -2.84 Total: -1.42 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.31 Total: -57.41 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: 0.18 Total: -24.74 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -36.08 -9.85 -45.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713416905.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.699 kcal (2) G-P(sol) polarization free energy of solvation -36.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds