Wall clock time and date at job start Wed Apr 1 2020 05:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38262 * 119.99658 * 2 1 4 4 C 1.38208 * 119.99554 * 180.02562 * 3 2 1 5 5 C 1.38255 * 120.00357 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00225 * 179.70539 * 5 4 3 7 7 C 1.50690 * 109.47286 * 89.99928 * 6 5 4 8 8 O 1.21284 * 120.00243 * 0.02562 * 7 6 5 9 9 N 1.34785 * 119.99981 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99813 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.46903 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47066 * 65.00077 * 11 10 9 13 13 C 1.52994 * 109.46927 * 185.00518 * 11 10 9 14 14 N 1.46902 * 109.46887 * 305.00147 * 11 10 9 15 15 C 1.46899 * 110.99943 * 155.00092 * 14 11 10 16 16 C 1.50696 * 109.47270 * 179.97438 * 15 14 11 17 17 O 1.21294 * 120.00077 * 0.02562 * 16 15 14 18 18 N 1.34785 * 120.00301 * 179.97438 * 16 15 14 19 19 C 1.37093 * 120.00109 * 179.97438 * 18 16 15 20 20 H 1.08008 * 120.00007 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99939 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99650 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99954 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47246 * 60.00294 * 23 21 19 25 25 H 1.48506 * 109.47096 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47590 * 300.00383 * 23 21 19 27 27 C 1.38220 * 119.99681 * 359.97438 * 5 4 3 28 28 C 1.38205 * 119.99867 * 180.02562 * 2 1 3 29 29 C 1.50701 * 120.00210 * 359.97438 * 28 2 1 30 30 H 1.09006 * 109.46624 * 90.00384 * 1 2 3 31 31 H 1.08990 * 109.47123 * 210.00160 * 1 2 3 32 32 H 1.08997 * 109.47214 * 330.00730 * 1 2 3 33 33 H 1.07992 * 119.99989 * 359.97438 * 3 2 1 34 34 H 1.08000 * 120.00313 * 179.97438 * 4 3 2 35 35 H 1.09003 * 109.46871 * 209.99873 * 6 5 4 36 36 H 1.09001 * 109.47017 * 329.99211 * 6 5 4 37 37 H 0.97001 * 119.99796 * 0.02562 * 9 7 6 38 38 H 1.08994 * 109.47742 * 300.00123 * 10 9 7 39 39 H 1.09001 * 109.47023 * 60.00724 * 10 9 7 40 40 H 1.08997 * 109.47607 * 59.99891 * 13 11 10 41 41 H 1.09003 * 109.46875 * 180.02562 * 13 11 10 42 42 H 1.09001 * 109.47521 * 299.99760 * 13 11 10 43 43 H 1.00902 * 111.00052 * 31.04738 * 14 11 10 44 44 H 1.09001 * 109.47020 * 300.00229 * 15 14 11 45 45 H 1.09000 * 109.46932 * 60.00251 * 15 14 11 46 46 H 0.97001 * 119.99238 * 0.02562 * 18 16 15 47 47 H 0.96999 * 119.99858 * 179.97438 * 22 21 19 48 48 H 1.08002 * 119.99604 * 180.02562 * 27 5 4 49 49 H 1.09009 * 109.46829 * 90.00413 * 29 28 2 50 50 H 1.09000 * 109.47383 * 209.99923 * 29 28 2 51 51 H 1.08993 * 109.47206 * 330.00304 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 5.7787 0.0001 -0.0078 7 6 6.2879 0.0041 1.4104 8 8 5.5043 0.0062 2.3361 9 7 7.6143 0.0043 1.6503 10 6 8.1093 0.0087 3.0291 11 6 9.6393 0.0086 3.0216 12 1 10.0006 0.9385 2.5825 13 6 10.1562 -0.1127 4.4565 14 7 10.1250 -1.1286 2.2285 15 6 11.4697 -0.8652 1.6992 16 6 11.9338 -2.0511 0.8936 17 8 11.2147 -3.0204 0.7718 18 7 13.1474 -2.0346 0.3074 19 6 13.5697 -3.1137 -0.4250 20 1 12.9297 -3.9771 -0.5327 21 6 14.8206 -3.0964 -1.0297 22 7 15.5990 -2.0457 -0.8990 23 14 15.3957 -4.5665 -2.0283 24 1 14.4560 -4.7980 -3.1547 25 1 16.7549 -4.2999 -2.5639 26 1 15.4336 -5.7706 -1.1600 27 6 3.5806 -1.1969 0.0005 28 6 2.1981 -1.1969 -0.0005 29 6 1.4446 -2.5020 -0.0005 30 1 -0.3633 -0.0001 -1.0278 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5137 33 1 1.6583 2.1326 -0.0004 34 1 4.1205 2.1327 -0.0010 35 1 6.1396 -0.8914 -0.5209 36 1 6.1395 0.8886 -0.5260 37 1 8.2410 0.0022 0.9099 38 1 7.7489 0.9005 3.5417 39 1 7.7481 -0.8794 3.5476 40 1 9.7950 -1.0426 4.8955 41 1 11.2462 -0.1123 4.4512 42 1 9.7959 0.7310 5.0450 43 1 9.4809 -1.3519 1.4845 44 1 11.4428 0.0191 1.0624 45 1 12.1591 -0.6963 2.5265 46 1 13.7222 -1.2593 0.4046 47 1 16.4724 -2.0337 -1.3208 48 1 4.1207 -2.1322 0.0010 49 1 1.2626 -2.8165 -1.0283 50 1 2.0339 -3.2618 0.5129 51 1 0.4924 -2.3718 0.5136 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714300379.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:44 Heat of formation + Delta-G solvation = -62.167563 kcal Electronic energy + Delta-G solvation = -29262.243164 eV Core-core repulsion = 25160.700596 eV Total energy + Delta-G solvation = -4101.542568 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.34784 -39.37348 -38.42143 -36.99412 -34.41221 -34.13651 -33.73149 -32.44366 -31.37843 -30.96829 -29.94155 -27.53552 -26.81737 -26.25384 -24.95211 -23.92878 -22.30094 -21.05088 -20.68146 -19.98333 -19.32606 -17.96833 -17.35898 -16.58341 -16.35076 -16.08304 -15.81926 -15.49405 -15.29444 -14.91157 -14.73973 -14.51960 -14.47944 -13.93687 -13.87903 -13.44656 -13.33574 -13.15021 -13.03335 -12.98524 -12.80151 -12.63279 -12.55030 -12.15971 -11.97981 -11.91761 -11.84111 -11.74941 -11.67530 -11.44259 -11.16135 -11.08337 -11.05392 -10.87688 -10.47009 -10.24720 -10.00822 -9.53773 -9.20857 -8.87624 -8.58895 -8.51468 -8.16475 -8.00226 -6.45309 -3.86293 1.14065 1.26289 2.54010 3.00803 3.17486 3.23670 3.27904 3.61075 3.85675 4.01808 4.25286 4.41443 4.55031 4.61676 4.66246 4.80038 4.81762 4.87392 4.95511 5.05547 5.16006 5.18416 5.21677 5.24371 5.27317 5.29619 5.36956 5.43147 5.52051 5.54353 5.58833 5.65119 5.65875 5.74177 5.75073 5.92632 5.95781 5.96541 6.01692 6.16407 6.23643 6.26964 6.35216 6.41995 6.48552 6.86844 7.12016 7.30950 7.51548 7.54302 8.01997 8.09669 8.57004 9.13974 9.49886 10.01159 10.72173 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012644 B = 0.001837 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.024146 B =15235.551797 C =16680.156349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.090 4.090 3 C -0.117 4.117 4 C -0.107 4.107 5 C -0.065 4.065 6 C -0.105 4.105 7 C 0.517 3.483 8 O -0.532 6.532 9 N -0.733 5.733 10 C 0.119 3.881 11 C 0.072 3.928 12 H 0.048 0.952 13 C -0.138 4.138 14 N -0.664 5.664 15 C 0.049 3.951 16 C 0.439 3.561 17 O -0.583 6.583 18 N -0.562 5.562 19 C -0.301 4.301 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C -0.100 4.100 28 C -0.086 4.086 29 C -0.117 4.117 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.399 0.601 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.347 0.653 44 H 0.043 0.957 45 H 0.088 0.912 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.121 0.879 49 H 0.069 0.931 50 H 0.066 0.934 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.007 9.725 2.327 25.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.090 4.090 3 C -0.135 4.135 4 C -0.125 4.125 5 C -0.065 4.065 6 C -0.145 4.145 7 C 0.303 3.697 8 O -0.407 6.407 9 N -0.387 5.387 10 C -0.005 4.005 11 C -0.039 4.039 12 H 0.066 0.934 13 C -0.197 4.197 14 N -0.299 5.299 15 C -0.083 4.083 16 C 0.224 3.776 17 O -0.467 6.467 18 N -0.199 5.199 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.118 4.118 28 C -0.086 4.086 29 C -0.174 4.174 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.234 0.766 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.168 0.832 44 H 0.061 0.939 45 H 0.106 0.894 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.139 0.861 49 H 0.088 0.912 50 H 0.085 0.915 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.636 8.756 3.391 25.433 hybrid contribution 1.157 0.513 -1.483 1.949 sum -22.480 9.269 1.908 24.390 Atomic orbital electron populations 1.20844 0.91472 1.02766 1.02164 1.19735 0.95856 0.92722 1.00735 1.20919 0.94019 0.97338 1.01219 1.20908 0.94217 0.97245 1.00174 1.19206 0.93428 0.93545 1.00342 1.20702 0.93381 1.05628 0.94807 1.20498 0.81932 0.75911 0.91325 1.90727 1.55495 1.48602 1.45914 1.46081 1.07216 1.76137 1.09240 1.21589 0.93038 1.02982 0.82860 1.21809 0.92660 0.92866 0.96534 0.93362 1.21736 1.01661 1.02077 0.94182 1.60119 1.03302 1.37415 1.29076 1.21755 0.91644 0.96508 0.98417 1.19792 0.83756 0.89268 0.84781 1.90531 1.55594 1.35711 1.64892 1.41857 1.14533 1.18311 1.45158 1.19655 1.00482 0.96745 1.26149 0.87960 1.25265 0.95976 0.98359 0.98282 1.69602 1.10712 1.29082 1.44830 0.85914 0.77596 0.80940 0.79752 1.19906 1.20965 1.19872 1.20870 0.93519 0.97518 0.99908 1.19693 0.93549 0.94900 1.00508 1.20856 1.00093 0.94153 1.02255 0.91296 0.91212 0.91753 0.86223 0.86369 0.87543 0.87894 0.76568 0.90928 0.90375 0.91511 0.91978 0.92509 0.83155 0.93859 0.89407 0.77465 0.91794 0.86107 0.91203 0.91522 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.60 36.01 0.35 -0.45 16 2 C -0.09 -0.88 5.88 -104.62 -0.62 -1.49 16 3 C -0.12 -1.14 9.70 -39.58 -0.38 -1.52 16 4 C -0.11 -1.12 9.70 -39.59 -0.38 -1.50 16 5 C -0.06 -0.71 4.37 -104.62 -0.46 -1.17 16 6 C -0.11 -0.99 5.83 -29.04 -0.17 -1.16 16 7 C 0.52 6.27 7.82 -10.99 -0.09 6.18 16 8 O -0.53 -8.48 16.03 5.55 0.09 -8.39 16 9 N -0.73 -7.93 4.99 -60.30 -0.30 -8.23 16 10 C 0.12 1.35 5.31 -4.04 -0.02 1.33 16 11 C 0.07 0.82 2.81 -67.71 -0.19 0.63 16 12 H 0.05 0.51 7.80 -51.93 -0.40 0.10 16 13 C -0.14 -1.49 9.41 37.15 0.35 -1.14 16 14 N -0.66 -10.03 5.93 -107.99 -0.64 -10.67 16 15 C 0.05 0.82 5.96 -4.98 -0.03 0.79 16 16 C 0.44 10.00 7.82 -10.98 -0.09 9.92 16 17 O -0.58 -15.43 15.78 5.55 0.09 -15.34 16 18 N -0.56 -13.86 5.29 -10.96 -0.06 -13.92 16 19 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 20 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.07 13.05 55.50 0.72 -23.34 16 23 Si 0.93 20.76 29.55 -169.99 -5.02 15.73 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 C -0.10 -1.11 9.36 -39.58 -0.37 -1.48 16 28 C -0.09 -0.89 5.88 -104.63 -0.62 -1.50 16 29 C -0.12 -0.91 9.60 36.01 0.35 -0.57 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.43 5.95 -51.93 -0.31 0.12 16 32 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 33 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.11 0.87 8.08 -51.93 -0.42 0.45 16 36 H 0.10 0.73 8.09 -51.93 -0.42 0.31 16 37 H 0.40 3.77 7.37 -40.82 -0.30 3.47 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.35 5.35 6.41 -39.29 -0.25 5.10 16 44 H 0.04 0.63 8.06 -51.93 -0.42 0.21 16 45 H 0.09 1.36 7.44 -51.93 -0.39 0.98 16 46 H 0.39 9.23 7.90 -40.82 -0.32 8.90 16 47 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 48 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 49 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 50 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 51 H 0.07 0.46 5.95 -51.93 -0.31 0.15 16 LS Contribution 421.35 15.07 6.35 6.35 Total: -1.00 -33.85 421.35 -9.46 -43.31 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -8.08 Total: 15.51 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -2.61 Total: -1.01 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.27 Total: -56.16 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: 0.18 Total: -23.73 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -33.85 -9.46 -43.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714300379.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.856 kcal (2) G-P(sol) polarization free energy of solvation -33.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds