Wall clock time and date at job start Wed Apr 1 2020 05:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 119.99974 * 2 1 4 4 H 1.48509 * 109.47036 * 270.00353 * 3 2 1 5 5 H 1.48499 * 109.47387 * 30.00362 * 3 2 1 6 6 H 1.48495 * 109.47390 * 150.00679 * 3 2 1 7 7 C 1.38817 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99743 * 359.97438 * 7 2 1 9 9 N 1.36938 * 119.99772 * 179.97438 * 7 2 1 10 10 C 1.46507 * 119.99671 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46980 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47194 * 295.00357 * 11 10 9 13 13 N 1.46499 * 109.46824 * 55.00128 * 11 10 9 14 14 C 1.34784 * 119.99893 * 204.99873 * 13 11 10 15 15 O 1.21610 * 119.99781 * 359.97438 * 14 13 11 16 16 C 1.47420 * 119.99760 * 179.72621 * 14 13 11 17 17 N 1.36061 * 126.45217 * 359.68946 * 16 14 13 18 18 C 1.29934 * 108.47750 * 179.88509 * 17 16 14 19 19 O 1.34047 * 109.24231 * 0.37835 * 18 17 16 20 20 C 1.34259 * 108.22862 * 359.76314 * 19 18 17 21 21 C 1.50692 * 126.52552 * 179.97438 * 20 19 18 22 22 C 1.53000 * 117.50108 * 8.74402 * 21 20 19 23 23 C 1.53010 * 117.49829 * 300.08457 * 21 20 19 24 24 C 1.52995 * 109.46864 * 174.99955 * 11 10 9 25 25 C 1.52997 * 109.47473 * 300.00053 * 24 11 10 26 26 C 1.52998 * 109.47165 * 179.97438 * 25 24 11 27 27 C 1.53002 * 109.46752 * 60.00505 * 26 25 24 28 28 C 1.52998 * 109.47068 * 299.99154 * 27 26 25 29 29 C 1.53004 * 109.46864 * 180.02562 * 24 11 10 30 30 H 0.97004 * 120.00235 * 359.97438 * 1 2 3 31 31 H 0.96995 * 120.00563 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.46615 * 60.00328 * 10 9 7 33 33 H 1.08992 * 109.47157 * 300.00033 * 10 9 7 34 34 H 0.97005 * 120.00261 * 25.00085 * 13 11 10 35 35 H 1.07998 * 125.37530 * 180.17889 * 18 17 16 36 36 H 1.08995 * 115.55227 * 154.42000 * 21 20 19 37 37 H 1.08998 * 117.49755 * 0.02562 * 22 21 20 38 38 H 1.09000 * 117.50277 * 145.02377 * 22 21 20 39 39 H 1.08996 * 117.49679 * 214.98047 * 23 21 20 40 40 H 1.09000 * 117.49641 * 359.97438 * 23 21 20 41 41 H 1.09007 * 109.47281 * 60.00379 * 24 11 10 42 42 H 1.08998 * 109.46926 * 300.00256 * 25 24 11 43 43 H 1.09003 * 109.47129 * 59.99899 * 25 24 11 44 44 H 1.08998 * 109.47555 * 300.00051 * 26 25 24 45 45 H 1.08997 * 109.47278 * 179.97438 * 26 25 24 46 46 H 1.09009 * 109.46944 * 179.97438 * 27 26 25 47 47 H 1.08998 * 109.47683 * 59.99994 * 27 26 25 48 48 H 1.08998 * 109.47554 * 300.00919 * 28 27 26 49 49 H 1.08997 * 109.47358 * 179.97438 * 28 27 26 50 50 H 1.08997 * 109.47519 * 300.00087 * 29 24 11 51 51 H 1.08998 * 109.47319 * 60.00518 * 29 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4002 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4709 -0.0011 11 6 5.6164 -2.1913 -0.0024 12 1 5.8936 -1.6982 -0.9342 13 7 5.9526 -1.3227 1.1284 14 6 7.0505 -0.5426 1.0760 15 8 7.7623 -0.5602 0.0901 16 6 7.3854 0.3359 2.2114 17 7 6.6800 0.4672 3.3675 18 6 7.2878 1.3304 4.1250 19 8 8.3796 1.7822 3.4919 20 6 8.4553 1.1726 2.2981 21 6 9.5214 1.3766 1.2528 22 6 10.7419 2.2130 1.6424 23 6 9.6940 2.7871 0.6856 24 6 6.3805 -3.5108 0.1234 25 6 5.9915 -4.2028 1.4313 26 6 6.7551 -5.5227 1.5566 27 6 8.2595 -5.2436 1.5552 28 6 8.6485 -4.5516 0.2472 29 6 7.8847 -3.2311 0.1227 30 1 -0.4851 0.8401 0.0004 31 1 3.8646 -0.3621 -0.0014 32 1 3.8485 -3.0425 -0.8908 33 1 3.8492 -3.0422 0.8891 34 1 5.3850 -1.3089 1.9150 35 1 6.9628 1.6378 5.1079 36 1 9.6814 0.5384 0.5747 37 1 10.7738 2.6154 2.6549 38 1 11.7048 1.9253 1.2203 39 1 9.9679 2.8767 -0.3656 40 1 9.0360 3.5674 1.0681 41 1 6.1304 -4.1571 -0.7180 42 1 6.2416 -3.5565 2.2726 43 1 4.9198 -4.4020 1.4322 44 1 6.5046 -6.1688 0.7153 45 1 6.4784 -6.0155 2.4886 46 1 8.8035 -6.1839 1.6450 47 1 8.5100 -4.5975 2.3966 48 1 8.3979 -5.1977 -0.5941 49 1 9.7201 -4.3524 0.2463 50 1 8.1623 -2.7379 -0.8088 51 1 8.1346 -2.5851 0.9643 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714977109.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:22 Heat of formation + Delta-G solvation = 9.729510 kcal Electronic energy + Delta-G solvation = -32245.722235 eV Core-core repulsion = 28147.297359 eV Total energy + Delta-G solvation = -4098.424877 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.57253 -40.15403 -38.07834 -37.42545 -35.81406 -34.90772 -33.63439 -31.54678 -30.89366 -30.61685 -30.29158 -27.48681 -24.81111 -23.86853 -23.57964 -22.69839 -22.65567 -21.52677 -21.32952 -20.50266 -20.18810 -19.29193 -18.31626 -17.51045 -16.96787 -16.58040 -16.04952 -15.72328 -15.44328 -15.17839 -14.68123 -14.44185 -14.18947 -14.04454 -13.87892 -13.74604 -13.63082 -13.28372 -12.76873 -12.63691 -12.44820 -12.31333 -11.98234 -11.89976 -11.89342 -11.47809 -11.28908 -11.17216 -11.09449 -11.05358 -11.00219 -10.83660 -10.80017 -10.67165 -10.38553 -10.18406 -10.15569 -9.83323 -9.70664 -9.58990 -8.95089 -8.89246 -8.62613 -7.23151 -5.76609 -3.11966 0.95674 2.00417 2.35416 3.29798 3.34604 3.39309 3.44534 3.46481 3.60530 3.95591 4.16424 4.52388 4.60557 4.62150 4.70936 4.80035 4.83260 4.88611 4.93399 5.17827 5.28422 5.29641 5.36753 5.38579 5.44910 5.48693 5.54012 5.60315 5.60686 5.63887 5.73050 5.75872 5.77082 5.78197 5.87903 5.89493 5.98241 6.05477 6.10755 6.18126 6.27021 6.29839 6.38876 6.43310 6.49335 6.60645 6.66638 6.85758 7.31654 7.80486 7.99004 8.37550 8.42417 9.21335 9.93936 10.13273 11.41675 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006869 B = 0.005089 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4075.246556 B = 5501.015741 C = 8366.216472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.008 3.992 3 Si 0.881 3.119 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.091 0.909 9 N -0.754 5.754 10 C 0.147 3.853 11 C 0.138 3.862 12 H 0.089 0.911 13 N -0.692 5.692 14 C 0.601 3.399 15 O -0.537 6.537 16 C -0.064 4.064 17 N -0.455 5.455 18 C 0.172 3.828 19 O -0.201 6.201 20 C 0.066 3.934 21 C -0.081 4.081 22 C -0.170 4.170 23 C -0.158 4.158 24 C -0.092 4.092 25 C -0.117 4.117 26 C -0.117 4.117 27 C -0.118 4.118 28 C -0.119 4.119 29 C -0.105 4.105 30 H 0.259 0.741 31 H 0.363 0.637 32 H 0.042 0.958 33 H 0.038 0.962 34 H 0.412 0.588 35 H 0.255 0.745 36 H 0.157 0.843 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.056 0.944 48 H 0.058 0.942 49 H 0.055 0.945 50 H 0.068 0.932 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.458 -2.170 6.684 24.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.188 4.188 3 Si 0.711 3.289 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.109 0.891 9 N -0.400 5.400 10 C 0.020 3.980 11 C 0.033 3.967 12 H 0.107 0.893 13 N -0.342 5.342 14 C 0.387 3.613 15 O -0.415 6.415 16 C -0.184 4.184 17 N -0.184 5.184 18 C -0.056 4.056 19 O -0.088 6.088 20 C 0.010 3.990 21 C -0.099 4.099 22 C -0.207 4.207 23 C -0.195 4.195 24 C -0.112 4.112 25 C -0.155 4.155 26 C -0.154 4.154 27 C -0.156 4.156 28 C -0.157 4.157 29 C -0.142 4.142 30 H 0.069 0.931 31 H 0.196 0.804 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.248 0.752 35 H 0.271 0.729 36 H 0.174 0.826 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.115 0.885 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.073 0.927 50 H 0.087 0.913 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 23.132 -2.594 6.133 24.072 hybrid contribution 0.556 1.698 0.545 1.868 sum 23.688 -0.896 6.679 24.628 Atomic orbital electron populations 1.69695 1.05054 1.25781 1.57569 1.24623 0.95151 0.97039 1.01952 0.86600 0.79303 0.85196 0.77798 1.21156 1.21765 1.20327 1.19038 0.80515 0.94722 1.43056 0.89099 1.42700 1.04072 1.02116 1.91148 1.21021 0.87207 0.89918 0.99872 1.21444 0.95672 0.89883 0.89654 0.89258 1.45806 1.25778 1.41532 1.21061 1.16604 0.81448 0.78846 0.84413 1.90751 1.50941 1.67930 1.31867 1.21542 0.95896 1.04650 0.96311 1.70805 1.28333 1.16943 1.02319 1.28015 0.83044 0.94467 1.00117 1.84309 1.42966 1.55556 1.25975 1.22586 0.97632 0.93707 0.85079 1.20756 0.93856 0.98387 0.96874 1.23096 0.93723 1.02941 1.00974 1.23090 1.01913 0.94361 1.00120 1.21514 0.95358 0.95805 0.98540 1.21650 1.00283 0.96028 0.97534 1.21513 0.94938 0.97598 1.01383 1.21527 0.96286 0.99763 0.97984 1.21573 0.99360 0.97295 0.97448 1.21629 0.93825 0.96079 1.02691 0.93079 0.80443 0.93993 0.94428 0.75177 0.72921 0.82607 0.88211 0.87568 0.87257 0.88451 0.90233 0.92059 0.91068 0.92107 0.92404 0.92702 0.92501 0.92291 0.92668 0.91302 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.53 13.97 55.49 0.78 -28.76 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 3 Si 0.88 22.91 27.73 -169.99 -4.71 18.20 16 4 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 5 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 6 H -0.28 -6.99 6.52 56.52 0.37 -6.62 16 7 C -0.24 -6.90 10.47 -15.06 -0.16 -7.06 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.75 -17.95 5.24 -59.91 -0.31 -18.26 16 10 C 0.15 2.76 5.60 -4.04 -0.02 2.74 16 11 C 0.14 2.21 2.16 -67.93 -0.15 2.06 16 12 H 0.09 1.56 7.58 -51.93 -0.39 1.17 16 13 N -0.69 -11.30 3.64 -54.88 -0.20 -11.50 16 14 C 0.60 9.90 6.17 -12.52 -0.08 9.83 16 15 O -0.54 -9.12 12.00 5.27 0.06 -9.06 16 16 C -0.06 -0.98 6.99 -83.02 -0.58 -1.56 16 17 N -0.46 -6.63 11.06 -11.49 -0.13 -6.76 16 18 C 0.17 1.84 13.19 51.96 0.69 2.53 16 19 O -0.20 -2.32 10.50 6.51 0.07 -2.25 16 20 C 0.07 0.88 6.90 -35.08 -0.24 0.64 16 21 C -0.08 -0.90 5.60 -91.77 -0.51 -1.42 16 22 C -0.17 -1.41 10.18 -26.69 -0.27 -1.68 16 23 C -0.16 -1.49 10.24 -26.69 -0.27 -1.76 16 24 C -0.09 -1.22 2.07 -90.62 -0.19 -1.40 16 25 C -0.12 -1.46 4.70 -26.73 -0.13 -1.59 16 26 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 27 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 28 C -0.12 -1.30 5.93 -26.70 -0.16 -1.46 16 29 C -0.10 -1.36 3.73 -26.70 -0.10 -1.46 16 30 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 31 H 0.36 8.77 5.20 -40.82 -0.21 8.55 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.04 0.70 6.17 -51.93 -0.32 0.38 16 34 H 0.41 7.00 8.33 -40.82 -0.34 6.66 16 35 H 0.26 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.16 1.87 6.66 -51.93 -0.35 1.52 16 37 H 0.10 0.80 8.01 -51.93 -0.42 0.38 16 38 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 0.81 7.60 -51.93 -0.39 0.42 16 43 H 0.07 0.93 6.32 -51.93 -0.33 0.60 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.07 0.97 7.52 -51.93 -0.39 0.58 16 51 H 0.06 0.86 5.78 -51.93 -0.30 0.56 16 LS Contribution 399.31 15.07 6.02 6.02 Total: -1.00 -33.62 399.31 -9.12 -42.74 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -8.11 Total: 13.89 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -2.58 Total: -4.25 kcal Atomic # 7 Polarization: -65.42 SS G_CDS: 0.13 Total: -65.28 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.13 Total: -11.31 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.71 Total: 18.20 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.62 -9.12 -42.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714977109.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.470 kcal (2) G-P(sol) polarization free energy of solvation -33.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds