Wall clock time and date at job start Wed Apr 1 2020 05:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38262 * 119.99658 * 2 1 4 4 C 1.38208 * 119.99554 * 180.02562 * 3 2 1 5 5 C 1.38255 * 120.00357 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00225 * 179.70539 * 5 4 3 7 7 C 1.50690 * 109.47286 * 89.99928 * 6 5 4 8 8 O 1.21284 * 120.00243 * 0.02562 * 7 6 5 9 9 N 1.34785 * 119.99981 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99813 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.46903 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47066 * 65.00077 * 11 10 9 13 13 C 1.52994 * 109.46927 * 185.00518 * 11 10 9 14 14 N 1.46902 * 109.46887 * 305.00147 * 11 10 9 15 15 C 1.46899 * 110.99943 * 155.00092 * 14 11 10 16 16 C 1.50696 * 109.47270 * 179.97438 * 15 14 11 17 17 O 1.21294 * 120.00077 * 0.02562 * 16 15 14 18 18 N 1.34785 * 120.00301 * 179.97438 * 16 15 14 19 19 C 1.37093 * 120.00109 * 179.97438 * 18 16 15 20 20 H 1.08008 * 120.00007 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99939 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99650 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99954 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47246 * 60.00294 * 23 21 19 25 25 H 1.48506 * 109.47096 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47590 * 300.00383 * 23 21 19 27 27 C 1.38220 * 119.99681 * 359.97438 * 5 4 3 28 28 C 1.38205 * 119.99867 * 180.02562 * 2 1 3 29 29 C 1.50701 * 120.00210 * 359.97438 * 28 2 1 30 30 H 1.09006 * 109.46624 * 90.00384 * 1 2 3 31 31 H 1.08990 * 109.47123 * 210.00160 * 1 2 3 32 32 H 1.08997 * 109.47214 * 330.00730 * 1 2 3 33 33 H 1.07992 * 119.99989 * 359.97438 * 3 2 1 34 34 H 1.08000 * 120.00313 * 179.97438 * 4 3 2 35 35 H 1.09003 * 109.46871 * 209.99873 * 6 5 4 36 36 H 1.09001 * 109.47017 * 329.99211 * 6 5 4 37 37 H 0.97001 * 119.99796 * 0.02562 * 9 7 6 38 38 H 1.08994 * 109.47742 * 300.00123 * 10 9 7 39 39 H 1.09001 * 109.47023 * 60.00724 * 10 9 7 40 40 H 1.08997 * 109.47607 * 59.99891 * 13 11 10 41 41 H 1.09003 * 109.46875 * 180.02562 * 13 11 10 42 42 H 1.09001 * 109.47521 * 299.99760 * 13 11 10 43 43 H 1.00902 * 111.00052 * 31.04738 * 14 11 10 44 44 H 1.09001 * 109.47020 * 300.00229 * 15 14 11 45 45 H 1.09000 * 109.46932 * 60.00251 * 15 14 11 46 46 H 0.97001 * 119.99238 * 0.02562 * 18 16 15 47 47 H 0.96999 * 119.99858 * 179.97438 * 22 21 19 48 48 H 1.08002 * 119.99604 * 180.02562 * 27 5 4 49 49 H 1.09009 * 109.46829 * 90.00413 * 29 28 2 50 50 H 1.09000 * 109.47383 * 209.99923 * 29 28 2 51 51 H 1.08993 * 109.47206 * 330.00304 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 5.7787 0.0001 -0.0078 7 6 6.2879 0.0041 1.4104 8 8 5.5043 0.0062 2.3361 9 7 7.6143 0.0043 1.6503 10 6 8.1093 0.0087 3.0291 11 6 9.6393 0.0086 3.0216 12 1 10.0006 0.9385 2.5825 13 6 10.1562 -0.1127 4.4565 14 7 10.1250 -1.1286 2.2285 15 6 11.4697 -0.8652 1.6992 16 6 11.9338 -2.0511 0.8936 17 8 11.2147 -3.0204 0.7718 18 7 13.1474 -2.0346 0.3074 19 6 13.5697 -3.1137 -0.4250 20 1 12.9297 -3.9771 -0.5327 21 6 14.8206 -3.0964 -1.0297 22 7 15.5990 -2.0457 -0.8990 23 14 15.3957 -4.5665 -2.0283 24 1 14.4560 -4.7980 -3.1547 25 1 16.7549 -4.2999 -2.5639 26 1 15.4336 -5.7706 -1.1600 27 6 3.5806 -1.1969 0.0005 28 6 2.1981 -1.1969 -0.0005 29 6 1.4446 -2.5020 -0.0005 30 1 -0.3633 -0.0001 -1.0278 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5137 33 1 1.6583 2.1326 -0.0004 34 1 4.1205 2.1327 -0.0010 35 1 6.1396 -0.8914 -0.5209 36 1 6.1395 0.8886 -0.5260 37 1 8.2410 0.0022 0.9099 38 1 7.7489 0.9005 3.5417 39 1 7.7481 -0.8794 3.5476 40 1 9.7950 -1.0426 4.8955 41 1 11.2462 -0.1123 4.4512 42 1 9.7959 0.7310 5.0450 43 1 9.4809 -1.3519 1.4845 44 1 11.4428 0.0191 1.0624 45 1 12.1591 -0.6963 2.5265 46 1 13.7222 -1.2593 0.4046 47 1 16.4724 -2.0337 -1.3208 48 1 4.1207 -2.1322 0.0010 49 1 1.2626 -2.8165 -1.0283 50 1 2.0339 -3.2618 0.5129 51 1 0.4924 -2.3718 0.5136 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714300379.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:43 Heat of formation + Delta-G solvation = -85.199307 kcal Electronic energy + Delta-G solvation = -29263.241895 eV Core-core repulsion = 25160.700596 eV Total energy + Delta-G solvation = -4102.541299 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.21731 -40.33447 -39.99191 -38.19659 -35.97352 -35.13128 -34.94702 -33.27436 -33.14015 -32.15898 -30.68034 -28.25600 -28.10837 -27.35437 -25.95502 -25.39828 -23.02844 -21.91345 -21.66161 -21.13611 -20.73790 -19.91082 -18.42850 -17.71853 -17.34008 -17.07419 -16.82687 -16.71434 -16.42651 -16.32367 -15.89443 -15.61992 -15.50995 -15.29357 -15.07500 -14.67430 -14.29813 -14.05263 -13.89181 -13.71874 -13.65451 -13.58796 -13.49356 -13.45359 -13.27900 -12.92922 -12.80638 -12.79566 -12.67348 -12.56870 -12.52378 -12.41752 -12.12232 -11.90444 -11.83327 -11.72404 -11.49367 -11.00498 -10.33608 -10.16451 -10.00574 -9.63341 -9.36941 -9.31499 -8.45880 -5.94275 0.39153 0.50211 1.40104 1.42627 1.52925 1.60210 2.06099 2.14398 2.29477 2.82906 2.89956 3.21715 3.49134 3.65938 3.70670 3.85935 3.97926 4.03487 4.12625 4.17332 4.23808 4.26706 4.39096 4.40430 4.46464 4.51884 4.59607 4.60739 4.63452 4.70952 4.73659 4.82277 4.85719 4.88073 4.92391 5.03079 5.03503 5.04594 5.26342 5.30196 5.38940 5.41701 5.45405 5.53909 5.66379 5.76551 5.88605 6.09540 6.15726 6.36297 6.43309 6.61089 7.13659 7.18164 7.57517 8.12874 8.70985 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012644 B = 0.001837 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.024146 B =15235.551797 C =16680.156349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.102 4.102 3 C -0.126 4.126 4 C -0.121 4.121 5 C -0.081 4.081 6 C -0.100 4.100 7 C 0.517 3.483 8 O -0.574 6.574 9 N -0.725 5.725 10 C 0.124 3.876 11 C 0.079 3.921 12 H 0.070 0.930 13 C -0.138 4.138 14 N -0.681 5.681 15 C 0.065 3.935 16 C 0.437 3.563 17 O -0.624 6.624 18 N -0.572 5.572 19 C -0.334 4.334 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.918 5.918 23 Si 0.991 3.009 24 H -0.271 1.271 25 H -0.271 1.271 26 H -0.274 1.274 27 C -0.123 4.123 28 C -0.102 4.102 29 C -0.116 4.116 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.139 0.861 34 H 0.131 0.869 35 H 0.117 0.883 36 H 0.129 0.871 37 H 0.408 0.592 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.059 0.941 42 H 0.080 0.920 43 H 0.344 0.656 44 H 0.074 0.926 45 H 0.104 0.896 46 H 0.397 0.603 47 H 0.277 0.723 48 H 0.119 0.881 49 H 0.080 0.920 50 H 0.062 0.938 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.257 11.044 1.957 25.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.102 4.102 3 C -0.144 4.144 4 C -0.139 4.139 5 C -0.082 4.082 6 C -0.140 4.140 7 C 0.304 3.696 8 O -0.454 6.454 9 N -0.379 5.379 10 C 0.000 4.000 11 C -0.030 4.030 12 H 0.088 0.912 13 C -0.196 4.196 14 N -0.316 5.316 15 C -0.068 4.068 16 C 0.224 3.776 17 O -0.510 6.510 18 N -0.209 5.209 19 C -0.464 4.464 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.559 5.559 23 Si 0.815 3.185 24 H -0.196 1.196 25 H -0.195 1.195 26 H -0.200 1.200 27 C -0.141 4.141 28 C -0.102 4.102 29 C -0.172 4.172 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.157 0.843 34 H 0.149 0.851 35 H 0.135 0.865 36 H 0.147 0.853 37 H 0.244 0.756 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.164 0.836 44 H 0.092 0.908 45 H 0.122 0.878 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.137 0.863 49 H 0.098 0.902 50 H 0.081 0.919 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -23.858 10.105 3.020 26.085 hybrid contribution 1.179 0.119 -1.318 1.772 sum -22.679 10.223 1.702 24.935 Atomic orbital electron populations 1.20887 0.89504 1.03549 1.03096 1.20122 0.97459 0.92496 1.00079 1.21256 0.94111 0.98332 1.00729 1.21177 0.94835 0.97621 1.00307 1.19437 0.94268 0.93775 1.00705 1.20740 0.92663 1.07342 0.93229 1.20949 0.81841 0.74826 0.91958 1.90704 1.56530 1.50745 1.47370 1.46038 1.07102 1.75311 1.09418 1.21510 0.92942 1.02482 0.83066 1.21843 0.92426 0.92360 0.96383 0.91179 1.21753 1.01467 1.02468 0.93931 1.60110 1.02678 1.39660 1.29182 1.21613 0.92580 0.94183 0.98391 1.20893 0.82537 0.90383 0.83761 1.90503 1.56511 1.37933 1.66092 1.41916 1.15431 1.17935 1.45601 1.19613 1.01167 0.97340 1.28241 0.90374 1.25999 0.95550 1.00874 0.98727 1.69659 1.10967 1.30192 1.45106 0.85022 0.77568 0.77714 0.78245 1.19628 1.19549 1.19957 1.21071 0.94325 0.97736 1.01008 1.20039 0.93567 0.96237 1.00323 1.20888 1.00281 0.92984 1.03036 0.90172 0.90556 0.90863 0.84307 0.85087 0.86520 0.85293 0.75556 0.89933 0.92415 0.92912 0.92197 0.90101 0.83571 0.90816 0.87814 0.76928 0.91325 0.86339 0.90168 0.91914 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 9.60 71.24 0.68 -0.71 16 2 C -0.10 -1.89 5.88 -19.86 -0.12 -2.01 16 3 C -0.13 -2.37 9.70 22.27 0.22 -2.15 16 4 C -0.12 -2.46 9.70 22.27 0.22 -2.25 16 5 C -0.08 -1.78 4.37 -19.86 -0.09 -1.87 16 6 C -0.10 -1.82 5.83 29.10 0.17 -1.65 16 7 C 0.52 12.32 7.82 87.65 0.69 13.01 16 8 O -0.57 -18.54 16.03 -3.04 -0.05 -18.58 16 9 N -0.73 -14.92 4.99 -463.06 -2.31 -17.23 16 10 C 0.12 2.67 5.31 86.38 0.46 3.13 16 11 C 0.08 1.65 2.81 44.91 0.13 1.77 16 12 H 0.07 1.22 7.80 -2.39 -0.02 1.20 16 13 C -0.14 -2.71 9.41 71.98 0.68 -2.03 16 14 N -0.68 -19.65 5.93 -495.59 -2.94 -22.59 16 15 C 0.06 2.02 5.96 85.56 0.51 2.53 16 16 C 0.44 19.87 7.82 87.65 0.69 20.55 16 17 O -0.62 -33.57 15.78 -3.07 -0.05 -33.62 16 18 N -0.57 -28.32 5.29 -306.97 -1.62 -29.94 16 19 C -0.33 -18.57 9.68 84.04 0.81 -17.76 16 20 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 21 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 22 N -0.92 -48.48 13.05 21.66 0.28 -48.20 16 23 Si 0.99 42.25 29.55 68.60 2.03 44.28 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 25 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 C -0.12 -2.81 9.36 22.27 0.21 -2.60 16 28 C -0.10 -2.08 5.88 -19.87 -0.12 -2.20 16 29 C -0.12 -1.75 9.60 71.24 0.68 -1.07 16 30 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.08 0.82 5.95 -2.39 -0.01 0.80 16 32 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16 33 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 35 H 0.12 1.84 8.08 -2.39 -0.02 1.83 16 36 H 0.13 1.60 8.09 -2.39 -0.02 1.59 16 37 H 0.41 7.05 7.37 -92.71 -0.68 6.37 16 38 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.06 1.21 7.45 -2.39 -0.02 1.19 16 42 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.34 10.29 6.41 -89.69 -0.58 9.72 16 44 H 0.07 1.90 8.06 -2.39 -0.02 1.88 16 45 H 0.10 2.97 7.44 -2.39 -0.02 2.95 16 46 H 0.40 18.57 7.90 -92.71 -0.73 17.84 16 47 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 48 H 0.12 2.58 8.06 -2.91 -0.02 2.55 16 49 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 50 H 0.06 0.98 8.09 -2.39 -0.02 0.96 16 51 H 0.08 1.00 5.95 -2.39 -0.01 0.99 16 Total: -1.00 -74.23 421.35 0.60 -73.63 By element: Atomic # 1 Polarization: 48.70 SS G_CDS: -1.03 Total: 47.68 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 6.28 Total: 4.57 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -6.59 Total: -117.96 kcal Atomic # 8 Polarization: -52.11 SS G_CDS: -0.10 Total: -52.20 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -74.23 0.60 -73.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714300379.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.564 kcal (2) G-P(sol) polarization free energy of solvation -74.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds